Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0047670 | OGI:01123870 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:43405872-43411855 | ||||||||
| Gene Symbol | MLH1, OsMLH1, PSSR1 | ||||||||||
| DNA seq | ctcgagcgagtgagtcccgaccacgtcgctgccctcgcctcaccgccggccaaccgccgtgacgagagatcgagcagggcggggcatggacgagccttcgccgcgcggaggtgggtgcgccggggagccgccccgcatccggaggttggaggagtcggtggtgaaccgcatcgcggcgggggaggtgatccagcggccgtcgtcggcggtgaaggagctcatcgagaacagcctcgacgctggcgcctccagcgtctccgttgcggtgaaggacggtggcctcaagctcatccaggtctccgatgacggccatggcatcagggtacacttccaaaccaatccccccaatctcttaaaccctcaccgcccaactctccatctcctaaaccctaatcaatgtcgctaatggtaggaatggttttagctaattttgtttatttgacagtttgaggatttggcaatattgtgcgaaaggcatactacctcaaagttatctgcatacgaggatctgcagaccataaaatcgatggggttcagaggggaggctttggctagtatgacttatgttggccatgttaccgtgacaacgataacagaaggccaattgcacggctacaggtcagtcattgaacagattcggacttttgtgcgcgaagctaaagttgtttttaattgagtgatatcatattttgtaccagggtttcttacagagatggtgtaatggagaatgagcctaagccttgcgctgcggtgaaaggaactcaagtcatggtcagtcgactgagtttgcatgaagtaaatttttgctgtattagttggaaatgtattgttctgtgtaaccaacagaaggttctctgcaggttgaaaatctattttacaacatggtagcccgcaagaaaacattgcagaactccaatgatgactaccccaagatcgtagacttcatcagtcggtttgcagtccatcacatcaacgttaccttctcttgcagaaaggtgaatatggtgtcttgtgttatctcatcgacttgaagaggttgacattttcctcccattatgtcacagcatggagccaatagagcagatgttcatagtgcaagtacatcctcaaggttagatgctatcaggagtgtctatggggcttctgtcgttcgtgatctcatagaaataaaggtttcatatgaggatgctgcagattcaatcttcaagatggatggttacatctcaaatgcaaattatgtggcaaagaagattacaatgattcttttcataaatggtacaaaagatagtttccattcactggaatatgtgaaactctagatgctaatggtttaatatgaacataagaacttatgtgcactacttcccatgtagataatgcttgtggttaggtttggcaagttggttggcttctgttcatttaactgagttattattgtcaaaagtggttaatttctagggaataaatctatatacccattgatatgaaactgcataaatcccccaaaatctatggttaaccatagtttacagctcttctttacggtcacatatgtttctgtggtttagcaattaattgtcttcatatttatgtttcagataggcttgtagactgtactgctttgaaaagagctattgaatttgtgtactctgcaacattgcctcaagcatccaaacctttcatatacatgtccatacatcttccatcagaacacgtggatgttaatatacacccaaccaagaaagaggtatattgtgacccacatccttggaagaatttttcgagaggacacttctaattattctttcagattttgagcactgcaattttccactaagagaacactaaattgcctttttggttatcccttttgtcttgcaggttagccttttgaatcaagagcgtattattgaaacaataagaaatgctattgaggaaaaactgatgaattctaatacaaccaggatattccaaactcaggtacttcaggtttattttacactatatatctgcatttgtattgcatacatcatttatttcccttcaatgcatctgtactacccaaatcagtatgatgaggctattgtgggtgataaactgttaagttttcttgtgggttactttcgttctgtatgtttgtttagttttcattgtgtgactggtcattattttcggggacaatgtatctgttgcaatcttccaagctgcatgactgcgttaacttataaacattcctaaatacttgcaagtactatgctggaatagtgaaattcatgctaattttcatcaaaattttcgcgtaagaaaaggatctgtcactagatggtcctctatgaaaaagaaaagcttagattgaataaagcttcccttgtgttcgtgaaatggtgtctggtgtgccagtggtgtttgtatgcatgcatactggattttataatctttaatatatgtaactccagtacaatatactctgaaataaaaacattacttgcttattatcaacttgtggcattaagttccaattattgaattgcagataaactttatcttcatcatcaaaaatatttacaaatgcatttttcatgatgatgcgaactttgtccccatcaatgctgctccatgtacattgcaggcattaaacttatcagggattgctcaagctaacccacaaaaggataaggtttctgaggccagtatgggttctggtatgtaagatctattcaacatttattatattgggtaaaatacttttagatcaattcctttttgagctacagtgttgtaatttgtaaaaaatatggcatgtgctactagcacattagtttacggtggatattcaactatcaagttattagtagtctgcctccttacccagccatctcttactgcaggaacaaaatctcaaaaaattcctgtgagccaaatggtcagaacagatccacgcaatccatctggaagattgcacacctactggcacgggcaatcttcaaatcttgaaaagaaatttgatcttgtatctgtaaggtatgggctttgttagcaagctattaactgttcaccgttttcatattctctgttctgttcagttatatttgtgttccctgaacctgaaattatttacgtgcactatgcatcctcatgtgaggaatttggtgtttacattactctggtttagttggaagtgctggaaatttatttatttattacattggttgctaaaattcagacaatccatttaaagatgtcagaaggattatcttaattcattgattttcactgggtttgtcctgttctacttgtacaatgttctccaagaaatgttgtaagatcaaggagaaaccaaaaagatgctggtgatttgtcaagccgtcatgagctccttgtggaaatagattctagcttccatcctggtaagctcatcttactccccggtgcctgttgcagtgcctgcctccattgttctagactaattatttattttttcttcaggccttttggacattgtcaagaactgcacatatgttggacttgccgatgaagcctttgctttgatacaacacaatacccgcttataccttgtaaatgtggtaaatattaggtaaatttaacagtgcattgattttcaccatttccattttgactagtgttctatgccttttctgtcatataaatttagaatatctgacatgaccagaatcacagttttattcagcgcaccataatcaaactgctgtctaatgcatatcatatacaactgccctctcgcaactaccgacctctattgcatcaattttgtccctgtggtaaaccactctggtatttttttcttatgtatattcactgttatgcagtaaagaacttatgtaccagcaagctttgtgccgttttgggaacttcaatgctattcagctcagtgaaccagctccacttcaggagttgctggtgatggcactgaaagacgatgaattgatgagtgatgaaaaggatgatgagaaactggagattgcagaagtaagctattttctcaactgcttgaggttttgttagtcttgtgacgaattttgttttgtccatctgcacgctgtttttactttggacttttggtgcagtcaacataatttaatgatgtattatttatttgtttgcaggtaaacactgagatactaaaagaaaatgctgagatgattaatgagtacttttctattcacattgatcaagatggcaaattgacaagacttcctgttgtactggaccagtacacccctgatatggaccgtcttccagaatttgtgttggctttaggaaatgatgtaggtttcttctttcactaatttaaatttggacatggtttctaactacgtattgaatccagaagtaactcttttttcttaggttataccattcttatttctctcttaatttcagtctccagaggtgtttgttcatgaaatattttgcttgactacactagttccttcaattctggctatctttatttattgttaattgtaattactgtcatataacaggttacttgggatgacgagaaagagtgcttcagaacagtagcttctgctgtaggaaacttctatgcacttcatcccccaatccttccaaatccatctgggaatggcattcatttatacaagaaaaatagagattcaatggctgatgaacatgctgagaatgatctaatatcaggtgagctctttgcatacttgatatttgtattttagaaccattgaagtgtgtacggaacagatatgccaaactgtaaccttagtagacaaactgcacacggattttcccccagtcagatagcatggcatgggatttgacaacatatctaacaagattccattgcatgtgatgctacagctagatattcatggtcaattgtagcattgagtttatgtgtttttgattcaaagttaactgctagtggttctaaataccaactgcactacagatgaaaatgacgttgatcaagaacttcttgcggaagcagaagcagcatgggcccaacgtgagtggaccattcagcatgtcttgtttccatccatgcgacttttcctcaagcccccgaagtcaatggcaacagatggaacgtttgtgcaggttccttctgatctttagtaaacatatgtgcttctattttttgaattaaaatagatatggcttaaccactgaaactttacttttaaaattaaaagctcattttggcatcctaattttcttatcatgcttctacaattttatgcttactgttccaagcattggcattatattgttcaaaaacctaatggtgttgtgaattatttgatactccctccgtcccaaaatatgcctaccttggatggagggagtagaaattaaattggaaaatatttaaattttagctgcacaaacagaaaaatgatactttagaagcagcaatgtcttgaagtccaggccacatacttgtaacggtactttaaaaagatcatctagttttctgtaggcaacttaaaacataaaaagaaatgaaatgaatatatgttctaacaagtagaattacgaatcacaattactgatgataagttgataacatctgctaatttctgactttgattttgaacttattatgcaggttgcttccttggagaaactctacaagatttttgaaaggtgttagctcataagtgagaaaatgaaggcagagtaagatcatgattcatggagtgtttttgaaaatgtgtataatttcaccgtattatgtactttgatagtgtctgtagaaactgaagaaagaaagatggctttacttctgaattgaaagttaacgatgccagcaattgtatattctgatcaaacattggcgtctactactctactagcaagtgatcttccttagctccaggtcgacaagaatcaagaatgtgtgtgttgtacccaatttatttagccaaaatgaaaaggtatattttctaagttcaaaaattcaaatc
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| CDS seq | atggacgagccttcgccgcgcggaggtgggtgcgccggggagccgccccgcatccggaggttggaggagtcggtggtgaaccgcatcgcggcgggggaggtgatccagcggccgtcgtcggcggtgaaggagctcatcgagaacagcctcgacgctggcgcctccagcgtctccgttgcggtgaaggacggtggcctcaagctcatccaggtctccgatgacggccatggcatcaggtttgaggatttggcaatattgtgcgaaaggcatactacctcaaagttatctgcatacgaggatctgcagaccataaaatcgatggggttcagaggggaggctttggctagtatgacttatgttggccatgttaccgtgacaacgataacagaaggccaattgcacggctacagggtttcttacagagatggtgtaatggagaatgagcctaagccttgcgctgcggtgaaaggaactcaagtcatggttgaaaatctattttacaacatggtagcccgcaagaaaacattgcagaactccaatgatgactaccccaagatcgtagacttcatcagtcggtttgcagtccatcacatcaacgttaccttctcttgcagaaagcatggagccaatagagcagatgttcatagtgcaagtacatcctcaaggttagatgctatcaggagtgtctatggggcttctgtcgttcgtgatctcatagaaataaaggtttcatatgaggatgctgcagattcaatcttcaagatggatggttacatctcaaatgcaaattatgtggcaaagaagattacaatgattcttttcataaatgataggcttgtagactgtactgctttgaaaagagctattgaatttgtgtactctgcaacattgcctcaagcatccaaacctttcatatacatgtccatacatcttccatcagaacacgtggatgttaatatacacccaaccaagaaagaggttagccttttgaatcaagagcgtattattgaaacaataagaaatgctattgaggaaaaactgatgaattctaatacaaccaggatattccaaactcaggcattaaacttatcagggattgctcaagctaacccacaaaaggataaggtttctgaggccagtatgggttctggaacaaaatctcaaaaaattcctgtgagccaaatggtcagaacagatccacgcaatccatctggaagattgcacacctactggcacgggcaatcttcaaatcttgaaaagaaatttgatcttgtatctgtaagaaatgttgtaagatcaaggagaaaccaaaaagatgctggtgatttgtcaagccgtcatgagctccttgtggaaatagattctagcttccatcctggccttttggacattgtcaagaactgcacatatgttggacttgccgatgaagcctttgctttgatacaacacaatacccgcttataccttgtaaatgtggtaaatattagtaaagaacttatgtaccagcaagctttgtgccgttttgggaacttcaatgctattcagctcagtgaaccagctccacttcaggagttgctggtgatggcactgaaagacgatgaattgatgagtgatgaaaaggatgatgagaaactggagattgcagaagtaaacactgagatactaaaagaaaatgctgagatgattaatgagtacttttctattcacattgatcaagatggcaaattgacaagacttcctgttgtactggaccagtacacccctgatatggaccgtcttccagaatttgtgttggctttaggaaatgatgttacttgggatgacgagaaagagtgcttcagaacagtagcttctgctgtaggaaacttctatgcacttcatcccccaatccttccaaatccatctgggaatggcattcatttatacaagaaaaatagagattcaatggctgatgaacatgctgagaatgatctaatatcagatgaaaatgacgttgatcaagaacttcttgcggaagcagaagcagcatgggcccaacgtgagtggaccattcagcatgtcttgtttccatccatgcgacttttcctcaagcccccgaagtcaatggcaacagatggaacgtttgtgcaggttgcttccttggagaaactctacaagatttttgaaaggtgttag
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| Protein seq | MDEPSPRGGGCAGEPPRIRRLEESVVNRIAAGEVIQRPSSAVKELIENSLDAGASSVSVAVKDGGLKLIQVSDDGHGIRFEDLAILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYVGHVTVTTITEGQLHGYRVSYRDGVMENEPKPCAAVKGTQVMVENLFYNMVARKKTLQNSNDDYPKIVDFISRFAVHHINVTFSCRKHGANRADVHSASTSSRLDAIRSVYGASVVRDLIEIKVSYEDAADSIFKMDGYISNANYVAKKITMILFINDRLVDCTALKRAIEFVYSATLPQASKPFIYMSIHLPSEHVDVNIHPTKKEVSLLNQERIIETIRNAIEEKLMNSNTTRIFQTQALNLSGIAQANPQKDKVSEASMGSGTKSQKIPVSQMVRTDPRNPSGRLHTYWHGQSSNLEKKFDLVSVRNVVRSRRNQKDAGDLSSRHELLVEIDSSFHPGLLDIVKNCTYVGLADEAFALIQHNTRLYLVNVVNISKELMYQQALCRFGNFNAIQLSEPAPLQELLVMALKDDELMSDEKDDEKLEIAEVNTEILKENAEMINEYFSIHIDQDGKLTRLPVVLDQYTPDMDRLPEFVLALGNDVTWDDEKECFRTVASAVGNFYALHPPILPNPSGNGIHLYKKNRDSMADEHAENDLISDENDVDQELLAEAEAAWAQREWTIQHVLFPSMRLFLKPPKSMATDGTFVQVASLEKLYKIFERC |
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| Function | DNA mismatch repair protein MLH1 [UniProtKB/Swiss-Prot:Q9ZRV4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0047670 | OsCMeo_01g0047670.01 | Chr01 | 43405872 | 43411855 | + | NAM | ||
| CDS seq | atggacgagccttcgccgcgcggaggtgggtgcgccggggagccgccccgcatccggaggttggaggagtcggtggtgaaccgcatcgcggcgggggaggtgatccagcggccgtcgtcggcggtgaaggagctcatcgagaacagcctcgacgctggcgcctccagcgtctccgttgcggtgaaggacggtggcctcaagctcatccaggtctccgatgacggccatggcatcaggtttgaggatttggcaatattgtgcgaaaggcatactacctcaaagttatctgcatacgaggatctgcagaccataaaatcgatggggttcagaggggaggctttggctagtatgacttatgttggccatgttaccgtgacaacgataacagaaggccaattgcacggctacagggtttcttacagagatggtgtaatggagaatgagcctaagccttgcgctgcggtgaaaggaactcaagtcatggttgaaaatctattttacaacatggtagcccgcaagaaaacattgcagaactccaatgatgactaccccaagatcgtagacttcatcagtcggtttgcagtccatcacatcaacgttaccttctcttgcagaaagcatggagccaatagagcagatgttcatagtgcaagtacatcctcaaggttagatgctatcaggagtgtctatggggcttctgtcgttcgtgatctcatagaaataaaggtttcatatgaggatgctgcagattcaatcttcaagatggatggttacatctcaaatgcaaattatgtggcaaagaagattacaatgattcttttcataaatgataggcttgtagactgtactgctttgaaaagagctattgaatttgtgtactctgcaacattgcctcaagcatccaaacctttcatatacatgtccatacatcttccatcagaacacgtggatgttaatatacacccaaccaagaaagaggttagccttttgaatcaagagcgtattattgaaacaataagaaatgctattgaggaaaaactgatgaattctaatacaaccaggatattccaaactcaggcattaaacttatcagggattgctcaagctaacccacaaaaggataaggtttctgaggccagtatgggttctggaacaaaatctcaaaaaattcctgtgagccaaatggtcagaacagatccacgcaatccatctggaagattgcacacctactggcacgggcaatcttcaaatcttgaaaagaaatttgatcttgtatctgtaagaaatgttgtaagatcaaggagaaaccaaaaagatgctggtgatttgtcaagccgtcatgagctccttgtggaaatagattctagcttccatcctggccttttggacattgtcaagaactgcacatatgttggacttgccgatgaagcctttgctttgatacaacacaatacccgcttataccttgtaaatgtggtaaatattagtaaagaacttatgtaccagcaagctttgtgccgttttgggaacttcaatgctattcagctcagtgaaccagctccacttcaggagttgctggtgatggcactgaaagacgatgaattgatgagtgatgaaaaggatgatgagaaactggagattgcagaagtaaacactgagatactaaaagaaaatgctgagatgattaatgagtacttttctattcacattgatcaagatggcaaattgacaagacttcctgttgtactggaccagtacacccctgatatggaccgtcttccagaatttgtgttggctttaggaaatgatgttacttgggatgacgagaaagagtgcttcagaacagtagcttctgctgtaggaaacttctatgcacttcatcccccaatccttccaaatccatctgggaatggcattcatttatacaagaaaaatagagattcaatggctgatgaacatgctgagaatgatctaatatcagatgaaaatgacgttgatcaagaacttcttgcggaagcagaagcagcatgggcccaacgtgagtggaccattcagcatgtcttgtttccatccatgcgacttttcctcaagcccccgaagtcaatggcaacagatggaacgtttgtgcaggttgcttccttggagaaactctacaagatttttgaaaggtgttag
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| Protein seq | MDEPSPRGGGCAGEPPRIRRLEESVVNRIAAGEVIQRPSSAVKELIENSLDAGASSVSVAVKDGGLKLIQVSDDGHGIRFEDLAILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYVGHVTVTTITEGQLHGYRVSYRDGVMENEPKPCAAVKGTQVMVENLFYNMVARKKTLQNSNDDYPKIVDFISRFAVHHINVTFSCRKHGANRADVHSASTSSRLDAIRSVYGASVVRDLIEIKVSYEDAADSIFKMDGYISNANYVAKKITMILFINDRLVDCTALKRAIEFVYSATLPQASKPFIYMSIHLPSEHVDVNIHPTKKEVSLLNQERIIETIRNAIEEKLMNSNTTRIFQTQALNLSGIAQANPQKDKVSEASMGSGTKSQKIPVSQMVRTDPRNPSGRLHTYWHGQSSNLEKKFDLVSVRNVVRSRRNQKDAGDLSSRHELLVEIDSSFHPGLLDIVKNCTYVGLADEAFALIQHNTRLYLVNVVNISKELMYQQALCRFGNFNAIQLSEPAPLQELLVMALKDDELMSDEKDDEKLEIAEVNTEILKENAEMINEYFSIHIDQDGKLTRLPVVLDQYTPDMDRLPEFVLALGNDVTWDDEKECFRTVASAVGNFYALHPPILPNPSGNGIHLYKKNRDSMADEHAENDLISDENDVDQELLAEAEAAWAQREWTIQHVLFPSMRLFLKPPKSMATDGTFVQVASLEKLYKIFERC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.516905 | 1.732964 | 4.700872 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0958900 | RBH | 0.791950 | 0.690722 | 2.562343 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g72880 | RBH | 0.604015 | 0.550383 | 0.654065 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0958900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0047710 | RBH | 0.623944 | 0.000000 | 2.350453 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0047200 | RBH | 0.049735 | 0.000000 | 1.532496 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0047080 | RBH | 0.178543 | 0.059208 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046610 | RBH | 4.019704 | 5.200077 | 7.562586 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0692900 | RBH | 4.636973 | 12.3940185 | 4.4195775 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0046110 | RBH | 0.149760 | 0.124074 | 0.496726 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0694200 | RBH | 3.035483 | 9.989991 | 25.4151 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046700 | RBH | 0.032148 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046540 | RBH | 0.330027 | 2.018543 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046870 | RBH | 0.000000 | 8.505898 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0046860 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046630 | RBH | 0.034797 | 2.147375 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046890 | RBH | 0.517582 | 1.035423 | 0.963264 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046650 | RBH | 1.225989 | 12.194691 | 3.606259 |
