Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0023470 | OGI:01071470 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:24076007-24078963 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ataaagcacaaattgtgtacaatccatcaatgtttggattagaggctagagcacaatgatggatggacatcccatccaggtttcaaagattaagcctccttgtgaacagtgcctccaacaatctcggccctggatgcaatttgcaaatctgaatgcaagtactggtctagtttattacccagataagcatcttaacacaagcactacattgtatcaagctttttatactgatttacttcctctccttcacccaaagaagctattataggctggtacacattattttggagaaaacaacaccctgacatgaaattgcttcaggactgaatcatcgggagaattaacagctccaagctcaccattgttaaaagtccagcaaaacagggatccctcaaactccaagtgaacaaccagttttcccttggacttcattgccacaatgtgctggaaagacttgtccttgcagaatttcccattgaacagcaaaatctcacggtcaaagccactacaaaatgcagtgaatctcacatgacgaggatcgttactgtcaatctctgtggatacttgtatgacagcttcaatactctgtgaaagatacatatagtgtatgtccagatagcaatggtcgcttaatatccgcccccttatctccttattaaacacgccacgggcaaaaatctcgacatacgcggatagtaattgcttgtcattagatactccaccttccattttcacccaaagatcaacctcaaacaatgcatattctactacatacattcctcgacaagggctgcaaagaggtaatgtgaaggaatcctacaatttaaaaggacttgttagaatccaaagctagagcttaagcaattttaagtgtgttaattagaacatacaaatacatattttaaaagtattctaatagaataaactcaactggacatgcatactaataaataaatagaatggcatgcaaattttgcacaaactcgatggtatatacacagttaaatatttttgcggacaccatcagcgtgttagtacaatcagaaaatgaaatacaaaaatgcacatcatatataatgagatatcgtaacaatgagatattgagcactactgatatagacctcttagtgttagaggtatatatatacctcttaattaacacactagaaaatctttacaccaaaatacttccaaaagacttaacaatagacccattgtaaccaaaatataagggatgacaggagaatgtactacagttgcagcgaacagtgatgcacttatatcaaaatggagcactgaaagaaacaaaaatatattttgaaacagtgctaacgataaaccatacaaaagatgcctttaagaaccataaaaccaattgtcaacaatatgtatctgctaacacactacattcagcctatccaagaaaaaaaaatcttattagcattcatatatataatatatataggcatattagggtatctttttcagccaagatatataacttaacttccaaaaatagactgtatttacctgttcaactatgacaggatcatctctggtacggttgaagacataattcctcaaagggtccaagtaatcacgtactgcaaagattccgtaaacactaataggataggacatggagctggacaacctcaaagagaagatctggagcatctccttgggttcaagccacccaatagtagatgcagctacaaacatttaaaagaaaagaaaagtcgttactttacaaatacattttggtaatttggtagcacacaatattaataactattgaatcctttataataggaatcgacaagcacttactctcagaagtatcattggtcttgtattcacggtgatagcacaaactcttgggggtacagaaatctgttgtctccgggagcggtttcaaaggaaatactggacaagaagcactcgtctcatcccctccctgcttttggaactcctcgcacgccaccatgaattctctattcctctcgtcgtatgtttctagccacttgcgaattatttcctttgcctgctccttcgtgaagttctgccctgagaaattaaaatagcgatagtatctgttcgtcttttaatctggaatcgaagctctctactggattattagtagtgttacctgggcaagttgtctcctcgtctgcgtaaccatcatcatcactatcctcgtcgatgtcacctatcaacatattgtgtgagttggctgaggcaaagacgtcatctgaatctgaatttttcagataatagaaatggtttacatctctggcctctaccgagaggcacacaaccaatgtggtgttttagaattgaaaaacaaaaaagtgtgatgggacaaaagtctgaatttgcagtctgaattagtgccttgggtgacgaatgacgatcgatatcgtataaggaaatgcatacatgaaagcaagaggaggattgaggatgcacctttgcccatgggtggtgccgggtggtcggcgtcctcgtcgcgcggatcgtggcagcctaggtccgtcgttggggattcagacaaggggggatcgtccgtgcaagggatgggctgggaatcccgagagccacaactaggaggatccttcttctccggcgacgaagccatcaccacggttgggctggtggcgctgctgctctcagcaaccctgtccctgtgcgatatggagacgatgatgggcttctttggcacacagctcgcaactcatcttgaaagaaaaatgggaggcgcaaccacagatccgtcatccaaatccatggatttaccttctcgatgcggcgggatgcaggggacgccgatgcggcaacttcgttccactggcccggagaagtcgcggcgccggtcagggaactgctggcggagggcggcggcctggaaccctaaatcacctccacctcgctggggagtactaggcatgtaggcaatg
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| CDS seq | atggcttcgtcgccggagaagaaggatcctcctagttgtggctctcgggattcccagcccatcccttgcacggacgatccccccttgtctgaatccccaacgacggacctaggctgccacgatccgcgcgacgaggacgccgaccacccggcaccacccatgggcaaaggtgacatcgacgaggatagtgatgatgatggttacgcagacgaggagacaacttgcccagggcagaacttcacgaaggagcaggcaaaggaaataattcgcaagtggctagaaacatacgacgagaggaatagagaattcatggtggcgtgcgaggagttccaaaagcagggaggggatgagacgagtgcttcttgtccagtatttcctttgaaaccgctcccggagacaacagatttctgtacccccaagagtttgtgctatcaccgtgaatacaagaccaatgatacttctgagactgcatctactattgggtggcttgaacccaaggagatgctccagatcttctctttgaggttgtccagctccatgtcctatcctattagtgtttacggaatctttgcagtacgtgattacttggaccctttgaggaattatgtcttcaaccgtaccagagatgatcctgtcatagttgaacaggattccttcacattacctctttgcagcccttgtcgaggaatgtatgtagtagaatatgcattgtttgaggttgatctttgggtgaaaatggaaggtggagtatctaatgacaagcaattactatccgcgtatgtcgagatttttgcccgtggcgtgtttaataaggagataagggggcggatattaagcgaccattgctatctggacatacactatatgtatctttcacagagtattgaagctgtcatacaagtatccacagagattgacagtaacgatcctcgtcatgtgagattcactgcattttgtagtggctttgaccgtgagattttgctgttcaatgggaaattctgcaaggacaagtctttccagcacattgtggcaatgaagtccaagggaaaactggttgttcacttggagtttgagggatccctgttttgctggacttttaacaatggtgagcttggagctgttaattctcccgatgattcagtcctgaagcaatttcatgtcagggtgttgttttctccaaaataa
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| Protein seq | MASSPEKKDPPSCGSRDSQPIPCTDDPPLSESPTTDLGCHDPRDEDADHPAPPMGKGDIDEDSDDDGYADEETTCPGQNFTKEQAKEIIRKWLETYDERNREFMVACEEFQKQGGDETSASCPVFPLKPLPETTDFCTPKSLCYHREYKTNDTSETASTIGWLEPKEMLQIFSLRLSSSMSYPISVYGIFAVRDYLDPLRNYVFNRTRDDPVIVEQDSFTLPLCSPCRGMYVVEYALFEVDLWVKMEGGVSNDKQLLSAYVEIFARGVFNKEIRGRILSDHCYLDIHYMYLSQSIEAVIQVSTEIDSNDPRHVRFTAFCSGFDREILLFNGKFCKDKSFQHIVAMKSKGKLVVHLEFEGSLFCWTFNNGELGAVNSPDDSVLKQFHVRVLFSPK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0023470 | OsCMeo_01g0023470.04 | Chr01 | 24076007 | 24078923 | - | NAM | ||
| CDS seq | atggcttcgtcgccggagaagaaggatcctcctagttgtggctctcgggattcccagcccatcccttgcacggacgatccccccttgtctgaatccccaacgacggacctaggctgccacgatccgcgcgacgaggacgccgaccacccggcaccacccatgggcaaaggtgacatcgacgaggatagtgatgatgatggttacgcagacgaggagacaacttgcccagggcagaacttcacgaaggagcaggcaaaggaaataattcgcaagtggctagaaacatacgacgagaggaatagagaattcatggtggcgtgcgaggagttccaaaagcagggaggggatgagacgagtgcttcttgtccagtatttcctttgaaaccgctcccggagacaacagatttctgtacccccaagagtttgtgctatcaccgtgaatacaagaccaatgatacttctgagactgcatctactattgggtggcttgaacccaaggagatgctccagatcttctctttgaggttgtccagctccatgtcctatcctattagtgtttacggaatctttgcagtacgtgattacttggaccctttgaggaattatgtcttcaaccgtaccagagatgatcctgtcatagttgaacaggattccttcacattacctctttgcagcccttgtcgaggaatgtatgtagtagaatatgcattgtttgaggttgatctttgggtgaaaatggaaggtggagtatctaatgacaagcaattactatccgcgtatgtcgagatttttgcccgtggcgtgtttaataaggagataagggggcggatattaagcgaccattgctatctggacatacactatatgtatctttcacagagtattgaagctgtcatacaagtatccacagagattgacagtaacgatcctcgtcatgtgagattcactgcattttgtagtggctttgaccgtgagattttgctgttcaatgggaaattctgcaaggacaagtctttccagcacattgtggcaatgaagtccaagggaaaactggttgttcacttggagtttgagggatccctgttttgctggacttttaacaatggtgagcttggagctgttaattctcccgatgattcagtcctgaagcaatttcatgtcagggtgttgttttctccaaaataa
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| Protein seq | MASSPEKKDPPSCGSRDSQPIPCTDDPPLSESPTTDLGCHDPRDEDADHPAPPMGKGDIDEDSDDDGYADEETTCPGQNFTKEQAKEIIRKWLETYDERNREFMVACEEFQKQGGDETSASCPVFPLKPLPETTDFCTPKSLCYHREYKTNDTSETASTIGWLEPKEMLQIFSLRLSSSMSYPISVYGIFAVRDYLDPLRNYVFNRTRDDPVIVEQDSFTLPLCSPCRGMYVVEYALFEVDLWVKMEGGVSNDKQLLSAYVEIFARGVFNKEIRGRILSDHCYLDIHYMYLSQSIEAVIQVSTEIDSNDPRHVRFTAFCSGFDREILLFNGKFCKDKSFQHIVAMKSKGKLVVHLEFEGSLFCWTFNNGELGAVNSPDDSVLKQFHVRVLFSPK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0023470 | OsCMeo_01g0023470.03 | Chr01 | 24077256 | 24078953 | - | NAM | ||
| CDS seq | atgcctagtactccccagcgaggtggaggtgatttagggttccaggccgccgccctccgccagcagttccctgaccggcgccgcgacttctccgggccagtggaacgaagttgccgcatcggcgtcccctgcatcccgccgcatcgagaagggacagggttgctgagagcagcagcgccaccagcccaaccgtggtga |
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| Protein seq | MPSTPQRGGGDLGFQAAALRQQFPDRRRDFSGPVERSCRIGVPCIPPHREGTGLLRAAAPPAQPW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0023470 | OsCMeo_01g0023470.02 | Chr01 | 24076007 | 24078953 | - | NAM | ||
| CDS seq | atgcctagtactccccagcgaggtggaggtgatttagggttccaggccgccgccctccgccagcagttccctgaccggcgccgcgacttctccgggccagtggaacgaagttgccgcatcggcgtcccctgcatcccgccgcatcgagaagggacagggttgctgagagcagcagcgccaccagcccaaccgtggtga |
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| Protein seq | MPSTPQRGGGDLGFQAAALRQQFPDRRRDFSGPVERSCRIGVPCIPPHREGTGLLRAAAPPAQPW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0023470 | OsCMeo_01g0023470.01 | Chr01 | 24076007 | 24078963 | - | NAM | ||
| CDS seq | atggcttcgtcgccggagaagaaggatcctcctagttgtggctctcgggattcccagcccatcccttgcacggacgatccccccttgtctgaatccccaacgacggacctaggctgccacgatccgcgcgacgaggacgccgaccacccggcaccacccatgggcaaaggtgacatcgacgaggatagtgatgatgatggttacgcagacgaggagacaacttgcccagggcagaacttcacgaaggagcaggcaaaggaaataattcgcaagtggctagaaacatacgacgagaggaatagagaattcatggtggcgtgcgaggagttccaaaagcagggaggggatgagacgagtgcttcttgtccagtatttcctttgaaaccgctcccggagacaacagatttctgtacccccaagagtttgtgctatcaccgtgaatacaagaccaatgatacttctgagactgcatctactattgggtggcttgaacccaaggagatgctccagatcttctctttgaggttgtccagctccatgtcctatcctattagtgtttacggaatctttgcagtacgtgattacttggaccctttgaggaattatgtcttcaaccgtaccagagatgatcctgtcatagttgaacaggattccttcacattacctctttgcagcccttgtcgaggaatgtatgtagtagaatatgcattgtttgaggttgatctttgggtgaaaatggaaggtggagtatctaatgacaagcaattactatccgcgtatgtcgagatttttgcccgtggcgtgtttaataaggagataagggggcggatattaagcgaccattgctatctggacatacactatatgtatctttcacagagtattgaagctgtcatacaagtatccacagagattgacagtaacgatcctcgtcatgtgagattcactgcattttgtagtggctttgaccgtgagattttgctgttcaatgggaaattctgcaaggacaagtctttccagcacattgtggcaatgaagtccaagggaaaactggttgttcacttggagtttgagggatccctgttttgctggacttttaacaatggtgagcttggagctgttaattctcccgatgattcagtcctgaagcaatttcatgtcagggtgttgttttctccaaaataa
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| Protein seq | MASSPEKKDPPSCGSRDSQPIPCTDDPPLSESPTTDLGCHDPRDEDADHPAPPMGKGDIDEDSDDDGYADEETTCPGQNFTKEQAKEIIRKWLETYDERNREFMVACEEFQKQGGDETSASCPVFPLKPLPETTDFCTPKSLCYHREYKTNDTSETASTIGWLEPKEMLQIFSLRLSSSMSYPISVYGIFAVRDYLDPLRNYVFNRTRDDPVIVEQDSFTLPLCSPCRGMYVVEYALFEVDLWVKMEGGVSNDKQLLSAYVEIFARGVFNKEIRGRILSDHCYLDIHYMYLSQSIEAVIQVSTEIDSNDPRHVRFTAFCSGFDREILLFNGKFCKDKSFQHIVAMKSKGKLVVHLEFEGSLFCWTFNNGELGAVNSPDDSVLKQFHVRVLFSPK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.282639 | 15.826881 | 11.948547 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0590200 | RBH | 1.610032 | 2.105338 | 8.745752 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g40750 | RBH | 1.010887 | 1.314702 | 2.090248 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0590200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0023580 | RBH | 0.681793 | 14.142039 | 7.653760 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023140 | RBH | 0.530680 | 3.217928 | 3.678620 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0023460 | RBH | 0.000000 | 0.0 | 1.734549 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022870 | RBH | 0.529642 | 0.399659 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022560 | RBH | 3.847374 | 33.695621 | 22.883358 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0384300 | SBH | 1.874596 | 7.379419 | 5.2058335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0022500 | RBH | 0.715179 | 1.203899 | 1.901564 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0373300 | RBH | 10.800572 | 12.050878 | 37.5113525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0022490 | RBH | 0.199551 | 0.040858 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0022440 | RBH | 0.271085 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022720 | SBH | 2.884171 | 9.414877 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022740 | RBH | 0.786384 | 2.169105 | 2.008995 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0022550 | RBH | 0.233965 | 2.101248 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022880 | RBH | 0.825846 | 5.519073 | 3.463547 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0022550 | RBH | 0.702863 | 7.951483 | 12.804585 |
