Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0022580 | OGI:01069570 | 4/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:23345043-23350425 | ||||||||
| Gene Symbol | PSH1, Rb, Rb*, bhlh165, OsbHLH165, Rb2, OsPSH1, OsRb2 | ||||||||||
| DNA seq | atggcatctgctccttcagctcaggaagaacccctacagccagggacgatgcaattcaggaagcagcttgctgctgccgtgaggagcatcagttggacctatgccatcttttggtccatttcaactactcgtccagggtaattaactggtcacagactctataatggtaactatatattccatactgcttatgccatgttattatacgtatatatacgtttgtaagttcatctatcagatttgtatcaattaattactcatatcatcatccaataaaggctcatttggagcgcagattggaaaacaatatgagtattgaaaaacatagaaaaatatgagatcgtctgttctagcacaggaattaggtaaaacatatgaatatatcttacaaaacaacctaaagaataagggctgagatcgatccatatttcgaacagagggattttggagaaaaattgaaggatatactatattaattcctagggaaagaattcctctatggtccttcatgacgaaggaaatggctcgccaaattataggaatttaggaatttcttttttcattttaaaaaaaaatctttgtatctatctctttcttctaattaccgtgtttttcctttgctccattcaaacggacattcttatgtttttaatttgtttttccatccataggatttaatgtgcccagggcacttgaatactactatgttttttcctatcaatatattttgaaaatcctatattcctaatttggcgattaattattgatttgccttggacttagcaaaggaataatttcctctatttttgctatgcctcaatcattgaatccaagagaatgaatagtgccaaaccctatagtaattgaactcctccttgtttcttacaaaattcatgcaaacaaaaggaacactatgtgagataTtttttttctttatattgattggagctttcttaattagaagacctcgtatcaaatccttggtggataaaataaattaattcctgcattaataagaaacatagaaatttctatattaaccgagaaaaccatagccatccaatttagcccctcatcatttgcttattagcatatcagtcccatgcatgtctcacagccaataatatatatacggtcacgctacatgacgcgacacaggcgttgcgtgccaggaaataaagtggcgcgtcacctagccatccccttctcgatatttccgttttctggctccttctcccccacaccttcaaaaggtaaaagaaattactctccggtgtagcggtactccaaacatctcctgcctccattcctacgaggagcgataccttgtccccacgtgcctccctcatcccgtatcctctcatcttagtaaaaattttactagaaattccagagcaacaaacctctttctatatcagtgaaataatttttacttctcacaatttaggggctcgaaaatacttgtcatgttcagtaatattttcactctagtatatttgtttttcattccctcatggtgtgctcatagtaatatttttatcacatgtatattcgtagtaagtaatatatttactcagtctatcaatatgggaaaagatgagtaaaatttttgctgatgttgcaaattatccgccatagtaatttatttactaacatttttattctgattagtaacacatttatttcaatggtgtcggttaaaaatggaaagtagaaaattatcaaccatcacaattactcagcagatcatctgactctgtgagtataaaaactacaaggagtagactttacagtggatcataagatccaccagtaaaaagttacacagttaatctataagtggaaaaattactcaacaggagaaactactacttttcagcatgactccagtacgtggctggctgcacatggattgagtaaaatttttactacgcatcttccagtggctctcattcaattaggtggcgctttgtgtttacgttggcgagttaaaaaattagtgatcatcttgatgtggtgggggagccaaaggacgaggggagggcttacgctgggtgttgtgagacgtgccatttagctatatgacacgtagggtgtcatatatagtagttctttctctgtgtgattgtttgtataaatcgatctatatagacctacaaaatttttggctgtcacatcagacgtttgaccggatgttagaaggagttttcggacacgaatgaaaaaaactaatttcattactcgcctggaaaccgtaagacgaatcttttaagcctaattaatttgtcattagcacatgtgagttactgtagcacttatagataatcatggactaattaggctcaaaagattcatctcacgatttccccgtccctaactgtacaattagtttttaattttatctatataatgctccatacatgtgtttaaagatttgatgtgatgttttttgaaaaaaaaaattgagaactaaaccgggtcatactattccacatgtagagtcctgacatggaatgacgggttctacaacggcgagataaagacaaggaagatagagaacaacctagtgacggagctcacagctgagcagctcctcctacagagaagcgagcaactgagggagctgtacaactctctcctctctggtgagtctgcagaccaacagaggaggaggcctgtcactgcactatcgccggaggatctcggcaacgtagaatggtactacgttgtctgcatgacctacgccttccgccctggacaatggtacatttctttgataattactggtactacaattatgtcttaaaatgaatttcctgtgctctgaatcgtgccacagatggtggtactgctactagaattaattaaagcttcaatgaaattccctgtgctctgaattttgacacagatggtagttgcatatgtacgagacaattaatagaaagcgtacatgatatatactatcagaaatctatactcctaccttctatcaaattatactaacccactaagcacataaatatctcaacatgcaaaaatagtaattattagtacattctaattaaaggctaataattagtacatcaactcactaaacacctaaacctcaacatgcatgtgcagcaattacatcgtacaattcattacattcttaaaccttaatatacaaacatgctaaatacattatatatcctatatatttataaagttcatactttgcaagtgcaattaaagttattttcctcttctttcgttgtgccccatcacctcaatatatttcatctgttagatcaaagtttagcgctccagatggttccaaagtacctttgctaagggccatattggattaagcttagttggttcagattgttttagtaccatacattatagcgcttgcatttactccttctgtgcagccatagttatttctatttcgattttggactagtgttactatatatcatgcatacattaattctattagaaaaaagactagtaagacttgctaaatgaaccaatttctcagttcctacatgtcatgtttttctcaataaatatgttcaggttgattcgattcatgttcatgtcgatttgattttagctcctatacccaataccttttaatttcatttcatcgatttgcttatgttaattttacagatatttcagtaacagcgtgcggagtatcatgcatctagtatataaaatacatgcatatatatgtaacctaaactgaaaatagtggacacttgaagcaaattacagtacatggttgatttgtactagacattcattctcaatgggtaattattttcattaactgtagtgtctatctttagcatatatacgcgtttcatacacaaaaatctacttcctccatctaaaaaaaaagacaaaccgtgggttcccgtgccaacgtttgactgtccgtcttatatgaaatttttttataattagtattttcattgttgttagatgataaaacatgattaatactttatacttgacttatctttttaatttttttcataatttttttaaataagacggacggttaaacgttgaatacggaaaccggggtatgtttttagaacggagggagtagctgataaacataattctcattcaccgacggattgctagtattatatcgatcccatgtaagtaggcagaggtcagagatacacaaggtagctagtcaagcatatgtacagtgttgttacttgaagtgttgtgcgggtacagtgtactgaagtgttgtaaattaggctgtgtttagatctaaagtttggatctaaacttcagtccttttccatcacatcaacctgtcatacacacataactttttactcacatcatctttaatttcaactaaaatctaaacttgcctagtacttcactgatctagtggtggtgtacgtggatgcatgaacttacagtttgccagcatgcactatttattggtgtccgtacattaattatgagcaccactgatgggtaatactactcatcagtatcggttgttggcagtacgtacgtactctagtaacgtgaccggaagtgtggaccggtgggaaacctaattttgtttgtcttttgtcaaaccaacaccggaagtgcggtgccgttgtgggttttcattccgaccgtccgtcttatttaaaaaatttataaaaaaattaaaaaattaatcacatataaaatattattcatgttttattcatctaataataacaaaaatgctaattagaaaatgttttcaataagatgaatggtaaaactacaccttttttagacgaatgtagtattgatgtgtactctctccgtctcaaaaaaaacctcaacctattattggatgggacgttttctagtataacgaatctagacaggagtatatctagatttattgtactagaaaacatcacatccaatactagattgagttttttttggaaggagagagtagatgtgtagcttctgcccggacggttggcagtcgtaagtccaacctatcctgaagtgttgtttttattgatctgcttgtggtgtgcgtggtgtatgcatgcactgtcagtgtgccaggtaaaagctttgcaagcaatggatgtgcctggctgtgcaacgctcagtctgccgatagcaaagccttcccgcgcaagctcttagccaaggtacgtacattaattaattaataaattaaccggctcattaattcatggcatatagttgatcgacctaacttatgcatactctctcttttgaccaataatttgttatatatatgcagaacgcttctattcaggtatgtacatattctacatgcatgcttcgtcaggtcaaattgatgttcgtacgtcacatatatactgtatattatttctga
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| CDS seq | atggcatctgctccttcagctcaggaagaacccctacagccagggacgatgcaattcaggaagcagcttgctgctgccgtgaggagcatcagttggacctatgccatcttttggtccatttcaactactcgtccaggcgagcaactgagggagctgtacaactctctcctctctggtgagtctgcagaccaacagaggaggaggcctgtcactgcactatcgccggaggatctcggcaacgtagaatggtactacgttgtctgcatgacctacgccttccgccctggacaatgtgtgccaggtaaaagctttgcaagcaatggatgtgcctggctgtgcaacgctcagtctgccgatagcaaagccttcccgcgcaagctcttagccaagaacgcttctattcaggtatgtacatattctacatgcatgcttcgtcaggtcaaattgatgttcgtacgtcacatatatactgtatattatttctga
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| Protein seq | MASAPSAQEEPLQPGTMQFRKQLAAAVRSISWTYAIFWSISTTRPGEQLRELYNSLLSGESADQQRRRPVTALSPEDLGNVEWYYVVCMTYAFRPGQCVPGKSFASNGCAWLCNAQSADSKAFPRKLLAKNASIQVCTYSTCMLRQVKLMFVRHIYTVYYF |
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| Function | Anthocyanin regulatory Lc protein [UniProtKB/Swiss-Prot:P13526] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0022580 | OsCMeo_01g0022580.01 | Chr01 | 23345043 | 23350425 | + | NAM | ||
| CDS seq | atggcatctgctccttcagctcaggaagaacccctacagccagggacgatgcaattcaggaagcagcttgctgctgccgtgaggagcatcagttggacctatgccatcttttggtccatttcaactactcgtccaggcgagcaactgagggagctgtacaactctctcctctctggtgagtctgcagaccaacagaggaggaggcctgtcactgcactatcgccggaggatctcggcaacgtagaatggtactacgttgtctgcatgacctacgccttccgccctggacaatgtgtgccaggtaaaagctttgcaagcaatggatgtgcctggctgtgcaacgctcagtctgccgatagcaaagccttcccgcgcaagctcttagccaagaacgcttctattcaggtatgtacatattctacatgcatgcttcgtcaggtcaaattgatgttcgtacgtcacatatatactgtatattatttctga
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| Protein seq | MASAPSAQEEPLQPGTMQFRKQLAAAVRSISWTYAIFWSISTTRPGEQLRELYNSLLSGESADQQRRRPVTALSPEDLGNVEWYYVVCMTYAFRPGQCVPGKSFASNGCAWLCNAQSADSKAFPRKLLAKNASIQVCTYSTCMLRQVKLMFVRHIYTVYYF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g39560 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0577300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0022630 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0022250 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0022510 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0021970 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0021670 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0374500 | SBH | 0 | 0 | 0.010699 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0021620 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0361600 | SBH | 0 | 0 | 0.013871 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0021660 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0021610 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0021780 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0021870 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0021610 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021940 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0021680 | RBH | 0.0 | 0.0 | 0.0 |
