Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0010250 | OGI:02023270 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:8079943-8082520 | ||||||||
| Gene Symbol | DLN52, OsDLN52 | ||||||||||
| DNA seq | atgaaggagaaggaagtgctagttgagattgttgaggatgatgagctgaagagatcgattggtagaaatcagctggacctcaacgaggaagttatggatgtcgagagcgaggagggagaagtcggcgatgatgaagatgacgaagatgaggaggatgacgacgacgacgatgatggtggtagcaccaccgatgttgccggaagcaggagctccagcaacaacagcagcaccaataacgtttcagagagcaaattgaagggcgacaaggatagcggtggcggcaggttggaggggatcaacggcggagagcagagggtgccatcggtgcggcagtacaaccggtcgaagctgcctcggctccggtggacaccggacctccacatggcctttgtccatgccgttgagaggctcggtggccaagagagtaagtagcctaaaaacttcatcttctttttcttttgaaacgagcaacaccagatagtgcgatgtttcatattaacatagcagaaactgctagaacttttatcacatggtatatatgtatgtgtgtagctgcctgcatctcttgcaattatggattatttgcttttcttctgagtcctaaactccaatttcttgttgtgcttttattgttttctcaccgatgatttgcatgtgttgatgtaggagcaactcctaagttggtgcttcagatgatgaatgttagggggctcagcattgctcatgtaaaaagccacttgcaggtaaatgatgctctaaagtgctctagaatttctacaagttaaagagctagattcttaattcgtagtcgatatctacctcgtatattcgcaattccattaattctcatggattaattagcatgcatggattccaagtttccaactaatttttgatccattaattttgtttcagatgtatagaagcaagaagttggatcacgagggtcgccagatcagaggagccatcgcctcaggtttaataactttcaatcatcatgcatgcacacaccaattctctccacatctctgcacatcaatttatttcattagtctcatctttttctcaagaggttgtacattttttttcatgattaattttttgcttctcatgtggttttgcagtgttctctccaatggatttccatctgatgagaggcgatcgacgcttccacgacatgctcctccagcgagccgccgcgctctcctcctccaggcaggagcacggcggtttcttctcctcgagaagcggcggcggcggcggcggcctaccgccggaggccagccggctgtacggactcctccaacaccggcagtctccggcgatagcgacgatgcaaacattagacttcaagaacagcagtttcaggtaatcaaagtgccttagctaagttcgtatcttctctgccgagacgtacgaaaccctaatttctgcgagtgtgtgtggtctctgaatctgaaggaaccaagagtggtcgttcagcttcaaccaccagcggaaggagacgatgaatccgtcgtcgtcgtcgtcgaccaccgcggcgatcaggcggtggccttcagccgccggcgcggtcgccgtcgtcgccggcgagcgacaaagactagcggagagattcggctactacaccgggaacggtggcgcgtcgtcgacgtctctgccgctcatcacgagggccgccatggcggcgccgccgccgatgtttgcggcggccgtggcgccgccgggacgtgatcaccatcgtcttccgtttggatggcacgccggcggcggcggcggcggcggcggtaataagaacaggtcgtcgtcggatcccgtggtgatcgatgaagccctagattcccgccgcctcgaggttcgtgcatgccccccattcgtatttatccatgcatatcatcttatcattctccacgtcgacgaacgctgtactccgtttattccaaaatatagcagtctaaaaataaattagacatttcataaatttcatatactcaatactcaatgttcaatttattattattttggaacagagaatgacaagcatcgagtcatttctgaatctctatctgacacgcgcgcccatttgacaacgtaaactaactaactttttttttatcacgacattgcatgtgtggttcagcatcagcagaagcatgtagaacaaccaaggatgactccgacgacgacgaccacaccggccggcaagcggccaccggagtggtcaccaccggacctgcagctcaccttgtctccgacgaccgcccccgcggccgcagacggcggcggggccaagaggagcaagacgtcaacgacgacgacgaacaccaccgccgccatttcaggcgagcaagaagcagagaagaatatggatcgctgcaagaacaagctgtccatctcgctctcgctctcgccgccggcagcagcagcagcagcggcgaacttctcctccatggatttgtccatggagcagcagaagcagaagcaggaaaagacaacaataggaagcagtgaggaggaggccggtgatctggggcagagtactttggatctgaccatgtcgatcagggcattggagtga
More
|
||||||||||
| CDS seq | atgaaggagaaggaagtgctagttgagattgttgaggatgatgagctgaagagatcgattggtagaaatcagctggacctcaacgaggaagttatggatgtcgagagcgaggagggagaagtcggcgatgatgaagatgacgaagatgaggaggatgacgacgacgacgatgatggtggtagcaccaccgatgttgccggaagcaggagctccagcaacaacagcagcaccaataacgtttcagagagcaaattgaagggcgacaaggatagcggtggcggcaggttggaggggatcaacggcggagagcagagggtgccatcggtgcggcagtacaaccggtcgaagctgcctcggctccggtggacaccggacctccacatggcctttgtccatgccgttgagaggctcggtggccaagagagagcaactcctaagttggtgcttcagatgatgaatgttagggggctcagcattgctcatgtaaaaagccacttgcagatgtatagaagcaagaagttggatcacgagggtcgccagatcagaggagccatcgcctcagtgttctctccaatggatttccatctgatgagaggcgatcgacgcttccacgacatgctcctccagcgagccgccgcgctctcctcctccaggcaggagcacggcggtttcttctcctcgagaagcggcggcggcggcggcggcctaccgccggaggccagccggctgtacggactcctccaacaccggcagtctccggcgatagcgacgatgcaaacattagacttcaagaacagcagtttcaggaaccaagagtggtcgttcagcttcaaccaccagcggaaggagacgatgaatccgtcgtcgtcgtcgtcgaccaccgcggcgatcaggcggtggccttcagccgccggcgcggtcgccgtcgtcgccggcgagcgacaaagactagcggagagattcggctactacaccgggaacggtggcgcgtcgtcgacgtctctgccgctcatcacgagggccgccatggcggcgccgccgccgatgtttgcggcggccgtggcgccgccgggacgtgatcaccatcgtcttccgtttggatggcacgccggcggcggcggcggcggcggcggtaataagaacaggtcgtcgtcggatcccgtggtgatcgatgaagccctagattcccgccgcctcgagcatcagcagaagcatgtagaacaaccaaggatgactccgacgacgacgaccacaccggccggcaagcggccaccggagtggtcaccaccggacctgcagctcaccttgtctccgacgaccgcccccgcggccgcagacggcggcggggccaagaggagcaagacgtcaacgacgacgacgaacaccaccgccgccatttcaggcgagcaagaagcagagaagaatatggatcgctgcaagaacaagctgtccatctcgctctcgctctcgccgccggcagcagcagcagcagcggcgaacttctcctccatggatttgtccatggagcagcagaagcagaagcaggaaaagacaacaataggaagcagtgaggaggaggccggtgatctggggcagagtactttggatctgaccatgtcgatcagggcattggagtga
More
|
||||||||||
| Protein seq | MKEKEVLVEIVEDDELKRSIGRNQLDLNEEVMDVESEEGEVGDDEDDEDEEDDDDDDDGGSTTDVAGSRSSSNNSSTNNVSESKLKGDKDSGGGRLEGINGGEQRVPSVRQYNRSKLPRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRSKKLDHEGRQIRGAIASVFSPMDFHLMRGDRRFHDMLLQRAAALSSSRQEHGGFFSSRSGGGGGGLPPEASRLYGLLQHRQSPAIATMQTLDFKNSSFRNQEWSFSFNHQRKETMNPSSSSSTTAAIRRWPSAAGAVAVVAGERQRLAERFGYYTGNGGASSTSLPLITRAAMAAPPPMFAAAVAPPGRDHHRLPFGWHAGGGGGGGGNKNRSSSDPVVIDEALDSRRLEHQQKHVEQPRMTPTTTTTPAGKRPPEWSPPDLQLTLSPTTAPAAADGGGAKRSKTSTTTTNTTAAISGEQEAEKNMDRCKNKLSISLSLSPPAAAAAAANFSSMDLSMEQQKQKQEKTTIGSSEEEAGDLGQSTLDLTMSIRALE |
||||||||||
| Function | Putative Myb family transcription factor At1g14600 [UniProtKB/Swiss-Prot:Q700D9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0010250 | OsCMeo_02g0010250.01 | Chr02 | 8079943 | 8082520 | + | NAM | ||
| CDS seq | atgaaggagaaggaagtgctagttgagattgttgaggatgatgagctgaagagatcgattggtagaaatcagctggacctcaacgaggaagttatggatgtcgagagcgaggagggagaagtcggcgatgatgaagatgacgaagatgaggaggatgacgacgacgacgatgatggtggtagcaccaccgatgttgccggaagcaggagctccagcaacaacagcagcaccaataacgtttcagagagcaaattgaagggcgacaaggatagcggtggcggcaggttggaggggatcaacggcggagagcagagggtgccatcggtgcggcagtacaaccggtcgaagctgcctcggctccggtggacaccggacctccacatggcctttgtccatgccgttgagaggctcggtggccaagagagagcaactcctaagttggtgcttcagatgatgaatgttagggggctcagcattgctcatgtaaaaagccacttgcagatgtatagaagcaagaagttggatcacgagggtcgccagatcagaggagccatcgcctcagtgttctctccaatggatttccatctgatgagaggcgatcgacgcttccacgacatgctcctccagcgagccgccgcgctctcctcctccaggcaggagcacggcggtttcttctcctcgagaagcggcggcggcggcggcggcctaccgccggaggccagccggctgtacggactcctccaacaccggcagtctccggcgatagcgacgatgcaaacattagacttcaagaacagcagtttcaggaaccaagagtggtcgttcagcttcaaccaccagcggaaggagacgatgaatccgtcgtcgtcgtcgtcgaccaccgcggcgatcaggcggtggccttcagccgccggcgcggtcgccgtcgtcgccggcgagcgacaaagactagcggagagattcggctactacaccgggaacggtggcgcgtcgtcgacgtctctgccgctcatcacgagggccgccatggcggcgccgccgccgatgtttgcggcggccgtggcgccgccgggacgtgatcaccatcgtcttccgtttggatggcacgccggcggcggcggcggcggcggcggtaataagaacaggtcgtcgtcggatcccgtggtgatcgatgaagccctagattcccgccgcctcgagcatcagcagaagcatgtagaacaaccaaggatgactccgacgacgacgaccacaccggccggcaagcggccaccggagtggtcaccaccggacctgcagctcaccttgtctccgacgaccgcccccgcggccgcagacggcggcggggccaagaggagcaagacgtcaacgacgacgacgaacaccaccgccgccatttcaggcgagcaagaagcagagaagaatatggatcgctgcaagaacaagctgtccatctcgctctcgctctcgccgccggcagcagcagcagcagcggcgaacttctcctccatggatttgtccatggagcagcagaagcagaagcaggaaaagacaacaataggaagcagtgaggaggaggccggtgatctggggcagagtactttggatctgaccatgtcgatcagggcattggagtga
More
|
|||||||
| Protein seq | MKEKEVLVEIVEDDELKRSIGRNQLDLNEEVMDVESEEGEVGDDEDDEDEEDDDDDDDGGSTTDVAGSRSSSNNSSTNNVSESKLKGDKDSGGGRLEGINGGEQRVPSVRQYNRSKLPRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRSKKLDHEGRQIRGAIASVFSPMDFHLMRGDRRFHDMLLQRAAALSSSRQEHGGFFSSRSGGGGGGLPPEASRLYGLLQHRQSPAIATMQTLDFKNSSFRNQEWSFSFNHQRKETMNPSSSSSTTAAIRRWPSAAGAVAVVAGERQRLAERFGYYTGNGGASSTSLPLITRAAMAAPPPMFAAAVAPPGRDHHRLPFGWHAGGGGGGGGNKNRSSSDPVVIDEALDSRRLEHQQKHVEQPRMTPTTTTTPAGKRPPEWSPPDLQLTLSPTTAPAAADGGGAKRSKTSTTTTNTTAAISGEQEAEKNMDRCKNKLSISLSLSPPAAAAAAANFSSMDLSMEQQKQKQEKTTIGSSEEEAGDLGQSTLDLTMSIRALE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 5.606890 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0241200 | RBH | 0.123805 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g14490 | RBH | 0.073691 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0241200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010300 | RBH | 0.0 | 8.516270 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0010370 | RBH | 0.078428 | 0.654363 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0018720 | RBH | 1.033255 | 6.678567 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010050 | RBH | 0.0 | 0.192749 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010180 | RBH | 0.000000 | 7.166226 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0132500 | RBH | 1.0116545 | 1.5641875 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0009940 | RBH | 0.000000 | 0.497798 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0140200 | RBH | 1.304756 | 0.881787 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010480 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010120 | RBH | 0.111356 | 5.533041 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010410 | RBH | 0.0 | 5.750690 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010430 | RBH | 0.0 | 0.728716 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0010110 | RBH | 0.000000 | 5.730957 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010330 | RBH | 0.0 | 2.870404 | 0.383441 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0010130 | RBH | 0.000000 | 9.038074 | 0.0 |
