Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0046830 | OGI:01121600 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:42734805-42741280 | ||||||||
| Gene Symbol | OsPR2 | ||||||||||
| DNA seq | aagaaaaaaatttggaacttttattcatgtagcattgtcaaaaaaaagggccatacagagtacatgcattaacgttcaaccaacattatttaaccatggattattcgtctctggaaatccttatttgcaccggcatggcatgctcagctgctagttcggaggaaacgtaatcgggtagaccggcgtcttgtcagggtagaagagcccaaaatgcctctcggtctcatccccgggcttctggttctcgttgaacatggcgaacacgtacgtctccagctgcccgggccgcttcggcgtcccgttcttgacgttgtcgatcacgccctggttgtgattcctcgcgttctccacgttcgccgcgaaccctcccgccgacggccacccgctctccgacacgacgacgcggacgccgggcgcgccggccttctccagcgcggcgtacacggcgtccaccatggcgttgaagaggttggtgtaggtgaggccgctgtcgttgtccctcaccgtggtgcccggctggaacgtggcgtagttgagcgggatgtcccgcgggttgtccctgtaggcgaagtaggggtacacgttggcgagcagcggcgacatggtgttggcgaggaactgcgcgatgggcaccatgaactgctgcaggtccgggcggaacacgccgtgcgacggaggggacgaggcggtgatcacgtccatcctcaccgccgtcgacaccttgatgctgttcgagaggccggcggacacgagcgcgtcgtacacgttctgcatggccgggaggatggtccccatgtcgccggggccgagctcgttgccgacggcgatgtaccggatgatgacgttcggccagtaggcctggacgttgtcacgcacccagtcggcggcggcggaggggttgttggcgaggttggccaccgcgctgctgccgccgacgtcgatgatgacggcgacgccgctgccgcgaagcgcgtcgagggcctgctggtccgggctgtagatgcgcatagcaccgataccattggacttgtacagctgcacgacctcgctctgcgacgggaggttgtcgccgttcatgccgtagcaaacaccgtggacacctgcaaaaacataggagtgcatgtttatgccaaatcagacgatttaattgatgtgtaggaaaataaaatatatatatagagagagagatatcgaatctggatttttcacattttgatacttttgaaaaacttatttcacaaatagacccctaaaaaaacttatcctagaaatggtcttttttggggcgccagagtggctggcgccgtcatccaacgggatggcgccagcctctctggcgctgtcctcctgccaccgtggcgtacgcgaaccgacgtggctccattcctgtttctctgtatggagttgcaacggtgttatttttattttattttttcggatgttttttcacactcaggatcacgatacaaccaaccacaaaaaaaatttaaactcgaactaccacttagctaagtctgaaaatatctagcataccacttagtctactttacaccttcactaaaattagaccataactcatttagtaaaaccctttgatcagcatgttaaacataatgcactctaccactatatgaaattacttaatctaattcaaaatataaccacatgaaatgacatatataagttaaacagtatatagagatgcaatttttttatttttattttatttttttgatattttttcacacttatgagaacataggaaccaaccgtataaaaaataaactcaaacggacaaaatatgtgacatgtagaattttccaaaattctaccgaaacggacaaaatatgccatctattaaaataggcgtaactttctcatacggactcggaatcaggcaaataatatatgcacggacatctacagaaaaagttacatccgattctcccccgctttgccgggttcggcgatattaaaacctccaaattccgcttgcaagattgtgttttcgaggagagaagtttttcggtggagctttggaaaattccacatgccacatatttcgtccgtttgagtttattttttacgtggttggttcttgtgagttcctaagtgtgaaaaaaatatcaaaaaaataaaataaaaaataaaaaagttgcacatctctctcctctgcactagttcggagagaggagaggagaggaaaaattctacatgtcacatattacgtccatttgagttcaatttttttatggttggttcttgtgtgtccctaagcgtgaaaaaaatatcaaacaaataaaacaaaaataaaaaatttccgggggggggggggggcgccagccactctggcgcactccccctagccacctcagcatcgccccgccacgtcggcggtgggacggcgccaaagaggctggcgccatcctgttgaacgatggcgccagccactctggcgccccaaaaaggactatttttaggataagtttttctagagatctacttgcgaaataagtttttcaaaaggaccaaaatgtgaaaaatccaggagatcgaattgcatatgagaggcagagagggttagttaattaattgattagcaatagatcagctcagcatgaaagagaaaaggaagggaaaaataagttctgaatatacctcccatttgatcaaatagctatgataactcgagctctgatctgcttgatcagtatctggagatggaattatgaatggcgcctcgatgctcgcgctcgctagctcgtgatcgtagctaggaaagaatgtccccccttatatactgcaagatggcgtgacttcttcctcttgtcaatgagacacttcaatcggttaaccagtaatcacgagatccggccgacggcggagatcacgaggtttgcctcgcgttgggattcgacttcggttatacttttgctttggaattgtgttcctttgctttattcctcctctagcatctgcccatacattccgtgtgatgaacactgcgaatcaaatgggacgtttaagatgttgttgttgtactgatagcgtgattgaattcatggcctctttctgccaagccgcatatggagttttttttggtgtttcagtttcaagtcgcggttggtgaatccgaaatcacgtgattaaaacagtaattatcgagcacggaaggaatggaatttttttaaaaaaaatgcagaacggagtaatttcttacagatcatcctgtttctgcttgatgcgatagctaatcgctgtcggtgctctattactgctccagctcaagctcgaacagcattccagcttgtcggccaaattggacatatctttcggcccaattggtttaatccccatctcttttagccgggccgcaagttatcccctcctcgtcacgctatctataggcccattattatctatctgtgttatgttttagaacaagctggaaatgctggttgagctcgagcagtagtagatagggatgaaaacagtccggaaagtttccgaattccggacgtgtttttggaaacgggaagtgtcggtcagaattttttcgaaacatttggaaacggaaacgaattccgaattctgaatttttttctcggaaacagaaacaaacatgataaggctgctattcgttggaaaccgtaatccgacggaaattttcaagaaatgaattcaaatttttttttcttagaatcgaaaagggagtatttctcatatacaactgattagtttcattcttctctactctttaatgtttaggtttatactagtattgatgtgcttaattaaatagaaatatttttagttccagtaatttagatttgtttgcatgattactttttaaatttttattagaccatgtcatactacttataattatagttatagatgaatatagttctttttctccaagaaagtaaagggtacaactagttattattattattattggtaaaaaaaaataaatatcggtttgttattttagaaaaaaatattgagctacatctctttcttaatttgaaaagttcaatttaagggctttttatattccgataagtatccgttaccgtattcgttccaaatcgtattcgttccgttttcgtatttgataaatatcctttgccgtattcccgttttcatcctagtagtagtagagcaccgacaccgattaggaaaacgtggaattgatctgagtgaaattactccgttctgcaatttttcttctaaaagattccatttcctccgcgtgcgaaataactacgaccgaatcatttttgtattaatcgagttgatatctgtttctgcgaggccgctgcccgctggaatctggagattgaagcagagaaagtgagaggaaaccaaaccgcgacttgaaacacctaacagactccatatgcggcttgtcagaaagagacaatgaattcatcaggctaccagtacaacaacatctcaaatgtcccatttgattcgcagtgttccatcacacggaatgtatagtatgagcagatgctggaggaggaagaaagcaaaggaacacaattccaaagcaaaagtataaccggagtcgaatacaaaagcgaggcaaacctcgtgatctcacgtgcgtccgaatcgaactctggtcgcctccaccgtcgtccggatcacgcagcctggccggccatccgcggcggcgggcttgcgccgccgtgctgctttggctggaagatcttggtggcagagggcagaggacccagaagtcgtcctcctcgccgtcgtcggtgtgcggcggtagcaccggggatcggtgatctcgtactcggccatcatccacccggtaacgaagggaattagtagcagcaagcgggagtagcttgagtggccataattaatccgagctggtggagcagtattctgcgttcatgatctgcatttgtgtcctctcttcaggaactgaaaagctggaaatgtttgtgtctatctgtttataggtgccatctgtttggcacaagatggtaccgatatatagtcacagcaggctgctgtcatcaaccgataaaaagatcctgaatttttttaaaaaaataaaataaaattggaattttttattcatgtagcattgtcacaaaaaaaaagggccatacagagtacatgcattaacgttcaaccaacattatttaatcatggattattcgtctctggaaatccttatttgcactggcatggtcagccgctagttcggaggaaacgtaatcgggtagaccggcgtcttgtcagggtagaagagcccaaaatgcctctcggtctcatccccgggcttctggttctcgttgaacatggcgaacacgtacgtctccagctgcccgggccgcttcggcgtcccgttcttgacgttgtcgatcacgccctggttgtgattcctcgcgttctccacgttcgccgcgaaccctcccgccgacggccacccgctctccgacacgacgacgcggacgccgggctcgccggccttctccagcgcggcgtacacggcgtccaccatggcgctgaagaggttggtgtaggtgaggccgctgtcgttgtccctcaccgtggtgcccggctggaacgtggcgtagttgagcgggatgtcgcgcgggttgtccctgtaggcaaagtaggggtacacgttggcgagcagcggcgacatggtgttggcgaggaactgcgcgatgggcaccatgaactgctgcaggtccgggcggaacacgccgtgcgacggagggaacgagtcggtgatcgcgtccatcctcaccgccgtcgacaccttgatgctgttcgagaggccggcggacacgagcgcgtcgtacacgttctgcatggccgggaggatggtccccatgtcgccggggccgagctcgttgccgacggcgatgtaccggatgatgacgttcggccagtaggcctggacgttgtcacgcacccagtcggcggcggcggaggggttgttggcgaggttggccaccgcgccgatgccgccgacgtcgatgatgacggcgatgccgctgccgcggagcgcgtcgagggccttctgatccgggctgtagatgcgcatagcaccgatgccattggacttgtacagctgcacgacctcgctctgcgacgggaggttgtcgccgttcatgccatagcaaacaccgtggacacctgcaaaaacataggagtgcatgttgataccaaatcagacgatttaattgatgtgtaaggaaataaaatagcaagagagagagaaagagagagagagatcgaattgcatatgagagggttagttaattgattagcaatagatcagctcagcatgaaagagaaaaggaaacggaaatataagctctcaatatacctcccatttgatcaaatagctatgataactcgagctctgatctgcttgatcagtatctggagatggaattatgaatggcgcctcgatgctcgcgctcgctagctcgtgatcg
More
|
||||||||||
| CDS seq | atgggaggtgtccacggtgtttgctatggcatgaacggcgacaacctcccgtcgcagagcgaggtcgtgcagctgtacaagtccaatggcatcggtgctatgcgcatctacagcccggatcagaaggccctcgacgcgctccgcggcagcggcatcgccgtcatcatcgacgtcggcggcatcggcgcggtggccaacctcgccaacaacccctccgccgccgccgactgggtgcgtgacaacgtccaggcctactggccgaacgtcatcatccggtacatcgccgtcggcaacgagctcggccccggcgacatggggaccatcctcccggccatgcagaacgtgtacgacgcgctcgtgtccgccggcctctcgaacagcatcaaggtgtcgacggcggtgaggatggacgcgatcaccgactcgttccctccgtcgcacggcgtgttccgcccggacctgcagcagttcatggtgcccatcgcgcagttcctcgccaacaccatgtcgccgctgctcgccaacgtgtacccctactttgcctacagggacaacccgcgcgacatcccgctcaactacgccacgttccagccgggcaccacggtgagggacaacgacagcggcctcacctacaccaacctcttcagcgccatggtggacgccgtgtacgccgcgctggagaaggccggcgagcccggcgtccgcgtcgtcgtgtcggagagcgggtggccgtcggcgggagggttcgcggcgaacgtggagaacgcgaggaatcacaaccagggcgtgatcgacaacgtcaagaacgggacgccgaagcggcccgggcagctggagacgtacgtgttcgccatgttcaacgagaaccagaagcccggggatgagaccgagaggcattttgggctcttctaccctgacaagacgccggtctacccgattacctacgatcacgagctagcgagcgcgagcatcgaggcgccattcataattccatctccagatactgatcaagcagatcagagctcgagtgtccacggtgtttgctacggcatgaacggcgacaacctcccgtcgcagagcgaggtcgtgcagctgtacaagtccaatggtatcggtgctatgcgcatctacagcccggaccagcaggccctcgacgcgcttcgcggcagcggcgtcgccgtcatcatcgacgtcggcggcagcagcgcggtggccaacctcgccaacaacccctccgccgccgccgactgggtgcgtgacaacgtccaggcctactggccgaacgtcatcatccggtacatcgccgtcggcaacgagctcggccccggcgacatggggaccatcctcccggccatgcagaacgtgtacgacgcgctcgtgtccgccggcctctcgaacagcatcaaggtgtcgacggcggtgaggatggacgtgatcaccgcctcgtcccctccgtcgcacggcgtgttccgcccggacctgcagcagttcatggtgcccatcgcgcagttcctcgccaacaccatgtcgccgctgctcgccaacgtgtacccctacttcgcctacagggacaacccgcgggacatcccgctcaactacgccacgttccagccgggcaccacggtgagggacaacgacagcggcctcacctacaccaacctcttcaacgccatggtggacgccgtgtacgccgcgctggagaaggccggcgcgcccggcgtccgcgtcgtcgtgtcggagagcgggtggccgtcggcgggagggttcgcggcgaacgtggagaacgcgaggaatcacaaccagggcgtgatcgacaacgtcaagaacgggacgccgaagcggcccgggcagctggagacgtacgtgttcgccatgttcaacgagaaccagaagcccggggatgagaccgagaggcattttgggctcttctaccctgacaagacgccggtctacccgattacgtttcctccgaactag
More
|
||||||||||
| Protein seq | MGGVHGVCYGMNGDNLPSQSEVVQLYKSNGIGAMRIYSPDQKALDALRGSGIAVIIDVGGIGAVANLANNPSAAADWVRDNVQAYWPNVIIRYIAVGNELGPGDMGTILPAMQNVYDALVSAGLSNSIKVSTAVRMDAITDSFPPSHGVFRPDLQQFMVPIAQFLANTMSPLLANVYPYFAYRDNPRDIPLNYATFQPGTTVRDNDSGLTYTNLFSAMVDAVYAALEKAGEPGVRVVVSESGWPSAGGFAANVENARNHNQGVIDNVKNGTPKRPGQLETYVFAMFNENQKPGDETERHFGLFYPDKTPVYPITYDHELASASIEAPFIIPSPDTDQADQSSSVHGVCYGMNGDNLPSQSEVVQLYKSNGIGAMRIYSPDQQALDALRGSGVAVIIDVGGSSAVANLANNPSAAADWVRDNVQAYWPNVIIRYIAVGNELGPGDMGTILPAMQNVYDALVSAGLSNSIKVSTAVRMDVITASSPPSHGVFRPDLQQFMVPIAQFLANTMSPLLANVYPYFAYRDNPRDIPLNYATFQPGTTVRDNDSGLTYTNLFNAMVDAVYAALEKAGAPGVRVVVSESGWPSAGGFAANVENARNHNQGVIDNVKNGTPKRPGQLETYVFAMFNENQKPGDETERHFGLFYPDKTPVYPITFPPN |
||||||||||
| Function | Glucan endo-1,3-beta-glucosidase GV [UniProtKB/Swiss-Prot:Q02438] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0046830 | OsCMeo_01g0046830.01 | Chr01 | 42734805 | 42741280 | - | NAM | ||
| CDS seq | atgggaggtgtccacggtgtttgctatggcatgaacggcgacaacctcccgtcgcagagcgaggtcgtgcagctgtacaagtccaatggcatcggtgctatgcgcatctacagcccggatcagaaggccctcgacgcgctccgcggcagcggcatcgccgtcatcatcgacgtcggcggcatcggcgcggtggccaacctcgccaacaacccctccgccgccgccgactgggtgcgtgacaacgtccaggcctactggccgaacgtcatcatccggtacatcgccgtcggcaacgagctcggccccggcgacatggggaccatcctcccggccatgcagaacgtgtacgacgcgctcgtgtccgccggcctctcgaacagcatcaaggtgtcgacggcggtgaggatggacgcgatcaccgactcgttccctccgtcgcacggcgtgttccgcccggacctgcagcagttcatggtgcccatcgcgcagttcctcgccaacaccatgtcgccgctgctcgccaacgtgtacccctactttgcctacagggacaacccgcgcgacatcccgctcaactacgccacgttccagccgggcaccacggtgagggacaacgacagcggcctcacctacaccaacctcttcagcgccatggtggacgccgtgtacgccgcgctggagaaggccggcgagcccggcgtccgcgtcgtcgtgtcggagagcgggtggccgtcggcgggagggttcgcggcgaacgtggagaacgcgaggaatcacaaccagggcgtgatcgacaacgtcaagaacgggacgccgaagcggcccgggcagctggagacgtacgtgttcgccatgttcaacgagaaccagaagcccggggatgagaccgagaggcattttgggctcttctaccctgacaagacgccggtctacccgattacctacgatcacgagctagcgagcgcgagcatcgaggcgccattcataattccatctccagatactgatcaagcagatcagagctcgagtgtccacggtgtttgctacggcatgaacggcgacaacctcccgtcgcagagcgaggtcgtgcagctgtacaagtccaatggtatcggtgctatgcgcatctacagcccggaccagcaggccctcgacgcgcttcgcggcagcggcgtcgccgtcatcatcgacgtcggcggcagcagcgcggtggccaacctcgccaacaacccctccgccgccgccgactgggtgcgtgacaacgtccaggcctactggccgaacgtcatcatccggtacatcgccgtcggcaacgagctcggccccggcgacatggggaccatcctcccggccatgcagaacgtgtacgacgcgctcgtgtccgccggcctctcgaacagcatcaaggtgtcgacggcggtgaggatggacgtgatcaccgcctcgtcccctccgtcgcacggcgtgttccgcccggacctgcagcagttcatggtgcccatcgcgcagttcctcgccaacaccatgtcgccgctgctcgccaacgtgtacccctacttcgcctacagggacaacccgcgggacatcccgctcaactacgccacgttccagccgggcaccacggtgagggacaacgacagcggcctcacctacaccaacctcttcaacgccatggtggacgccgtgtacgccgcgctggagaaggccggcgcgcccggcgtccgcgtcgtcgtgtcggagagcgggtggccgtcggcgggagggttcgcggcgaacgtggagaacgcgaggaatcacaaccagggcgtgatcgacaacgtcaagaacgggacgccgaagcggcccgggcagctggagacgtacgtgttcgccatgttcaacgagaaccagaagcccggggatgagaccgagaggcattttgggctcttctaccctgacaagacgccggtctacccgattacgtttcctccgaactag
More
|
|||||||
| Protein seq | MGGVHGVCYGMNGDNLPSQSEVVQLYKSNGIGAMRIYSPDQKALDALRGSGIAVIIDVGGIGAVANLANNPSAAADWVRDNVQAYWPNVIIRYIAVGNELGPGDMGTILPAMQNVYDALVSAGLSNSIKVSTAVRMDAITDSFPPSHGVFRPDLQQFMVPIAQFLANTMSPLLANVYPYFAYRDNPRDIPLNYATFQPGTTVRDNDSGLTYTNLFSAMVDAVYAALEKAGEPGVRVVVSESGWPSAGGFAANVENARNHNQGVIDNVKNGTPKRPGQLETYVFAMFNENQKPGDETERHFGLFYPDKTPVYPITYDHELASASIEAPFIIPSPDTDQADQSSSVHGVCYGMNGDNLPSQSEVVQLYKSNGIGAMRIYSPDQQALDALRGSGVAVIIDVGGSSAVANLANNPSAAADWVRDNVQAYWPNVIIRYIAVGNELGPGDMGTILPAMQNVYDALVSAGLSNSIKVSTAVRMDVITASSPPSHGVFRPDLQQFMVPIAQFLANTMSPLLANVYPYFAYRDNPRDIPLNYATFQPGTTVRDNDSGLTYTNLFNAMVDAVYAALEKAGAPGVRVVVSESGWPSAGGFAANVENARNHNQGVIDNVKNGTPKRPGQLETYVFAMFNENQKPGDETERHFGLFYPDKTPVYPITFPPN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 6.183131 | 0.370799 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0946500 | SBH | 0.444494 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71810 | SBH | 0.300590 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0946500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046880 | RBH | 0.0 | 104.837570 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046410 | RBH | 0.0 | 17.660618 | 0.400837 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046840 | RBH | 0.0 | 65.872742 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046310 | SBH | 0.0 | 1.685419 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045820 | RBH | 0.0 | 5.670110 | 2.668302 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0682600 | SBH | 0.138329 | 8.515384 | 0.109265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045350 | SBH | 0.0 | 5.806153 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0684900 | SBH | 0.700218 | 17.2023075 | 0.0788825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045920 | RBH | 0.0 | 1.052281 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045760 | RBH | 0.0 | 55.179989 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046080 | RBH | 0.0 | 45.084187 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0046060 | RBH | 0.0 | 6.411289 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045820 | RBH | 0.0 | 14.175983 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046100 | RBH | 0.0 | 1.454441 | 0.582187 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045910 | RBH | 0.0 | 40.686119 | 3.848478 |
