Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0028970 | OGI:01084590 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:28851659-28854162 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caaggacctgtaggttgtaactatttcctccggaatttgggaggggtttggtttacctgtgcaagaagaggaagaagaagaagaggaggaggatgcaggacgttccgtctcctctcccggcattgagcaccgcctaccagcctctcccgtcgctgtacctcgggttcttggcgatatgggcggcctccggcttctcctgggccttcagctcctggaggagtcggcatttccaggtattgtccctgcatttgccgttctgtttggccctgaattcgggtggtatgtttggtggcatggtgcccttgttcttcagttctatgcagggtagtgtgttttgttgcagttttttattatggtgttttagaagattgattatggcttcatttgactgactgatcattgcattgggaccttagagcaacttcttctaaactgccggcagttatcagtttcagagtcatgtttcaagcgtttgattatgttagttcttgagcaattttgtttccctgcagcaggtaaataatcttcagtggatcctggctttggtgcccttgatcaaagcccttcaaatggcgctatcatttctgttctggtgagcaatctgaacttaagttaacttgacatctttgatctctgaatacttagtgatcggacttcgaacaagtccctgaagctgttcagacaaatcttttctagtactgaatttttatgggatagacaaagtactgaaattataggtggatgtgcaggtactcgtgcgtgcaccttcagacatgctcgctgtggatgtcatttggcgtgtatgtgacagggattctcttccagacggcttccttcgtttcgttcatgctcatatcacatggttactgcatcatgtgcgagcgcctctcgatcagggagaggcgaacaactgctggtttgggatgccttctctacctcagcctgatcggttacaaagctgcagttccttacttcacagtaaggcctcactggacttatttttttaaaaaatattttttgaacgggcttatcaggcttctagaattagtcatgagtacggcatattatgagatttcccatgtttggtgcaggtgtttcttctgatcaactacttcatgtcattttacatcatatttcgccgcacatcccaaaacctcatggttctaagagaacagctgaatttcatagaggaagaagacatccattcactgcacggcgcactgaacacaaagtacacaatgttcaagtaagaaattttactccactctgtatttcctatcttcctgatcatcatattcttgaaaacattttagtaccaaaactccgagaaattgtcatgtgcttatccatctcttttccccttttcaggagatttcaaggtacaatgcaggttgcagtggtggcattcatcatggtatgacttaatgcatacgtatggcattgtgttctggtatgatttgtttggtttggcagcgctcctgaattctgatagtgccatctgtgccttcaggtgtacatgagggctgatgatacaccagataactactggtttcgcgtattggtgcgtgaatgggtacagttttgcatattcatgtatattgggtgagtcaaaatcatttcttaatatagattgaagaaagtaatgcaaaacagccaaatgagatcaaagcggatgtgacgcagttcttgttcccatttttaggtggaatttcaggatacctgaagcatcactccatcttccagttgtaccccttatgaaatctacttgggagattgctatgcctcctatttacagtgtggtacgttcagtaacatgctctaaacttacacaatctataatctttgctacttagtagtatttctttaatattttctaatctgcacaagtatgaaaatttcccatgctgtcaatgtgacgacacacaggaaatggatgcagccgatttcaaaggcctcgtatcagaccactggcatgtcggagtggtatgcacaactgcactaccaaaaccactgattcttgctgctctactgtactagtactaaactcagtgagtctaacacattgtatcattgcagagaacttctcataccaactcaagttgtccttcacagccattgctagtgctagttcagaatcctagtccaaaggtttccactgctgccacagcttcgaggttacagttgaacaagaacaaccaagtttaattttgaaaccaagacgcagaagatcgcatcgaccagttgattcggaagtggtcggcataacattgttgtgctgtacagtgaaatacagggggaaaaagtttcacccctttttggtttctgttaatatttcataggaaagagcacgcaacatgtagatttgcagacaagggggtatttgctattcagcaattgtaccaccatttacagctcagagttttttttctaaagaaaaagaaaacacgtgaatttcttcatgtaaaaagaaaggagaatgtgtgcttaacacttatcagcaacaa
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| CDS seq | atgcaggacgttccgtctcctctcccggcattgagcaccgcctaccagcctctcccgtcgctgtacctcgggttcttggcgatatgggcggcctccggcttctcctgggccttcagctcctggaggagtcggcatttccaggtaaataatcttcagtggatcctggctttggtgcccttgatcaaagcccttcaaatggcgctatcatttctgttctggtactcgtgcgtgcaccttcagacatgctcgctgtggatgtcatttggcgtgtatgtgacagggattctcttccagacggcttccttcgtttcgttcatgctcatatcacatggttactgcatcatgtgcgagcgcctctcgatcagggagaggcgaacaactgctggtttgggatgccttctctacctcagcctgatcggttacaaagctgcagttccttacttcacagtgtttcttctgatcaactacttcatgtcattttacatcatatttcgccgcacatcccaaaacctcatggttctaagagaacagctgaatttcatagaggaagaagacatccattcactgcacggcgcactgaacacaaagtacacaatgttcaagagatttcaaggtacaatgcaggttgcagtggtggcattcatcatggtgtacatgagggctgatgatacaccagataactactggtttcgcgtattggtgcgtgaatgggtacagttttgcatattcatgtatattgggtggaatttcaggatacctgaagcatcactccatcttccagttgtaccccttatgaaatctacttgggagattgctatgcctcctatttacagtgtggaaatggatgcagccgatttcaaaggcctcgtatcagaccactggcatgtcggagtgagaacttctcataccaactcaagttgtccttcacagccattgctagtgctagttcagaatcctagtccaaaggtttccactgctgccacagcttcgaggttacagttgaacaagaacaaccaagtttaa
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| Protein seq | MQDVPSPLPALSTAYQPLPSLYLGFLAIWAASGFSWAFSSWRSRHFQVNNLQWILALVPLIKALQMALSFLFWYSCVHLQTCSLWMSFGVYVTGILFQTASFVSFMLISHGYCIMCERLSIRERRTTAGLGCLLYLSLIGYKAAVPYFTVFLLINYFMSFYIIFRRTSQNLMVLREQLNFIEEEDIHSLHGALNTKYTMFKRFQGTMQVAVVAFIMVYMRADDTPDNYWFRVLVREWVQFCIFMYIGWNFRIPEASLHLPVVPLMKSTWEIAMPPIYSVEMDAADFKGLVSDHWHVGVRTSHTNSSCPSQPLLVLVQNPSPKVSTAATASRLQLNKNNQV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0028970 | OsCMeo_01g0028970.01 | Chr01 | 28851659 | 28854162 | + | NAM | ||
| CDS seq | atgcaggacgttccgtctcctctcccggcattgagcaccgcctaccagcctctcccgtcgctgtacctcgggttcttggcgatatgggcggcctccggcttctcctgggccttcagctcctggaggagtcggcatttccaggtaaataatcttcagtggatcctggctttggtgcccttgatcaaagcccttcaaatggcgctatcatttctgttctggtactcgtgcgtgcaccttcagacatgctcgctgtggatgtcatttggcgtgtatgtgacagggattctcttccagacggcttccttcgtttcgttcatgctcatatcacatggttactgcatcatgtgcgagcgcctctcgatcagggagaggcgaacaactgctggtttgggatgccttctctacctcagcctgatcggttacaaagctgcagttccttacttcacagtgtttcttctgatcaactacttcatgtcattttacatcatatttcgccgcacatcccaaaacctcatggttctaagagaacagctgaatttcatagaggaagaagacatccattcactgcacggcgcactgaacacaaagtacacaatgttcaagagatttcaaggtacaatgcaggttgcagtggtggcattcatcatggtgtacatgagggctgatgatacaccagataactactggtttcgcgtattggtgcgtgaatgggtacagttttgcatattcatgtatattgggtggaatttcaggatacctgaagcatcactccatcttccagttgtaccccttatgaaatctacttgggagattgctatgcctcctatttacagtgtggaaatggatgcagccgatttcaaaggcctcgtatcagaccactggcatgtcggagtgagaacttctcataccaactcaagttgtccttcacagccattgctagtgctagttcagaatcctagtccaaaggtttccactgctgccacagcttcgaggttacagttgaacaagaacaaccaagtttaa
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| Protein seq | MQDVPSPLPALSTAYQPLPSLYLGFLAIWAASGFSWAFSSWRSRHFQVNNLQWILALVPLIKALQMALSFLFWYSCVHLQTCSLWMSFGVYVTGILFQTASFVSFMLISHGYCIMCERLSIRERRTTAGLGCLLYLSLIGYKAAVPYFTVFLLINYFMSFYIIFRRTSQNLMVLREQLNFIEEEDIHSLHGALNTKYTMFKRFQGTMQVAVVAFIMVYMRADDTPDNYWFRVLVREWVQFCIFMYIGWNFRIPEASLHLPVVPLMKSTWEIAMPPIYSVEMDAADFKGLVSDHWHVGVRTSHTNSSCPSQPLLVLVQNPSPKVSTAATASRLQLNKNNQV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 1.849072 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0466300 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g48570 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0466300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028990 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028530 | RBH | 0.0 | 1.429816 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013450 | RBH | 0.309155 | 0.0 | 0.383751 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0028150 | RBH | 0.0 | 0.125060 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027890 | RBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0463400 | RBH | 0.182709 | 0.51887 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0027620 | RBH | 0.000000 | 0.226495 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0452400 | RBH | 0.2849685 | 0.411395 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027920 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027780 | RBH | 0.0 | 4.938868 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028090 | RBH | 0.0 | 12.693059 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0028220 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027970 | RBH | 0.0 | 1.905305 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028440 | RBH | 0.0 | 0.582849 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028110 | RBH | 0.0 | 7.321286 | 0.0 |
