Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0032120 | OGI:01066360 | 14/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:31232332-31233440 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagatgagattgcaggttctgttgatttgctcttccctttctttctgtgtgaaacctcttgaaaactgatttcttcctccttgtcttcttcctctcttagtctttctatatctgaatcagtaggtattgcacatttctccaactcatcatcccacaaagcagcatcaatcttcccagaaaactccttctcttgagagtgcagaggagcagatagagagaagtcaatttcctgggattcttgttccatagggactatctccatctttttctcccacaacaccagctcagttgactctgtgtgctttggttcctgctgtagtgacactaactctttctttttttctttctccaaaaccagttctgaggatgagatagtagaggttttcttagaggcaatcttcttgacataaccactcttatattccttgcctttgtaagcaggtggcgcagagtgtccaccccttgatgaagcacctgtattctggttctgtctacctctagtagggctttgcatcttgtaatcctcatcaacattcatgtcttcattgccgtcattctcgtctttgtcatctttgtcatcgtcatcagggtgaattggtctattctcaatagacgaatacccttctggctcccatctgattaagtatcccactttgttgatatagacatgcatcccgaagtgtaattccctagggtccttacaagcaactctcactctgattggaccatctcttctgatactagcaccatctagagcttcaaattcccccaccaactcagcaatggacttaatagcatcctcattcctagcaatctttggtatgccatatactttgacccaaacagcaactagctcatcaacagcctcttctgtcatacctgtctccaccacactagccttgattagagaggtctcaaaatcaaagctcttgcaagtggatattttacttctcacatcatccgatggaaagttgattaaaaactctttgtcattaagctgctttactttccattcccattgcaaccccacaactttctttagttcaacaaatagcagctgaacatttggctttggcctgacatttcccgtggaatgcaagattaacat
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| CDS seq | atgttaatcttgcattccacgggaaatgtcaggccaaagccaaatgttcagctgctatttgttgaactaaagaaagttgtggggttgcaatgggaatggaaagtaaagcagcttaatgacaaagagtttttaatcaactttccatcggatgatgtgagaagtaaaatatccacttgcaagagctttgattttgagacctctctaatcaaggctagtgtggtggagacaggtatgacagaagaggctgttgatgagctagttgctgtttgggtcaaagtatatggcataccaaagattgctaggaatgaggatgctattaagtccattgctgagttggtgggggaatttgaagctctagatggtgctagtatcagaagagatggtccaatcagagtgagagttgcttgtaaggaccctagggaattacacttcgggatgcatgtctatatcaacaaagtgggatacttaatcagatgggagccagaagggtattcgtctattgagaatagaccaattcaccctgatgacgatgacaaagatgacaaagacgagaatgacggcaatgaagacatgaatgttgatgaggattacaagatgcaaagccctactagaggtagacagaaccagaatacaggtgcttcatcaaggggtggacactctgcgccacctgcttacaaaggcaaggaatataagagtggttatgtcaagaagattgcctctaagaaaacctctactatctcatcctcagaactggttttggagaaagaaaaaaagaaagagttagtgtcactacagcaggaaccaaagcacacagagtcaactgagctggtgttgtgggagaaaaagatggagatagtccctatggaacaagaatcccaggaaattgacttctctctatctgctcctctgcactctcaagagaaggagttttctgggaagattgatgctgctttgtgggatgatgagttggagaaatgtgcaatacctactgattcagatatagaaagactaagagaggaagaagacaaggaggaagaaatcagttttcaagagaaagaaagggaagagcaaatcaacagaacctgcaatctcatctag
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| Protein seq | MLILHSTGNVRPKPNVQLLFVELKKVVGLQWEWKVKQLNDKEFLINFPSDDVRSKISTCKSFDFETSLIKASVVETGMTEEAVDELVAVWVKVYGIPKIARNEDAIKSIAELVGEFEALDGASIRRDGPIRVRVACKDPRELHFGMHVYINKVGYLIRWEPEGYSSIENRPIHPDDDDKDDKDENDGNEDMNVDEDYKMQSPTRGRQNQNTGASSRGGHSAPPAYKGKEYKSGYVKKIASKKTSTISSSELVLEKEKKKELVSLQQEPKHTESTELVLWEKKMEIVPMEQESQEIDFSLSAPLHSQEKEFSGKIDAALWDDELEKCAIPTDSDIERLREEEDKEEEISFQEKEREEQINRTCNLI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0032120 | OsCMeo_01g0032120.01 | Chr01 | 31232332 | 31233440 | - | NAM | ||
| CDS seq | atgttaatcttgcattccacgggaaatgtcaggccaaagccaaatgttcagctgctatttgttgaactaaagaaagttgtggggttgcaatgggaatggaaagtaaagcagcttaatgacaaagagtttttaatcaactttccatcggatgatgtgagaagtaaaatatccacttgcaagagctttgattttgagacctctctaatcaaggctagtgtggtggagacaggtatgacagaagaggctgttgatgagctagttgctgtttgggtcaaagtatatggcataccaaagattgctaggaatgaggatgctattaagtccattgctgagttggtgggggaatttgaagctctagatggtgctagtatcagaagagatggtccaatcagagtgagagttgcttgtaaggaccctagggaattacacttcgggatgcatgtctatatcaacaaagtgggatacttaatcagatgggagccagaagggtattcgtctattgagaatagaccaattcaccctgatgacgatgacaaagatgacaaagacgagaatgacggcaatgaagacatgaatgttgatgaggattacaagatgcaaagccctactagaggtagacagaaccagaatacaggtgcttcatcaaggggtggacactctgcgccacctgcttacaaaggcaaggaatataagagtggttatgtcaagaagattgcctctaagaaaacctctactatctcatcctcagaactggttttggagaaagaaaaaaagaaagagttagtgtcactacagcaggaaccaaagcacacagagtcaactgagctggtgttgtgggagaaaaagatggagatagtccctatggaacaagaatcccaggaaattgacttctctctatctgctcctctgcactctcaagagaaggagttttctgggaagattgatgctgctttgtgggatgatgagttggagaaatgtgcaatacctactgattcagatatagaaagactaagagaggaagaagacaaggaggaagaaatcagttttcaagagaaagaaagggaagagcaaatcaacagaacctgcaatctcatctag
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| Protein seq | MLILHSTGNVRPKPNVQLLFVELKKVVGLQWEWKVKQLNDKEFLINFPSDDVRSKISTCKSFDFETSLIKASVVETGMTEEAVDELVAVWVKVYGIPKIARNEDAIKSIAELVGEFEALDGASIRRDGPIRVRVACKDPRELHFGMHVYINKVGYLIRWEPEGYSSIENRPIHPDDDDKDDKDENDGNEDMNVDEDYKMQSPTRGRQNQNTGASSRGGHSAPPAYKGKEYKSGYVKKIASKKTSTISSSELVLEKEKKKELVSLQQEPKHTESTELVLWEKKMEIVPMEQESQEIDFSLSAPLHSQEKEFSGKIDAALWDDELEKCAIPTDSDIERLREEEDKEEEISFQEKEREEQINRTCNLI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.030478 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g37660 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0032150 | RBH | 0.000000 | 0.000000 | 0.566494 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0021080 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0031350 | RBH | 0.0 | 0.036411 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0031030 | RBH | 0.0 | 0.000000 | 1.433152 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0030760 | RBH | 0.0 | 0.000000 | 0.234306 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0031000 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0031030 | RBH | 0.0 | 4.222101 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0031230 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0031400 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0031180 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G031620 | RBH | 0.0 | 1.098060 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0031270 | RBH | 0.0 | 4.864151 | 0.0 |
