Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0030160 | OGI:01087110 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:29835571-29837193 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acatgcatttgcaagccatacgctctctgtaatatggataccaaattgggagcgcttgctctcatgctcccgcttctactgctgatttccgctactcgcgtagcctacggcggcatccaacccacgccgcctcccgcgagcttccaagccgccttggtccgcatcgagcccgcaggcatcaactacacgcgcgccgtgcagcgctcccgctcccgcctgtccatgctcgccgccagagcggtgtccaacgcgggggcggcgccgggggagagcgcgcagacgccgctgaagaaggggagcggcgactacgccatgtcgttcggcatcggcacgccggcgacggggctgtcgggcgaggcggacaccgggagcgacctcatctggaccaagtgcggcgcctgcgcgcggtgctcgccgcggggctccccgtcctactaccccaccagctccagctccgccgcgttcgtcgcgtgcggcgaccgcacgtgcggggagctgccccgaccactgtgcagcaacgtcgccggcggcggcagcggcagcggcaactgctcctaccactacgcctacggcaacgctagggacacgcaccactacacggagggcatcctcatgacggagaccttcaccttcggcgacgacgccgcggcgttcccgggcatcgcgttcgggtgcacgctccgctccgagggcggtttcgggacgggctcgggcctcgtcgggctcggcagagggaagctgtccttggtcacgcagctcaacgtcgaggccttcggctaccgcctctcgtccgacctgtccgcgcccagccccatctcgttcggctccctcgccgacgtgaccggtggcaacggcgacagtttcatgtccactccgctactcacaaacccggtggttcaggaccttccgttctactacgtcggtctgaccggcatctcggtcggcgggaagctcgtgcagataccttcggggaccttctccttcgaccggagcaccggggcgggcggcgtcatcttcgactccggtaccacgcttacgatgctcccggaccccgcgtacacgctggtgagggacgagctgctgtcacagatgggctttcagaagccaccaccggcagcgaacgacgacgacctgatctgtttcaccggggggtcgtcgacgacgacgttcccgtccatggtgctgcacttcgacggcggcgccgacatggacctgtccaccgagaattacttgccgcaaatgcaaggccagaacggggagacagcccggtgctggtccgtggtgaaatcatcgcaagccttgacgatcatcggcaatatcatgcagatggacttccacgtcgtgtttgatctgtccggcaacgcgcggatgctgttccaaccgcccaccgcctgatacgggagattatgaccgttgattttgtgcgccgtatgtagtactagcactctagcagtgtagcacgtacaattgtgccgtagcgaataagttctgcacaaattattttctgccatccgcgcttagttgtaagtacgcgagcttatgtaatagtcttccaagagaaattgaacgggcataatactgcatgtacggttacaatatacttataaacataaacgtttaaac
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| CDS seq | atggataccaaattgggagcgcttgctctcatgctcccgcttctactgctgatttccgctactcgcgtagcctacggcggcatccaacccacgccgcctcccgcgagcttccaagccgccttggtccgcatcgagcccgcaggcatcaactacacgcgcgccgtgcagcgctcccgctcccgcctgtccatgctcgccgccagagcggtgtccaacgcgggggcggcgccgggggagagcgcgcagacgccgctgaagaaggggagcggcgactacgccatgtcgttcggcatcggcacgccggcgacggggctgtcgggcgaggcggacaccgggagcgacctcatctggaccaagtgcggcgcctgcgcgcggtgctcgccgcggggctccccgtcctactaccccaccagctccagctccgccgcgttcgtcgcgtgcggcgaccgcacgtgcggggagctgccccgaccactgtgcagcaacgtcgccggcggcggcagcggcagcggcaactgctcctaccactacgcctacggcaacgctagggacacgcaccactacacggagggcatcctcatgacggagaccttcaccttcggcgacgacgccgcggcgttcccgggcatcgcgttcgggtgcacgctccgctccgagggcggtttcgggacgggctcgggcctcgtcgggctcggcagagggaagctgtccttggtcacgcagctcaacgtcgaggccttcggctaccgcctctcgtccgacctgtccgcgcccagccccatctcgttcggctccctcgccgacgtgaccggtggcaacggcgacagtttcatgtccactccgctactcacaaacccggtggttcaggaccttccgttctactacgtcggtctgaccggcatctcggtcggcgggaagctcgtgcagataccttcggggaccttctccttcgaccggagcaccggggcgggcggcgtcatcttcgactccggtaccacgcttacgatgctcccggaccccgcgtacacgctggtgagggacgagctgctgtcacagatgggctttcagaagccaccaccggcagcgaacgacgacgacctgatctgtttcaccggggggtcgtcgacgacgacgttcccgtccatggtgctgcacttcgacggcggcgccgacatggacctgtccaccgagaattacttgccgcaaatgcaaggccagaacggggagacagcccggtgctggtccgtggtgaaatcatcgcaagccttgacgatcatcggcaatatcatgcagatggacttccacgtcgtgtttgatctgtccggcaacgcgcggatgctgttccaaccgcccaccgcctga
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| Protein seq | MDTKLGALALMLPLLLLISATRVAYGGIQPTPPPASFQAALVRIEPAGINYTRAVQRSRSRLSMLAARAVSNAGAAPGESAQTPLKKGSGDYAMSFGIGTPATGLSGEADTGSDLIWTKCGACARCSPRGSPSYYPTSSSSAAFVACGDRTCGELPRPLCSNVAGGGSGSGNCSYHYAYGNARDTHHYTEGILMTETFTFGDDAAAFPGIAFGCTLRSEGGFGTGSGLVGLGRGKLSLVTQLNVEAFGYRLSSDLSAPSPISFGSLADVTGGNGDSFMSTPLLTNPVVQDLPFYYVGLTGISVGGKLVQIPSGTFSFDRSTGAGGVIFDSGTTLTMLPDPAYTLVRDELLSQMGFQKPPPAANDDDLICFTGGSSTTTFPSMVLHFDGGADMDLSTENYLPQMQGQNGETARCWSVVKSSQALTIIGNIMQMDFHVVFDLSGNARMLFQPPTA |
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| Function | Aspartic proteinase nepenthesin-1 [UniProtKB/Swiss-Prot:Q766C3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0030160 | OsCMeo_01g0030160.01 | Chr01 | 29835571 | 29837193 | + | NAM | ||
| CDS seq | atggataccaaattgggagcgcttgctctcatgctcccgcttctactgctgatttccgctactcgcgtagcctacggcggcatccaacccacgccgcctcccgcgagcttccaagccgccttggtccgcatcgagcccgcaggcatcaactacacgcgcgccgtgcagcgctcccgctcccgcctgtccatgctcgccgccagagcggtgtccaacgcgggggcggcgccgggggagagcgcgcagacgccgctgaagaaggggagcggcgactacgccatgtcgttcggcatcggcacgccggcgacggggctgtcgggcgaggcggacaccgggagcgacctcatctggaccaagtgcggcgcctgcgcgcggtgctcgccgcggggctccccgtcctactaccccaccagctccagctccgccgcgttcgtcgcgtgcggcgaccgcacgtgcggggagctgccccgaccactgtgcagcaacgtcgccggcggcggcagcggcagcggcaactgctcctaccactacgcctacggcaacgctagggacacgcaccactacacggagggcatcctcatgacggagaccttcaccttcggcgacgacgccgcggcgttcccgggcatcgcgttcgggtgcacgctccgctccgagggcggtttcgggacgggctcgggcctcgtcgggctcggcagagggaagctgtccttggtcacgcagctcaacgtcgaggccttcggctaccgcctctcgtccgacctgtccgcgcccagccccatctcgttcggctccctcgccgacgtgaccggtggcaacggcgacagtttcatgtccactccgctactcacaaacccggtggttcaggaccttccgttctactacgtcggtctgaccggcatctcggtcggcgggaagctcgtgcagataccttcggggaccttctccttcgaccggagcaccggggcgggcggcgtcatcttcgactccggtaccacgcttacgatgctcccggaccccgcgtacacgctggtgagggacgagctgctgtcacagatgggctttcagaagccaccaccggcagcgaacgacgacgacctgatctgtttcaccggggggtcgtcgacgacgacgttcccgtccatggtgctgcacttcgacggcggcgccgacatggacctgtccaccgagaattacttgccgcaaatgcaaggccagaacggggagacagcccggtgctggtccgtggtgaaatcatcgcaagccttgacgatcatcggcaatatcatgcagatggacttccacgtcgtgtttgatctgtccggcaacgcgcggatgctgttccaaccgcccaccgcctga
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| Protein seq | MDTKLGALALMLPLLLLISATRVAYGGIQPTPPPASFQAALVRIEPAGINYTRAVQRSRSRLSMLAARAVSNAGAAPGESAQTPLKKGSGDYAMSFGIGTPATGLSGEADTGSDLIWTKCGACARCSPRGSPSYYPTSSSSAAFVACGDRTCGELPRPLCSNVAGGGSGSGNCSYHYAYGNARDTHHYTEGILMTETFTFGDDAAAFPGIAFGCTLRSEGGFGTGSGLVGLGRGKLSLVTQLNVEAFGYRLSSDLSAPSPISFGSLADVTGGNGDSFMSTPLLTNPVVQDLPFYYVGLTGISVGGKLVQIPSGTFSFDRSTGAGGVIFDSGTTLTMLPDPAYTLVRDELLSQMGFQKPPPAANDDDLICFTGGSSTTTFPSMVLHFDGGADMDLSTENYLPQMQGQNGETARCWSVVKSSQALTIIGNIMQMDFHVVFDLSGNARMLFQPPTA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.172705 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0696800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g50170 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0696800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0030190 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029800 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0026250 | SBH | 0.215420 | 7.318127 | 0.338670 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0029420 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0029100 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0478600 | RBH | 0.505558 | 0.319103 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028820 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0469100 | RBH | 1.657657 | 0.3675325 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0029080 | RBH | 0.0 | 0.073871 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0029020 | RBH | 0.111259 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0029280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0029450 | RBH | 0.225239 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0029250 | RBH | 0.071060 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G029700 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0029380 | RBH | 0.0 | 2.487765 | 0.0 |
