Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0036760 | OGI:01101330 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:34874986-34877205 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcaatgaaacagtaggatagttgctggttcactgtaatattcgaaaaatgatatattttcagaactgaatattcaaaatgaaggaattgctcttcagtgctcaaatacagccataatattctgtagttaagctaaagaattgcttcggctcctttgtgtttcatgaaatctattgagtgacaccgagaagaaagatcagcgaaaggaaactcacttgattcaacattgcattctacttatctgacttcctgcttatcacagttcatccacactccatccttgtcacaggggaaagattctaatttgctacacctgaagacctccaggaaggtcaggtttgggaatgcctcatgcaattgggtccattccacctctaagtcatctaagaatttcaggcgcaatatctcaactttccacatctctgacgtgctcccatctccaaaagtatttagcattccgcctgtaaaatacagtttcttcagtcccagtagcttactcggactcaaccagcttggtatcttctttccagggaagcaacgaaggtctagctttttaagatttggaggaagggataatgaagttaacattgccgttgccacagaagcttgttggtcctttcctttcgacagcactgatacagcccatgtaatagtcagtgaacgaaggcctttgatgttctcaagttcattcagttcatctcctgtcactgcaactttacttccaatatatacgctcagtttgttcagtttctccaatctgaccaactccgccactcgacaattataattgcttgtggaaccaccaataacaaaccctttcagcacttggagttctgtaagcaaaccaatcccccttggcatgccctctagcaggtagcattctgacacatcaaggtgggtgagcatctgaagagaggtgatgctctcagtcagcctctcaagattatgacaagcatgaagatccaggatcatgagatttgagagttcaccaatagaagcaggaagcgcagttattctggagataccccgtaggcagagatattttatttgtttggacaactgcagtccttccagaaattcagtactgtcaacctcgatatggtgtcgatacaagttatgccatcgacctagttggagcaccgcaatcttcctcaaatccaagaaccaactcttgtcaaactggaggtatcgctcattcacattaaatattgtgagcaggccgtctgtattgggttggtttttgaccggtgatatttctatttcttgcttatattcttcaactagacaagcacggtgagttcctgaaaagtcccatgttgcattgccttccgaatcaaattcaaaaaattgtgcttttcttgcaacagtaatcaacatacggcgaatccaagggtgcaacttacattcactgacgctacaactgcgtttcacgtgcacaggttcaatcatatccctagcaataagcttgtcaaagcaatccttcccaacatcttccgcagtttgatttcttgtggctgctactaagccctcacctatccaccaatggatcatggccctcttgctgatgatagaattttctgggaagatagagaagcacaataggcacagtttgagctgcagatcaagattatcataactgagctgcaaggtagacatggtggagttttcaaggattttcctttcgatctccagccttctccattcctctgaaacattcgctggcaacaatttagctggcgaagatgctggtaaaagtggaggaactgatggcttgatcacaggaacatgaagaggaagtttcatgcgatcttttaagttggacatttcagcattgacaatttgaagcttcaaacatattgaattcaggtgactttcttcttctacaatgtcatccaagtaccgagctatccctccaaagtcatcgattatctcattttcccatcttgataccctctgtagtatattctccacttcgtaagcttctttctcaatattttgaaacagatgtttaatctctaaaaatgaactgtcctcatctagttttagaaaaagaagtcttgcttttgataattgcattagaaagggggacacaacttcgtccagtgctcgttcctgtgacatcgtgatttctgcaactgcaatcacctgaaacagagctgacaatgtgaaaaagaggaaggtacttggatgtgcttggattcaataatatctctaaacatga
More
|
||||||||||
| CDS seq | atgtcacaggaacgagcactggacgaagttgtgtccccctttctaatgcaattatcaaaagcaagacttctttttctaaaactagatgaggacagttcatttttagagattaaacatctgtttcaaaatattgagaaagaagcttacgaagtggagaatatactacagagggtatcaagatgggaaaatgagataatcgatgactttggagggatagctcggtacttggatgacattgtagaagaagaaagtcacctgaattcaatatgtttgaagcttcaaattgtcaatgctgaaatgtccaacttaaaagatcgcatgaaacttcctcttcatgttcctgtgatcaagccatcagttcctccacttttaccagcatcttcgccagctaaattgttgccagcgaatttgtccaaacaaataaaatatctctgcctacggggtatctccagaataactgcgcttcctgcttctattggtgaactctcaaatctcatgatcctggatcttcatgcttgtcataatcttgagaggctgactgagagcatcacctctcttcagatgctcacccaccttgatgtgtcagaatgctacctgctagagggcatgccaagggggattggtttgcttacagaactccaagtgctgaaagggtttgttattggtggttccacaagcaattataattgtcgagtggcggagttggtcagattggagaaactgaacaaactgagcgtatatattggaagtaaagttgcagtgacaggagatgaactgaatgaacttgagaacatcaaaggccttcgttcactgactattacatgggctgtatcagtgctgtcgaaaggaaaggaccaacaagcttctgtggcaacggcaatgttaacttcattatcccttcctccaaatcttaaaaagctagaccttcgttgcttccctggaaagaagataccaagctggttgagtccgagtaagctactgggactgaagaaactgtattttacaggcggaatgctaaatacttttggagatgggagcacgtcagagatgtggaaagttgagatattgcgcctgaaattcttagatgacttagaggtggaatggacccaattgcatgaggcattcccaaacctgaccttcctggaggtcttcaggtgtagcaaattagaatctttcccctgtgacaaggatggagtgtggatgaactgtgataagcaggaagtcagataa
More
|
||||||||||
| Protein seq | MSQERALDEVVSPFLMQLSKARLLFLKLDEDSSFLEIKHLFQNIEKEAYEVENILQRVSRWENEIIDDFGGIARYLDDIVEEESHLNSICLKLQIVNAEMSNLKDRMKLPLHVPVIKPSVPPLLPASSPAKLLPANLSKQIKYLCLRGISRITALPASIGELSNLMILDLHACHNLERLTESITSLQMLTHLDVSECYLLEGMPRGIGLLTELQVLKGFVIGGSTSNYNCRVAELVRLEKLNKLSVYIGSKVAVTGDELNELENIKGLRSLTITWAVSVLSKGKDQQASVATAMLTSLSLPPNLKKLDLRCFPGKKIPSWLSPSKLLGLKKLYFTGGMLNTFGDGSTSEMWKVEILRLKFLDDLEVEWTQLHEAFPNLTFLEVFRCSKLESFPCDKDGVWMNCDKQEVR |
||||||||||
| Function | Disease resistance RPP13-like protein 4 [UniProtKB/Swiss-Prot:Q38834] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0036760 | OsCMeo_01g0036760.01 | Chr01 | 34874986 | 34877205 | - | NAM | ||
| CDS seq | atgtcacaggaacgagcactggacgaagttgtgtccccctttctaatgcaattatcaaaagcaagacttctttttctaaaactagatgaggacagttcatttttagagattaaacatctgtttcaaaatattgagaaagaagcttacgaagtggagaatatactacagagggtatcaagatgggaaaatgagataatcgatgactttggagggatagctcggtacttggatgacattgtagaagaagaaagtcacctgaattcaatatgtttgaagcttcaaattgtcaatgctgaaatgtccaacttaaaagatcgcatgaaacttcctcttcatgttcctgtgatcaagccatcagttcctccacttttaccagcatcttcgccagctaaattgttgccagcgaatttgtccaaacaaataaaatatctctgcctacggggtatctccagaataactgcgcttcctgcttctattggtgaactctcaaatctcatgatcctggatcttcatgcttgtcataatcttgagaggctgactgagagcatcacctctcttcagatgctcacccaccttgatgtgtcagaatgctacctgctagagggcatgccaagggggattggtttgcttacagaactccaagtgctgaaagggtttgttattggtggttccacaagcaattataattgtcgagtggcggagttggtcagattggagaaactgaacaaactgagcgtatatattggaagtaaagttgcagtgacaggagatgaactgaatgaacttgagaacatcaaaggccttcgttcactgactattacatgggctgtatcagtgctgtcgaaaggaaaggaccaacaagcttctgtggcaacggcaatgttaacttcattatcccttcctccaaatcttaaaaagctagaccttcgttgcttccctggaaagaagataccaagctggttgagtccgagtaagctactgggactgaagaaactgtattttacaggcggaatgctaaatacttttggagatgggagcacgtcagagatgtggaaagttgagatattgcgcctgaaattcttagatgacttagaggtggaatggacccaattgcatgaggcattcccaaacctgaccttcctggaggtcttcaggtgtagcaaattagaatctttcccctgtgacaaggatggagtgtggatgaactgtgataagcaggaagtcagataa
More
|
|||||||
| Protein seq | MSQERALDEVVSPFLMQLSKARLLFLKLDEDSSFLEIKHLFQNIEKEAYEVENILQRVSRWENEIIDDFGGIARYLDDIVEEESHLNSICLKLQIVNAEMSNLKDRMKLPLHVPVIKPSVPPLLPASSPAKLLPANLSKQIKYLCLRGISRITALPASIGELSNLMILDLHACHNLERLTESITSLQMLTHLDVSECYLLEGMPRGIGLLTELQVLKGFVIGGSTSNYNCRVAELVRLEKLNKLSVYIGSKVAVTGDELNELENIKGLRSLTITWAVSVLSKGKDQQASVATAMLTSLSLPPNLKKLDLRCFPGKKIPSWLSPSKLLGLKKLYFTGGMLNTFGDGSTSEMWKVEILRLKFLDDLEVEWTQLHEAFPNLTFLEVFRCSKLESFPCDKDGVWMNCDKQEVR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.220844 | 0.0 | 1.257510 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0799000 | RBH | 0.307265 | 0.086279 | 0.362942 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g58520 | RBH | 0.414787 | 0.225735 | 0.132451 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0799000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036890 | RBH | 0.0 | 2.507986 | 1.011122 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0036380 | RBH | 0.246102 | 0.0 | 0.152798 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0021790 | SBH | 0.000000 | 0.499754 | 1.892815 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0036170 | RBH | 0.100756 | 0.037667 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0035780 | RBH | 0.000000 | 3.207355 | 2.320183 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0558000 | RBH | 0.687833 | 8.052821 | 0.717718 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0035510 | RBH | 0.000000 | 0.000000 | 0.172515 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0555800 | RBH | 0.721357 | 7.332667 | 1.101746 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0035630 | RBH | 0.052902 | 0.155184 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0035710 | RBH | 0.0 | 3.285079 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0035940 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0036010 | RBH | 0.000000 | 0.152444 | 0.294010 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0035800 | RBH | 0.000000 | 0.885484 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G036290 | RBH | 0.000000 | 0.902109 | 0.273584 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0036020 | RBH | 0.294644 | 0.000000 | 0.501223 |
