Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0028620 | OGI:01083830 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:28532984-28534404 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaaacatcggcggcacatggcttccaccacacccaaccgacgccccaccgccggccggcttccagtcttgccaacgacaagactgccacagcaccaaccacctccgccaggtagctgacccaagccgcctctgccacgccgcccgccggcttccccgttgaatccaacttaagggagtccggacatggaacaacattgcctcggcaacctgagttttccttgtcaactgaccaccgccaccagcctgtcaagaagctccccgcagagaggggaggagctcgccaaacagggttagcctggtcgacaacaaggaagacgaccccgccgccacgccctagcacgctgacccaggccacctccgccacgccgcccttcagcctccacgtcgaatccgacctatgggaccggaccgggaacaacctcgccttggcaacctgagtctttctggtagaccggccaacgccttcaccgtgcctagaagctccccacaaagaaggggaggagctcttcgaacacagcgaccgcctggccaaccacgggaaagacgaccccgccgccagcgcgctccacaccgccgccaagcccaacggcggcctcgccgaagccaatgctccgccgccacctcgccgcccaccaacggcgacccaggccgcccagcgtcgctggtcgcgcctccaacccgccacctccgcatggccaacgcgccgttgccgccgcctacgcgcggccctcgcgccgtcccgcgcatcccaggagacgtcgccgcgtcttgggttgccgggccgagcggccgtcgcgaagccgccgcaccgctgctgccgcgctgggcaggctgcgcctgcccgccgcctccgcgcccgggctagccgcaccacgctgccccaggcgcccgccgcctccgcgctcgggccgtccctgcagagccaccgccggtgagccgcagctgccctccgcctccgcgctcgagccaggccgaccgagctgtagccgcacgccgccgcgccgcctcaagccgcgtcgcgccgccggcgcgccagatctaggcgaggggtggccggattcggccttgggggcgccggatccgccgcctccccacgcctcgccgccgtggccgcctcgcccgagccgcgccaccgcctctgaccgcgctggtgagggatggtgccccgtccacgtcgcgccgaggaggggaacaccacgaaggagagaagcctcgccgccgccttccttacacgccgccggcgagctccggcagcggcgaggtgagggggaaggagtggaggcgtgggcggctagggtttttggccccccgagccgcccgcgcgagagcgacgcggggagtttttctgaagttctccttcaaagatgtttcgtgttggccacttgggagttgggaactaggaagcaaatcctctgccat
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| CDS seq | atggcagaggatttgcttcctagttcccaactcccaagtggccaacacgaaacatctttgaaggagaacttcagaaaaactccccgcgtcgctctcgcgcgggcggctcggggggccaaaaaccctagccgcccacgcctccactccttccccctcacctcgccgctgccggagctcgccggcggcgtggacggcccgagcgcggaggcggcgggcgcctggggcagcgtggtgcggctagcccgggcgcggaggcggcgggcaggcgcagcctgcccagcgcggcagcagcggtgcggcggcttcgcgacggccgctcggcccggcaacccaagacgcggcgacgtctcctgggatgcgcgggacggcgcgagggccgcgcgtaggcggcggcaacggcgcgttggccatgcggaggtggcgggttggaggcgcgaccagcgacgctgggcggcctgggtcgccgttggtgggcggcgaggtggcggcggagcattggcttcggcgaggccgccgttgggcttggcggcggtgtggagcgcgctggcggcggggtcgtctttcccgtggttggccaggcggtcgctgtgttcgaagagctcctccccttctttgtggggagcttctaggcacggtgaaggcgttggccggtctaccagaaagactcaggttgccaaggcgaggttgttcccggtccggtcccataggtcggattcgacgtggaggctgaagggcggcgtggcggaggtggcctgggtcagcgtgctagggcgtggcggcggggtcgtcttccttgttgtcgaccaggctaaccctgtttggcgagctcctcccctctctgcggggagcttcttgacaggctggtggcggtggtcagttgacaaggaaaactcaggttgccgaggcaatgttgttccatgtccggactcccttaagttggattcaacggggaagccggcgggcggcgtggcagaggcggcttgggtcagctacctggcggaggtggttggtgctgtggcagtcttgtcgttggcaagactggaagccggccggcggtggggcgtcggttgggtgtggtggaagccatgtgccgccgatgtttag
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| Protein seq | MAEDLLPSSQLPSGQHETSLKENFRKTPRVALARAARGAKNPSRPRLHSFPLTSPLPELAGGVDGPSAEAAGAWGSVVRLARARRRRAGAACPARQQRCGGFATAARPGNPRRGDVSWDARDGARAARRRRQRRVGHAEVAGWRRDQRRWAAWVAVGGRRGGGGALASARPPLGLAAVWSALAAGSSFPWLARRSLCSKSSSPSLWGASRHGEGVGRSTRKTQVAKARLFPVRSHRSDSTWRLKGGVAEVAWVSVLGRGGGVVFLVVDQANPVWRAPPLSAGSFLTGWWRWSVDKENSGCRGNVVPCPDSLKLDSTGKPAGGVAEAAWVSYLAEVVGAVAVLSLARLEAGRRWGVGWVWWKPCAADV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0028620 | OsCMeo_01g0028620.01 | Chr01 | 28532984 | 28534404 | - | NAM | ||
| CDS seq | atggcagaggatttgcttcctagttcccaactcccaagtggccaacacgaaacatctttgaaggagaacttcagaaaaactccccgcgtcgctctcgcgcgggcggctcggggggccaaaaaccctagccgcccacgcctccactccttccccctcacctcgccgctgccggagctcgccggcggcgtggacggcccgagcgcggaggcggcgggcgcctggggcagcgtggtgcggctagcccgggcgcggaggcggcgggcaggcgcagcctgcccagcgcggcagcagcggtgcggcggcttcgcgacggccgctcggcccggcaacccaagacgcggcgacgtctcctgggatgcgcgggacggcgcgagggccgcgcgtaggcggcggcaacggcgcgttggccatgcggaggtggcgggttggaggcgcgaccagcgacgctgggcggcctgggtcgccgttggtgggcggcgaggtggcggcggagcattggcttcggcgaggccgccgttgggcttggcggcggtgtggagcgcgctggcggcggggtcgtctttcccgtggttggccaggcggtcgctgtgttcgaagagctcctccccttctttgtggggagcttctaggcacggtgaaggcgttggccggtctaccagaaagactcaggttgccaaggcgaggttgttcccggtccggtcccataggtcggattcgacgtggaggctgaagggcggcgtggcggaggtggcctgggtcagcgtgctagggcgtggcggcggggtcgtcttccttgttgtcgaccaggctaaccctgtttggcgagctcctcccctctctgcggggagcttcttgacaggctggtggcggtggtcagttgacaaggaaaactcaggttgccgaggcaatgttgttccatgtccggactcccttaagttggattcaacggggaagccggcgggcggcgtggcagaggcggcttgggtcagctacctggcggaggtggttggtgctgtggcagtcttgtcgttggcaagactggaagccggccggcggtggggcgtcggttgggtgtggtggaagccatgtgccgccgatgtttag
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| Protein seq | MAEDLLPSSQLPSGQHETSLKENFRKTPRVALARAARGAKNPSRPRLHSFPLTSPLPELAGGVDGPSAEAAGAWGSVVRLARARRRRAGAACPARQQRCGGFATAARPGNPRRGDVSWDARDGARAARRRRQRRVGHAEVAGWRRDQRRWAAWVAVGGRRGGGGALASARPPLGLAAVWSALAAGSSFPWLARRSLCSKSSSPSLWGASRHGEGVGRSTRKTQVAKARLFPVRSHRSDSTWRLKGGVAEVAWVSVLGRGGGVVFLVVDQANPVWRAPPLSAGSFLTGWWRWSVDKENSGCRGNVVPCPDSLKLDSTGKPAGGVAEAAWVSYLAEVVGAVAVLSLARLEAGRRWGVGWVWWKPCAADV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g48120 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028640 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028180 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027800 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027560 | RBH | 4.183520 | 36.968025 | 20.994690 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0458800 | RBH | 1.5077015 | 7.7175435 | 5.2054265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0027280 | RBH | 0.206053 | 0.831542 | 0.552782 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0447400 | RBH | 2.937827 | 6.765454 | 14.08442 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027570 | RBH | 0.294035 | 0.535511 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027430 | RBH | 0.548299 | 9.892630 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027750 | RBH | 2.193419 | 28.282810 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0027880 | RBH | 0.523901 | 0.638056 | 2.158501 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027630 | RBH | 0.150163 | 6.345959 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028080 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027780 | RBH | 0.0 | 0.0 | 0.0 |
