Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0040780 | OGI:01110110 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:38120774-38124052 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagggcaccagtccaacgcccaaacattgcctccggcaaatataacgaaatctgagctgcaaaagctaaaaaattattaaacataatttaatcaagatggcttcatagagtcaaatgggtatgaaaagcaaggagaagtgaaagaatatatacatggcaggtaaaaaagtattaacagtgtttatcacactgtgaggcaggtactaaataaaatgagaagtgcaaaggcacaaaaatagtattagatcagatctattttcatcaatcacaaaaaaaaaaagcaaccccccacaacccccaaccccaaaaaaagaaaaggaagaaggtttggcacgtttgccaaacccaatgtacgattgttcttctggaccaaaagaatgacccactactcccaagttgatgtggttagtagttttgaagtgtgtgcagtcaatttaagaaaccttaataactagcatactcttagtagttttggagactgtactgaaatctttaaacaagtttggagggctttcaaaataagattcaagtcccgcatctcgtgtttcatagaagacctactcaaagagatcaaaggaggtattccctgaaacctgaaaactactaaccaatagcaggaatacaatatatgttgacaattagtctgcttattggtcatgttacagcaaattatcaactagtgaattgccaaaggagctaaaataatacataagcagacatcttgggttattcctaatatcaactgagaaacttaacatagcctatctccactaacagtatgacctttattgacaaatatggggaaaaaacagacaacaagataactagattgacaagattctaaagtagtacagaaagaactccataaacaatacctgtctgttttagccttcccattgtctaggtgtgtgatctgcagtgtgatccgaacttaattatgagaatatggtccaaaaggaacaaaagatgatataagaaatctcattcagctgaacacaacaaaaaaatagcctcaagaacttagcgcaaggcaccaacagcaactgagtaataacctgggggacagatgcagacgagaactgtggtaagtttatcttgtgtgtgtcaactctggatggagctgatctggcgtcacaagtgaaactaacattttttggctcataagagaagtgcctccattctctgcaaagatatgaaataactagcagattaggtactaaataatattgattttttttttaaaaaaaagaaggcaatcagattagacaaatgaaaaagcagcttgtgaattccatttaattgatgctcagaatgactgttagaactttccacaatctgttactcttggtgctgaaaggagtcgtcctcatgtgcataagcgagctgaacacggcgaacctaaaatctgacccaactatagactatactatgccaaggaaagtggtctaacactatcagtggacaaattcaatcattgcagatagtctgtttggacaaaaggctaatggttataataaatgcagataatttatctaatgtgaactgctaatagttgacacttgacacatttggataaaaaccaatgcattgcacttagggagcaagtatatgtgacaatgtagaaattttagtcagtaaaatttaaaatgggcatggaggagaaccaacaatgcagcacgttgaaactatgcagttccaattgatgcaaatcagcttacagtgagatggatgatactagaaagctaaggttctgagcagcctttgtatggctgtaccagctgatcagtctcagttgagtttaacatccttatattggtgggtgctaaaacacagtgagtggtgctttttaaaaaaaaaaaatctttctggtgaacactgggcacataaattttttcttctactttaattggtgattaaatcaaagagtactaactagttatagcatgctactataggttgctaataactaaagctgttactgaaactgccaatcctgaatacaaagtaacagctaacaagtagtctgcacaaataaaggtggggctcactgacttagtgacttatagataaaggggatcaagtttcgctactcctctgtgccttaaaccataacatcaaatggtaagctagaaagtcacaatgtgcataaatgatcatcgatcagagtcatcaaacaacaaatgagtacagattaaggaaatatatctaccagaacaaaagtgacttaaacttagtgaattagtaataaaacaagtaacagtgcaactgcattttgttcatgacatgaaaaaaaaaatccttgtatcgttctaatcaatagaaaaacagaattgtgcattgagctaatattgttacctaaggacactggaagtaagaatatggccaattgcagtggcaaaagccaaatgaattctaatagccacaacaggaataatgaaacggcaccaaagcattcctgtgacaactgctttttttctgtttgtgtggcagcgatgtcttaggatctaaattaacaaattccaataaaatttgccaccgtgtgtggcacataaggcaatgaataaactacagagagcttacatgccacataaattttcccattgaaagctccgtgaaattgcatcaatgactaacaaattaatgctttgctgataaacgctactattaaacacaaattcgtccactccacccagctaaataggccaacaacagaaagttaccaattttgccgcggtgattaggtaccggattagacagagcaaggagggagtttctcacctgaggaaagttattgaggaggcgagccgctcgacttcggcgtcagggaagttcggctcgtgctccccggttgtgagctccgagatggcgtgcaccgctctggagaagacctccggtgactcgtcaaatacgcagacctcgacgccatccttaacctcctctccttcagtctggggcggcgcccccgtcgcctccggcggcgccgccatcgccggcgaatcgagcaaagagagagagagagagagcactatctagggcttgatgagcggttgagccgcgggaaacgagaatataggagggaatcggcccaattatgccttgtttgggtttttgggtcgagaagtgcaagttccgccaagggcttgagatcggcccaattaagcagagcacgccaaatccggtggcgagcaacgccggtggaggcctccgccgtggtccaggctctcgcgagccccacacgacggaggcgcggagcagcagccgcccgctgcttgcgtgcg
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| CDS seq | atggcggcgccgccggaggcgacgggggcgccgccccagactgaaggagaggaggttaaggatggcgtcgaggtctgcgtatttgacgagtcaccggaggtcttctccagagcggtgcacgccatctcggagctcacaaccggggagcacgagccgaacttccctgacgccgaagtcgagcggctcgcctcctcaataactttcctcagagaatggaggcacttctcttatgagccaaaaaatgttagtttcacttgtgacgccagatcagctccatccagagttgacacacacaagataaacttaccacagttctcgtctgcatctgtcccccagctcagatttcgttatatttgccggaggcaatgtttgggcgttggactggtgccctag |
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| Protein seq | MAAPPEATGAPPQTEGEEVKDGVEVCVFDESPEVFSRAVHAISELTTGEHEPNFPDAEVERLASSITFLREWRHFSYEPKNVSFTCDARSAPSRVDTHKINLPQFSSASVPQLRFRYICRRQCLGVGLVP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0040780 | OsCMeo_01g0040780.01 | Chr01 | 38120774 | 38124052 | - | NAM | ||
| CDS seq | atggcggcgccgccggaggcgacgggggcgccgccccagactgaaggagaggaggttaaggatggcgtcgaggtctgcgtatttgacgagtcaccggaggtcttctccagagcggtgcacgccatctcggagctcacaaccggggagcacgagccgaacttccctgacgccgaagtcgagcggctcgcctcctcaataactttcctcagagaatggaggcacttctcttatgagccaaaaaatgttagtttcacttgtgacgccagatcagctccatccagagttgacacacacaagataaacttaccacagttctcgtctgcatctgtcccccagctcagatttcgttatatttgccggaggcaatgtttgggcgttggactggtgccctag
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| Protein seq | MAAPPEATGAPPQTEGEEVKDGVEVCVFDESPEVFSRAVHAISELTTGEHEPNFPDAEVERLASSITFLREWRHFSYEPKNVSFTCDARSAPSRVDTHKINLPQFSSASVPQLRFRYICRRQCLGVGLVP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 3.391133 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g63910 | RBH | 3.123481 | 2.727529 | 0.535681 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0040890 | RBH | 1.449208 | 2.168108 | 2.968879 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0040390 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0013300 | SBH | 1.394246 | 5.157963 | 10.243990 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0040250 | RBH | 0.232580 | 0.116032 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0039820 | RBH | 10.734087 | 8.242414 | 13.033890 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0610100 | RBH | 4.943521 | 15.333343 | 8.9709185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0039490 | RBH | 0.313932 | 0.096417 | 0.886032 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0609400 | RBH | 4.8848435 | 13.803303 | 8.2295025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0039850 | RBH | 0.246063 | 0.145316 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0039790 | RBH | 0.715119 | 0.550689 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0040030 | RBH | 3.945022 | 3.022622 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0040000 | RBH | 1.446587 | 0.556553 | 0.721063 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0039880 | RBH | 0.385373 | 1.621924 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G040330 | RBH | 1.083749 | 1.816403 | 2.098737 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0040020 | RBH | 3.039089 | 2.631671 | 5.165588 |
