Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0043200 | OGI:01115110 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:39855155-39858651 | ||||||||
| Gene Symbol | OsSTA40 | ||||||||||
| DNA seq | tccgacctcgccgcggaaagcttctccatcgatcgatctctcctctctctcccgcgggggctctccggcgcacggtgccctctcgtgcctcggagaccccgatccgccgccgccgccgccgccgccgtgcctgagtagtacagtcttgttgtcgaggtgaggtgagtggtgggaggagaaatggacaccgggatgagggtggcgctgcaccggcaggtgtcgtcggggtcgctgaaggagagcggggagctccggcggcagtcgtcgctggagtctccccggacggggagggcggcgacgaggttcctgttcgggaggcagtcgtcgatggacccgaaccggcggcgcgggcggagccagagccccgtcggcctcgccgaggacctgaccgtgccggacaacctcgacgccaccatgcagctgctcttcctggcctgccacggcgacgccgccggcgtcgaggccctgctccgcggcggcgtcgacgtcaacagcatcaacctcgacggccgcaccgcgctgcacatcgcctcctgcgagggccaccccgacgtcgtccgcgtgctgctcacctggaaggccaacatcgacgcccgcgaccggtggggcagcacggtcagtgaccagtgttcgcaatttcggttctatcggacctatacgatatagttttggccgaaattattaatttttttcattttttcatgaatttggtaatattttgttcaaatttgatcaaattttattaaaaattcgtaaaatttcggaccgaaatttcataaattttggtatttcggccatccatgatagaaatcatcaaaccgaaacattaaaccctgtcagtgactcgtccaagacaagactcgatcaacatcaagattttcgttacattttttggttcagaaattcagattctgatttgattcgtttcttcctcgaatcgcaggctgtagctgatgccaagtgttatggccacacggaggtgtacaatcttctcaaggctcgtggtgcaaagatcccggtatctttctgcatgaacaaactgaaaattttgtcatttgctctcaattcattcggttcgtcagtttcgaagaatttgaggtttatttggtggtctttgtttctttttttgttcagagaaacaggaggacaccgatgatggtgtcgaatcctggggacgtaccagagtacgaattgaaccctagtgagctccaattcaagaaaggggatgaggtggtcaaggtaaaaactctctgtcccaattgcgttccagtgaagttggttgaagaaacattatagataagcagaaaattaatgttctaatgacgtgcgtgcatcgtacagggcgtgtaccaagttgccaaatggaatggaaccaaggttcatgttaagatacttgatagagaatgctactgcgatcaggaagtcatgtaagatgcaaatcccaaaagtcagtttcaaagtgtgcagtgaactgacctgacaagaaactaacacttgttttgttacagaaactctttcaggcatgagctgaccgtattggagaaggtccggcacccgaatgttgttcagttcgtcggagccgtcactcagaacatacctatgatgattatttctgaatacctcccaaatgtaacaagatcactgtcttttacttctgaaaaaaaaagtgttattaacaaacagtctgaataaggcactgtataccttacacacagggtgatttatcaagctgtattccgaggaaaggaaagctacatggtcagaaggttctaaaatatggccttgagatcgccaggtaaatctaccttctgagatgtggaattaaacacacttgatataatctgtaatctttttgttccacaaaacaatgatgtttaatgccaaattttgcatcagtactagttagatgctgacttgaatgccttctattgagacaacaatgcttctttgaatgttcaggggcatgacttatcttcaccagtgcaagccagaccccatcatccactgcgacctaaagccaaagtaagatgaggaaatgaagcaagcactagacttgcatacttttgagtttcattcttgtgctacaaactgctagcagttggatgctctctttcaaggttgtgccgtactttactatttgaatcttggtaaggtgccagaaatatcttcctggatagtggaggccaactgaaaatcgcaggattcggtctgacgaggctgtcgaaaatctctcctggcagagtgaaactggccgatcatgagtccatggttgacagcttcagtgagtaaaattttagtacaatgaaatgagataagaaaaaagaagacatcagtaaagtttttactgacaaactgatcttgcctcttttttggtttgttttaggtcactacactgcacctgagctgtacagaaacgaaatattcgacgcaagcgtcgacgccttctcatttggtttcatcctctatgaggtcagtgacattcatactctggtttctgaacatgatacattgttctgatgagcaatctctgtaaggagactagtcattctaatgagaattaactctttgtggtatactcagatggttgaaggaacacacactgtacatgggaagtcatcagaggaatctggccacacaattcgatatgatgggatgcgtccatcgctgaagaacaagctcaggggatatcctccagatttcaaagcgtgagttctgaaaaaacaagagcatgagatatcttgtgcatcgttgtgcaaactagtaaataaacattcatcagcttctgttcagtaacatgttaaaaactagataatcagagtgtggaaactaaattgcaggctgatcgaagaatgctgggatactcagggtatagcaaggccaacattttcagagataatcatcaggctcgacaagatatacgcccagtgcatgaagcaagggacctggaaggactcgctaaagatttggtccgtatctcggcgatttaagaatatcagatctaagcatttcagaaccaaaaagagagtccatgtcgcaatgtgaaaacataattggagatggtatgtcatcatattgtttcatgggattaattagcgactgaaacatttcttctgcattgcatttgcacttcttttttctacaggaaatgacacgtgtgggctaagctgcatgaacgccttcttgtgtacatatcactgcgaagcaaatgcgtcactctctgtgaagaagaagcctgagctagcactcactcgtctggaggaggatgacacgacgtaccgacaaatttgtgtacgtgttgtaaaaggcccggcgaaaaaaaaagtacttgtaaaagatcaatttgagttaaattggaagtaacaaagcttaattattactaccttgtgtattgttttctacgtacggtgtaacacgactcttgccattgttcaagtacaaatacacgtactgtacgtggatacgtgaccgggtcggtttgcaccgtcgccttataaagc
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| CDS seq | atggacaccgggatgagggtggcgctgcaccggcaggtgtcgtcggggtcgctgaaggagagcggggagctccggcggcagtcgtcgctggagtctccccggacggggagggcggcgacgaggttcctgttcgggaggcagtcgtcgatggacccgaaccggcggcgcgggcggagccagagccccgtcggcctcgccgaggacctgaccgtgccggacaacctcgacgccaccatgcagctgctcttcctggcctgccacggcgacgccgccggcgtcgaggccctgctccgcggcggcgtcgacgtcaacagcatcaacctcgacggccgcaccgcgctgcacatcgcctcctgcgagggccaccccgacgtcgtccgcgctgtagctgatgccaagtgttatggccacacggaggtgtacaatcttctcaaggctcgtggtgcaaagatcccgagaaacaggaggacaccgatgatggtgtcgaatcctggggacgtaccagagtacgaattgaaccctagtgagctccaattcaagaaaggggatgaggtggtcaagggcgtgtaccaagttgccaaatggaatggaaccaaggttcatgttaagatacttgatagagaatgctactgcgatcaggaagtcataaactctttcaggcatgagctgaccgtattggagaaggtccggcacccgaatgttgttcagttcgtcggagccgtcactcagaacatacctatgatgattatttctgaatacctcccaaatggtgatttatcaagctgtattccgaggaaaggaaagctacatggtcagaaggttctaaaatatggccttgagatcgccaggggcatgacttatcttcaccagtgcaagccagaccccatcatccactgcgacctaaagccaaaaaatatcttcctggatagtggaggccaactgaaaatcgcaggattcggtctgacgaggctgtcgaaaatctctcctggcagagtgaaactggccgatcatgagtccatggttgacagcttcagtcactacactgcacctgagctgtacagaaacgaaatattcgacgcaagcgtcgacgccttctcatttggtttcatcctctatgagatggttgaaggaacacacactgtacatgggaagtcatcagaggaatctggccacacaattcgatatgatgggatgcgtccatcgctgaagaacaagctcaggggatatcctccagatttcaaagcgctgatcgaagaatgctgggatactcagggtatagcaaggccaacattttcagagataatcatcaggctcgacaagatatacgcccagtgcatgaagcaagggacctggaaggactcgctaaagatttggtccgtatctcggcgatttaagaatatcagatctaagcatttcagaaccaaaaagagagtccatgtcgcaatgtga
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| Protein seq | MDTGMRVALHRQVSSGSLKESGELRRQSSLESPRTGRAATRFLFGRQSSMDPNRRRGRSQSPVGLAEDLTVPDNLDATMQLLFLACHGDAAGVEALLRGGVDVNSINLDGRTALHIASCEGHPDVVRAVADAKCYGHTEVYNLLKARGAKIPRNRRTPMMVSNPGDVPEYELNPSELQFKKGDEVVKGVYQVAKWNGTKVHVKILDRECYCDQEVINSFRHELTVLEKVRHPNVVQFVGAVTQNIPMMIISEYLPNGDLSSCIPRKGKLHGQKVLKYGLEIARGMTYLHQCKPDPIIHCDLKPKNIFLDSGGQLKIAGFGLTRLSKISPGRVKLADHESMVDSFSHYTAPELYRNEIFDASVDAFSFGFILYEMVEGTHTVHGKSSEESGHTIRYDGMRPSLKNKLRGYPPDFKALIEECWDTQGIARPTFSEIIIRLDKIYAQCMKQGTWKDSLKIWSVSRRFKNIRSKHFRTKKRVHVAM |
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| Function | Integrin-linked protein kinase 1 [UniProtKB/Swiss-Prot:F4IS56] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0043200 | OsCMeo_01g0043200.01 | Chr01 | 39855335 | 39858651 | + | NAM | ||
| CDS seq | atggacaccgggatgagggtggcgctgcaccggcaggtgtcgtcggggtcgctgaaggagagcggggagctccggcggcagtcgtcgctggagtctccccggacggggagggcggcgacgaggttcctgttcgggaggcagtcgtcgatggacccgaaccggcggcgcgggcggagccagagccccgtcggcctcgccgaggacctgaccgtgccggacaacctcgacgccaccatgcagctgctcttcctggcctgccacggcgacgccgccggcgtcgaggccctgctccgcggcggcgtcgacgtcaacagcatcaacctcgacggccgcaccgcgctgcacatcgcctcctgcgagggccaccccgacgtcgtccgcgctgtagctgatgccaagtgttatggccacacggaggtgtacaatcttctcaaggctcgtggtgcaaagatcccgagaaacaggaggacaccgatgatggtgtcgaatcctggggacgtaccagagtacgaattgaaccctagtgagctccaattcaagaaaggggatgaggtggtcaagggcgtgtaccaagttgccaaatggaatggaaccaaggttcatgttaagatacttgatagagaatgctactgcgatcaggaagtcataaactctttcaggcatgagctgaccgtattggagaaggtccggcacccgaatgttgttcagttcgtcggagccgtcactcagaacatacctatgatgattatttctgaatacctcccaaatggtgatttatcaagctgtattccgaggaaaggaaagctacatggtcagaaggttctaaaatatggccttgagatcgccaggggcatgacttatcttcaccagtgcaagccagaccccatcatccactgcgacctaaagccaaaaaatatcttcctggatagtggaggccaactgaaaatcgcaggattcggtctgacgaggctgtcgaaaatctctcctggcagagtgaaactggccgatcatgagtccatggttgacagcttcagtcactacactgcacctgagctgtacagaaacgaaatattcgacgcaagcgtcgacgccttctcatttggtttcatcctctatgagatggttgaaggaacacacactgtacatgggaagtcatcagaggaatctggccacacaattcgatatgatgggatgcgtccatcgctgaagaacaagctcaggggatatcctccagatttcaaagcgctgatcgaagaatgctgggatactcagggtatagcaaggccaacattttcagagataatcatcaggctcgacaagatatacgcccagtgcatgaagcaagggacctggaaggactcgctaaagatttggaaatga
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| Protein seq | MDTGMRVALHRQVSSGSLKESGELRRQSSLESPRTGRAATRFLFGRQSSMDPNRRRGRSQSPVGLAEDLTVPDNLDATMQLLFLACHGDAAGVEALLRGGVDVNSINLDGRTALHIASCEGHPDVVRAVADAKCYGHTEVYNLLKARGAKIPRNRRTPMMVSNPGDVPEYELNPSELQFKKGDEVVKGVYQVAKWNGTKVHVKILDRECYCDQEVINSFRHELTVLEKVRHPNVVQFVGAVTQNIPMMIISEYLPNGDLSSCIPRKGKLHGQKVLKYGLEIARGMTYLHQCKPDPIIHCDLKPKNIFLDSGGQLKIAGFGLTRLSKISPGRVKLADHESMVDSFSHYTAPELYRNEIFDASVDAFSFGFILYEMVEGTHTVHGKSSEESGHTIRYDGMRPSLKNKLRGYPPDFKALIEECWDTQGIARPTFSEIIIRLDKIYAQCMKQGTWKDSLKIWK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0043200 | OsCMeo_01g0043200.03 | Chr01 | 39855335 | 39858651 | + | NAM | ||
| CDS seq | atggacaccgggatgagggtggcgctgcaccggcaggtgtcgtcggggtcgctgaaggagagcggggagctccggcggcagtcgtcgctggagtctccccggacggggagggcggcgacgaggttcctgttcgggaggcagtcgtcgatggacccgaaccggcggcgcgggcggagccagagccccgtcggcctcgccgaggacctgaccgtgccggacaacctcgacgccaccatgcagctgctcttcctggcctgccacggcgacgccgccggcgtcgaggccctgctccgcggcggcgtcgacgtcaacagcatcaacctcgacggccgcaccgcgctgcacatcgcctcctgcgagggccaccccgacgtcgtccgcgctgtagctgatgccaagtgttatggccacacggaggtgtacaatcttctcaaggctcgtggtgcaaagatcccgagaaacaggaggacaccgatgatggtgtcgaatcctggggacgtaccagagtacgaattgaaccctagtgagctccaattcaagaaaggggatgaggtggtcaagggcgtgtaccaagttgccaaatggaatggaaccaaggttcatgttaagatacttgatagagaatgctactgcgatcaggaagtcataaactctttcaggcatgagctgaccgtattggagaaggtccggcacccgaatgttgttcagttcgtcggagccgtcactcagaacatacctatgatgattatttctgaatacctcccaaatggtgatttatcaagctgtattccgaggaaaggaaagctacatggtcagaaggttctaaaatatggccttgagatcgccaggggcatgacttatcttcaccagtgcaagccagaccccatcatccactgcgacctaaagccaaaaaatatcttcctggatagtggaggccaactgaaaatcgcaggattcggtctgacgaggctgtcgaaaatctctcctggcagagtgaaactggccgatcatgagtccatggttgacagcttcagtcactacactgcacctgagctgtacagaaacgaaatattcgacgcaagcgtcgacgccttctcatttggtttcatcctctatgagatggttgaaggaacacacactgtacatgggaagtcatcagaggaatctggccacacaattcgatatgatgggatgcgtccatcgctgaagaacaagctcaggggatatcctccagatttcaaagcgctgatcgaagaatgctgggatactcagggtatagcaaggccaacattttcagagataatcatcaggctcgacaagatatacgcccagtgcatgaagcaagggacctggaaggactcgctaaagatttggtccgtatctcggcgatttaagaatatcagatctaagcatttcagaaccaaaaagagagtccatgtcgcaatgtga
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| Protein seq | MDTGMRVALHRQVSSGSLKESGELRRQSSLESPRTGRAATRFLFGRQSSMDPNRRRGRSQSPVGLAEDLTVPDNLDATMQLLFLACHGDAAGVEALLRGGVDVNSINLDGRTALHIASCEGHPDVVRAVADAKCYGHTEVYNLLKARGAKIPRNRRTPMMVSNPGDVPEYELNPSELQFKKGDEVVKGVYQVAKWNGTKVHVKILDRECYCDQEVINSFRHELTVLEKVRHPNVVQFVGAVTQNIPMMIISEYLPNGDLSSCIPRKGKLHGQKVLKYGLEIARGMTYLHQCKPDPIIHCDLKPKNIFLDSGGQLKIAGFGLTRLSKISPGRVKLADHESMVDSFSHYTAPELYRNEIFDASVDAFSFGFILYEMVEGTHTVHGKSSEESGHTIRYDGMRPSLKNKLRGYPPDFKALIEECWDTQGIARPTFSEIIIRLDKIYAQCMKQGTWKDSLKIWSVSRRFKNIRSKHFRTKKRVHVAM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0043200 | OsCMeo_01g0043200.02 | Chr01 | 39855335 | 39858651 | + | NAM | ||
| CDS seq | atggacaccgggatgagggtggcgctgcaccggcaggtgtcgtcggggtcgctgaaggagagcggggagctccggcggcagtcgtcgctggagtctccccggacggggagggcggcgacgaggttcctgttcgggaggcagtcgtcgatggacccgaaccggcggcgcgggcggagccagagccccgtcggcctcgccgaggacctgaccgtgccggacaacctcgacgccaccatgcagctgctcttcctggcctgccacggcgacgccgccggcgtcgaggccctgctccgcggcggcgtcgacgtcaacagcatcaacctcgacggccgcaccgcgctgcacatcgcctcctgcgagggccaccccgacgtcgtccgcgctgtagctgatgccaagtgttatggccacacggaggtgtacaatcttctcaaggctcgtggtgcaaagatcccgagaaacaggaggacaccgatgatggtgtcgaatcctggggacgtaccagagtacgaattgaaccctagtgagctccaattcaagaaaggggatgaggtggtcaagggcgtgtaccaagttgccaaatggaatggaaccaaggttcatgttaagatacttgatagagaatgctactgcgatcaggaagtcataaactctttcaggcatgagctgaccgtattggagaaggtccggcacccgaatgttgttcagttcgtcggagccgtcactcagaacatacctatgatgattatttctgaatacctcccaaatggtgatttatcaagctgtattccgaggaaaggaaagctacatggtcagaaggttctaaaatatggccttgagatcgccaggggcatgacttatcttcaccagtgcaagccagaccccatcatccactgcgacctaaagccaaaaaatatcttcctggatagtggaggccaactgaaaatcgcaggattcggtctgacgaggctgtcgaaaatctctcctggcagagtgaaactggccgatcatgagtccatggttgacagcttcagtgagtaa
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| Protein seq | MDTGMRVALHRQVSSGSLKESGELRRQSSLESPRTGRAATRFLFGRQSSMDPNRRRGRSQSPVGLAEDLTVPDNLDATMQLLFLACHGDAAGVEALLRGGVDVNSINLDGRTALHIASCEGHPDVVRAVADAKCYGHTEVYNLLKARGAKIPRNRRTPMMVSNPGDVPEYELNPSELQFKKGDEVVKGVYQVAKWNGTKVHVKILDRECYCDQEVINSFRHELTVLEKVRHPNVVQFVGAVTQNIPMMIISEYLPNGDLSSCIPRKGKLHGQKVLKYGLEIARGMTYLHQCKPDPIIHCDLKPKNIFLDSGGQLKIAGFGLTRLSKISPGRVKLADHESMVDSFSE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0043200 | OsCMeo_01g0043200.04 | Chr01 | 39855155 | 39858613 | + | IsoSeq | ||
| CDS seq | atgagtccatggttgacagcttcagtcactacactgcacctgagctgtacagaaacgaaatattcgacgcaagcgtcgacgccttctcatttggtttcatcctctatgagatggttgaaggaacacacactgtacatgggaagtcatcagaggaatctggccacacaattcgatatgatgggatgcgtccat |
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| Protein seq | MSPWLTASVTTLHLSCTETKYSTQASTPSHLVSSSMRWLKEHTLYMGSHQRNLATQFDMMGCVH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr01 | 39857314 | 39857623 | + | OsCMeo_01g0043200.02 | OsCMeo_01g0043200.03,OsCMeo_01g0043200.02,OsCMeo_01g0043200.04,OsCMeo_01g0043200.01 | All |
| RI | Chr01 | 39857735 | 39858120 | + | OsCMeo_01g0043200.02 | OsCMeo_01g0043200.02,OsCMeo_01g0043200.04,OsCMeo_01g0043200.01 | All |
| RI | Chr01 | 39857992 | 39858651 | + | OsCMeo_01g0043200.03 | OsCMeo_01g0043200.03,OsCMeo_01g0043200.01 | All |
| A5 | Chr01 | 39855715 | 39856098 | + | OsCMeo_01g0043200.04 | OsCMeo_01g0043200.03,OsCMeo_01g0043200.02,OsCMeo_01g0043200.04,OsCMeo_01g0043200.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 9.873382 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0892800 | RBH | 0.070043 | 0.273335 | 5.473732 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66860 | RBH | 0.082925 | 0.173160 | 1.147719 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0892800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043260 | RBH | 0.0 | 1.414408 | 3.463333 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0042860 | RBH | 0.0 | 0.000000 | 4.931595 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0042660 | RBH | 0.0 | 0.096522 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042250 | RBH | 0.0 | 0.0 | 12.097238 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0639400 | RBH | 1.6997265 | 8.962563 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041880 | RBH | 0.0 | 0.0 | 8.153606 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0640200 | RBH | 0.8966315 | 1.423505 | 0.014337 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0042220 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042170 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0042440 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0042380 | RBH | 0.0 | 0.000000 | 0.949311 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G042650 | RBH | 0.0 | 0.0 | 2.322269 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0042350 | RBH | 0.0 | 1.917060 | 15.689843 |
