Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0026730 | OGI:01079310 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:26845391-26847160 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagcatctagacttgttgcatgttaagaatgcatgatgtttagacgcaacaggcaagtgatcatgcaataacctgtagtactgttcgtagaggtcgtagcggtcgctgtcccacccggacgtccggacactagccatgagcacgaacgccgccaggctcagcaccgccgccgccacccgcagcgccgccgacagcgtcctcctgtcccccgccgccatgtctcgcggcacgtccgggacgacgtcggcctcggcgggcggcgccggcggctcttgatcgaccacctgatccggctccgggacgtgcttcgtggcgggcggcggcgcctcgtcggggttcttctcgaactgctcggcctgcttgaggtaggtgtccatgtgcggcgtggtgtagagccggacgccgtcggcttggcccctggtggcgacgcgctggcggtcgtgggaggcgagcgaggaggcggcgtaggggcggccctccttgttgtagaggtactgcctctccatgagcccccgcagctgccgcagctcctccaggagcatggccaccgtcgggttcgccgcctggttgaaattctcctccagtgccttccgcgcctcctccagcttgttccgcgcgtcctccatcttgttggcctcggccatgtccctggctgccctgatcatgtcggcgtgctgccgccgggccagctcgttctccaccggctgtggcttcctcgccgcgcctggtgcagcactcggtctgcgttttatggtgatgagatcggggttggaggtcacctgctgggcctggaaggtgaatctgtactgtgccaagcagacattggcgtcgtacggaggggaggcggtcttgtcagcaagcgcgaggtagacgatgaccctgcgcgcctctgcgctgtaaagggtgccgaagctgactgtgacggaggagccgtcgctggcggtggtctgcgggtaggtccccgcgtccacccagaccaccctcttgatggtgacctcgccatggaaccgcgtgacggtgagctcgaggtcctgggcgatgatggtgaggaggccgccaaggagctgggagaagggccccgtgaggttggcgctgtcggcgacgtagttgaacgtcccgccaaggctcttgcgcgcgatcgcttccagcaggttggagtcgtggctcgcgccgaagctgaaggtgtagacggggacgttcttgagatggacgtccctggcgtcgccgccgtggttctggtagccgtcggacatgagcatgacgctgacggcgcggccggcggccagactgcggccgtcgacaacgctcatgccggtctcgaggccgcccttcatgttggtgtcgccgtaggccttgaggccgtcgacgagggccttgagctcggcctgcgcggccgccgtgacgaagcgcagcgggcagaggcgggtggcgttggtgcagaaggtgacgatgcagaggcggtcgaggtcgctgagcttgcggatgacgaactgcagggcggtcttcaccttgtcgatcctgtccccgtccatgctgccgctgacgtcgatgacggcgacgaggtccaggcccgccctgtcggtggacgaggaggagcccctgagctcgagcagcagctcctggtcatggggtgccatggacgcgacgtcgttgtggtacttgttgagacgcacttgcttcaccagttggcccgtgatccccaccgtcggcctcgccggctcggtggcggtgctcgtcggagcagtctgctcgtcgtcgttgtacgccat
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| CDS seq | atggcgtacaacgacgacgagcagactgctccgacgagcaccgccaccgagccggcgaggccgacggtggggatcacgggccaactggtgaagcaagtgcgtctcaacaagtaccacaacgacgtcgcgtccatggcaccccatgaccaggagctgctgctcgagctcaggggctcctcctcgtccaccgacagggcgggcctggacctcgtcgccgtcatcgacgtcagcggcagcatggacggggacaggatcgacaaggtgaagaccgccctgcagttcgtcatccgcaagctcagcgacctcgaccgcctctgcatcgtcaccttctgcaccaacgccacccgcctctgcccgctgcgcttcgtcacggcggccgcgcaggccgagctcaaggccctcgtcgacggcctcaaggcctacggcgacaccaacatgaagggcggcctcgagaccggcatgagcgttgtcgacggccgcagtctggccgccggccgcgccgtcagcgtcatgctcatgtccgacggctaccagaaccacggcggcgacgccagggacgtccatctcaagaacgtccccgtctacaccttcagcttcggcgcgagccacgactccaacctgctggaagcgatcgcgcgcaagagccttggcgggacgttcaactacgtcgccgacagcgccaacctcacggggcccttctcccagctccttggcggcctcctcaccatcatcgcccaggacctcgagctcaccgtcacgcggttccatggcgaggtcaccatcaagagggtggtctgggtggacgcggggacctacccgcagaccaccgccagcgacggctcctccgtcacagtcagcttcggcaccctttacagcgcagaggcgcgcagggtcatcgtctacctcgcgcttgctgacaagaccgcctcccctccgtacgacgccaatgtctgcttggcacagtacagattcaccttccaggcccagcaggtgacctccaaccccgatctcatcaccataaaacgcagaccgagtgctgcaccaggcgcggcgaggaagccacagccggtggagaacgagctggcccggcggcagcacgccgacatgatcagggcagccagggacatggccgaggccaacaagatggaggacgcgcggaacaagctggaggaggcgcggaaggcactggaggagaatttcaaccaggcggcgaacccgacggtggccatgctcctggaggagctgcggcagctgcgggggctcatggagaggcagtacctctacaacaaggagggccgcccctacgccgcctcctcgctcgcctcccacgaccgccagcgcgtcgccaccaggggccaagccgacggcgtccggctctacaccacgccgcacatggacacctacctcaagcaggccgagcagttcgagaagaaccccgacgaggcgccgccgcccgccacgaagcacgtcccggagccggatcaggtggtcgatcaagagccgccggcgccgcccgccgaggccgacgtcgtcccggacgtgccgcgagacatggcggcgggggacaggaggacgctgtcggcggcgctgcgggtggcggcggcggtgctgagcctggcggcgttcgtgctcatggctagtgtccggacgtccgggtgggacagcgaccgctacgacctctacgaacagtactacaggttattgcatgatcacttgcctgttgcgtctaaacatcatgcattcttaacatgcaacaagtctagatgctag
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| Protein seq | MAYNDDEQTAPTSTATEPARPTVGITGQLVKQVRLNKYHNDVASMAPHDQELLLELRGSSSSTDRAGLDLVAVIDVSGSMDGDRIDKVKTALQFVIRKLSDLDRLCIVTFCTNATRLCPLRFVTAAAQAELKALVDGLKAYGDTNMKGGLETGMSVVDGRSLAAGRAVSVMLMSDGYQNHGGDARDVHLKNVPVYTFSFGASHDSNLLEAIARKSLGGTFNYVADSANLTGPFSQLLGGLLTIIAQDLELTVTRFHGEVTIKRVVWVDAGTYPQTTASDGSSVTVSFGTLYSAEARRVIVYLALADKTASPPYDANVCLAQYRFTFQAQQVTSNPDLITIKRRPSAAPGAARKPQPVENELARRQHADMIRAARDMAEANKMEDARNKLEEARKALEENFNQAANPTVAMLLEELRQLRGLMERQYLYNKEGRPYAASSLASHDRQRVATRGQADGVRLYTTPHMDTYLKQAEQFEKNPDEAPPPATKHVPEPDQVVDQEPPAPPAEADVVPDVPRDMAAGDRRTLSAALRVAAAVLSLAAFVLMASVRTSGWDSDRYDLYEQYYRLLHDHLPVASKHHAFLTCNKSRC |
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| Function | Uncharacterized protein sll0103 [UniProtKB/Swiss-Prot:Q55874] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0026730 | OsCMeo_01g0026730.01 | Chr01 | 26845391 | 26847160 | - | NAM | ||
| CDS seq | atggcgtacaacgacgacgagcagactgctccgacgagcaccgccaccgagccggcgaggccgacggtggggatcacgggccaactggtgaagcaagtgcgtctcaacaagtaccacaacgacgtcgcgtccatggcaccccatgaccaggagctgctgctcgagctcaggggctcctcctcgtccaccgacagggcgggcctggacctcgtcgccgtcatcgacgtcagcggcagcatggacggggacaggatcgacaaggtgaagaccgccctgcagttcgtcatccgcaagctcagcgacctcgaccgcctctgcatcgtcaccttctgcaccaacgccacccgcctctgcccgctgcgcttcgtcacggcggccgcgcaggccgagctcaaggccctcgtcgacggcctcaaggcctacggcgacaccaacatgaagggcggcctcgagaccggcatgagcgttgtcgacggccgcagtctggccgccggccgcgccgtcagcgtcatgctcatgtccgacggctaccagaaccacggcggcgacgccagggacgtccatctcaagaacgtccccgtctacaccttcagcttcggcgcgagccacgactccaacctgctggaagcgatcgcgcgcaagagccttggcgggacgttcaactacgtcgccgacagcgccaacctcacggggcccttctcccagctccttggcggcctcctcaccatcatcgcccaggacctcgagctcaccgtcacgcggttccatggcgaggtcaccatcaagagggtggtctgggtggacgcggggacctacccgcagaccaccgccagcgacggctcctccgtcacagtcagcttcggcaccctttacagcgcagaggcgcgcagggtcatcgtctacctcgcgcttgctgacaagaccgcctcccctccgtacgacgccaatgtctgcttggcacagtacagattcaccttccaggcccagcaggtgacctccaaccccgatctcatcaccataaaacgcagaccgagtgctgcaccaggcgcggcgaggaagccacagccggtggagaacgagctggcccggcggcagcacgccgacatgatcagggcagccagggacatggccgaggccaacaagatggaggacgcgcggaacaagctggaggaggcgcggaaggcactggaggagaatttcaaccaggcggcgaacccgacggtggccatgctcctggaggagctgcggcagctgcgggggctcatggagaggcagtacctctacaacaaggagggccgcccctacgccgcctcctcgctcgcctcccacgaccgccagcgcgtcgccaccaggggccaagccgacggcgtccggctctacaccacgccgcacatggacacctacctcaagcaggccgagcagttcgagaagaaccccgacgaggcgccgccgcccgccacgaagcacgtcccggagccggatcaggtggtcgatcaagagccgccggcgccgcccgccgaggccgacgtcgtcccggacgtgccgcgagacatggcggcgggggacaggaggacgctgtcggcggcgctgcgggtggcggcggcggtgctgagcctggcggcgttcgtgctcatggctagtgtccggacgtccgggtgggacagcgaccgctacgacctctacgaacagtactacaggttattgcatgatcacttgcctgttgcgtctaaacatcatgcattcttaacatgcaacaagtctagatgctag
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| Protein seq | MAYNDDEQTAPTSTATEPARPTVGITGQLVKQVRLNKYHNDVASMAPHDQELLLELRGSSSSTDRAGLDLVAVIDVSGSMDGDRIDKVKTALQFVIRKLSDLDRLCIVTFCTNATRLCPLRFVTAAAQAELKALVDGLKAYGDTNMKGGLETGMSVVDGRSLAAGRAVSVMLMSDGYQNHGGDARDVHLKNVPVYTFSFGASHDSNLLEAIARKSLGGTFNYVADSANLTGPFSQLLGGLLTIIAQDLELTVTRFHGEVTIKRVVWVDAGTYPQTTASDGSSVTVSFGTLYSAEARRVIVYLALADKTASPPYDANVCLAQYRFTFQAQQVTSNPDLITIKRRPSAAPGAARKPQPVENELARRQHADMIRAARDMAEANKMEDARNKLEEARKALEENFNQAANPTVAMLLEELRQLRGLMERQYLYNKEGRPYAASSLASHDRQRVATRGQADGVRLYTTPHMDTYLKQAEQFEKNPDEAPPPATKHVPEPDQVVDQEPPAPPAEADVVPDVPRDMAAGDRRTLSAALRVAAAVLSLAAFVLMASVRTSGWDSDRYDLYEQYYRLLHDHLPVASKHHAFLTCNKSRC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0640200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g45320 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0640200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026840 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026330 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0025990 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025790 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0432700 | RBH | 0.0185105 | 0.020681 | 0.00351 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0025420 | RBH | 0.027332 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0422100 | RBH | 0.047309 | 0.0752625 | 0.044055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025710 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0025630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025950 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025990 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0025820 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026150 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025930 | RBH | 0.000000 | 0.0 | 0.000000 |
