Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0021940 | OGI:01068300 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:22728589-22731074 | ||||||||
| Gene Symbol | BHLH117, OsbHLH117, bHLH117, OsbHLH118 | ||||||||||
| DNA seq | gcaagcccttttccttgtgcttggcgaaagcgtttgttgatagatgatatataatcgatctctagctcggaaataaagcacgtaggctggacatgcaatgcatacatgatcatcaaactgatcagaactaaattatgacgacaaggagaagaagaagaaaaaggagaagagaaaaaaaaaaagctagctaatagggtccatggcatgcatgatgattccatcgatatgatcgtagctagttaatcaccatgcctaacaatgatgaatctatcatatgatggtctcacattggacaacacattgcaacagttgctttgcatgcatgccgccatgcgccttcatggcttccatgtcgtcgtcgtcgtcgtcgtcgtctccaatctatctagctaaattgattagatcagctgctcgactcctcctcctccgcatcctagggtttccgggaaggcgaaggctggcatggcggcgttgctgttgttgtaggttggtgaactggatgtcgccatggtggtggcggcggcggtgttgatggacatggcggcgttcgggtagttccggcggtctagggtttgcagctccctgatctgggacttgaggaagcggaggtagttggcggcctcgtcgagcatggaggccgtgtccatcttggcgccgccggggacgagcttctgcaggacgcgcaggcgctcgctgatgcgctcccgccgctgccgcgccgccaccgtctgcgggtcggaggagatgcgcacgttgcggcggcgggggcgctcgccggcgtcctcggcgccgagggtcacggggcgcatcgccgccgcgcggtagatcatctccttcacctgcgccagcgcctccgtgtcgggctcgtacagtgggtcgtcgccgccgccgccgccgcagttgccgccggggcccctgccgtcgaagctgatgctcgacgagctgctgctcagcgacggcttcgcccgcttcgacgccggggcgctcgtgctgaacgcgatctggatgccgccgtcggcgccggcggtgttcgacgccaggaggctgcagagagggttgtcctgcgacgacatgtccgccgcggcggcggcggcggttggctcggcggccttccgctttcttcccggccggcgttgcttacgtccacatccgccgccgccgccgcctcctctgactcgttcgcactggctggtcgttgcagtggcagtagtcatcgccaccgtggcgctcaccgcgtcgacgacgtcgtcgttgccgatgccggagaagaccgtcgcgtccatggcgccgccgccgtcaacggaggcggctgcggtcgcgaacgcaggtggtggtggtggtggtggtacagcgctcaacgtgacagccggtgttgctggtgcgacgtcgtactcggcagccatccccatcgcgccctggtggcgatggtgatgctgccgctgtcgctgcaggacatccgcgtcaacgtcagcgtaggcaggcgtccccgtcgccatcgccgcgaaggcgaccgccgcctcgacgccgccgtcaccggccgtcggcggcggcaccaccgccaccttgccgccgcccccgccgcaccccggcgcctggatgccctgcagctcgagtatcgccgccgccagggcctcgtcgagcaccagcctctccagcatcgtcatgccgctcccgtccaccgcattgacaccacccacctccggcggcagcaccaccgccccaccatctccatctccgccgccgccgccgccattccacacgctctcgctcaagatcatctcgttgaagccacgatccatccacaccgtcgtcgtcgtagctaacctaccaagaatcaaagaaagaaaagttagagatggaagaagcagcctgatctaacctccatgaggcagctgatcttaaaattacaaaaatcaaatggaagtgtacatacctctcgttactctttagttgggttgatcgatggatcgagctggtgagagtggtagcactacttactcactggctcactgcaacagctgatctaaacatgtgggctagctgttgattctatgggagttatgcacagctaggttggaggagcagagatcatcatatgggctatgaaatgaattgcagcaacagaaagagcattcacgcaataaacgctcgaggcagcacagcagcaagaggagggaggggcctgcaggctgcagtagtagctagctgctgctggtaatggtgcaaaaggcgagagagagatagagagagagggggtagcgagaagaaaagcaataagacaagatgcctgcctgcctgcagcgagctatgcagcagggactccacttttggattgctatgaggaatttatgctctcttctctctcttctctctctctgtttctctctctagagattcttcttcttttttttttttggaagcaaactgtttatctctctagagaggctctgggtagtgtgtgtagtgtgctcctctagcaaaaggct
More
|
||||||||||
| CDS seq | atggatcgtggcttcaacgagatgatcttgagcgagagcgtgtggaatggcggcggcggcggcggagatggagatggtggggcggtggtgctgccgccggaggtgggtggtgtcaatgcggtggacgggagcggcatgacgatgctggagaggctggtgctcgacgaggccctggcggcggcgatactcgagctgcagggcatccaggcgccggggtgcggcgggggcggcggcaaggtggcggtggtgccgccgccgacggccggtgacggcggcgtcgaggcggcggtcgccttcgcggcgatggcgacggggacgcctgcctacgctgacgttgacgcggatgtcctgcagcgacagcggcagcatcaccatcgccaccagggcgcgatggggatggctgccgagtacgacgtcgcaccagcaacaccggctgtcacgttgagcgctgtaccaccaccaccaccaccacctgcgttcgcgaccgcagccgcctccgttgacggcggcggcgccatggacgcgacggtcttctccggcatcggcaacgacgacgtcgtcgacgcggtgagcgccacggtggcgatgactactgccactgcaacgaccagccagtgcgaacgagtcagaggaggcggcggcggcggcggatgtggacgtaagcaacgccggccgggaagaaagcggaaggccgccgagccaaccgccgccgccgccgcggcggacatgtcgtcgcaggacaaccctctctgcagcctcctggcgtcgaacaccgccggcgccgacggcggcatccagatcgcgttcagcacgagcgccccggcgtcgaagcgggcgaagccgtcgctgagcagcagctcgtcgagcatcagcttcgacggcaggggccccggcggcaactgcggcggcggcggcggcgacgacccactgtacgagcccgacacggaggcgctggcgcaggtgaaggagatgatctaccgcgcggcggcgatgcgccccgtgaccctcggcgccgaggacgccggcgagcgcccccgccgccgcaacgtgcgcatctcctccgacccgcagacggtggcggcgcggcagcggcgggagcgcatcagcgagcgcctgcgcgtcctgcagaagctcgtccccggcggcgccaagatggacacggcctccatgctcgacgaggccgccaactacctccgcttcctcaagtcccagatcagggagctgcaaaccctagaccgccggaactacccgaacgccgccatgtccatcaacaccgccgccgccaccaccatggcgacatccagttcaccaacctacaacaacagcaacgccgccatgccagccttcgccttcccggaaaccctaggatgcggaggaggaggagtcgagcagctgatctaa
More
|
||||||||||
| Protein seq | MDRGFNEMILSESVWNGGGGGGDGDGGAVVLPPEVGGVNAVDGSGMTMLERLVLDEALAAAILELQGIQAPGCGGGGGKVAVVPPPTAGDGGVEAAVAFAAMATGTPAYADVDADVLQRQRQHHHRHQGAMGMAAEYDVAPATPAVTLSAVPPPPPPPAFATAAASVDGGGAMDATVFSGIGNDDVVDAVSATVAMTTATATTSQCERVRGGGGGGGCGRKQRRPGRKRKAAEPTAAAAAADMSSQDNPLCSLLASNTAGADGGIQIAFSTSAPASKRAKPSLSSSSSSISFDGRGPGGNCGGGGGDDPLYEPDTEALAQVKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAARQRRERISERLRVLQKLVPGGAKMDTASMLDEAANYLRFLKSQIRELQTLDRRNYPNAAMSINTAAATTMATSSSPTYNNSNAAMPAFAFPETLGCGGGGVEQLI |
||||||||||
| Function | Transcription factor bHLH87 [UniProtKB/Swiss-Prot:Q8S3D2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0021940 | OsCMeo_01g0021940.01 | Chr01 | 22728589 | 22731074 | - | NAM | ||
| CDS seq | atggatcgtggcttcaacgagatgatcttgagcgagagcgtgtggaatggcggcggcggcggcggagatggagatggtggggcggtggtgctgccgccggaggtgggtggtgtcaatgcggtggacgggagcggcatgacgatgctggagaggctggtgctcgacgaggccctggcggcggcgatactcgagctgcagggcatccaggcgccggggtgcggcgggggcggcggcaaggtggcggtggtgccgccgccgacggccggtgacggcggcgtcgaggcggcggtcgccttcgcggcgatggcgacggggacgcctgcctacgctgacgttgacgcggatgtcctgcagcgacagcggcagcatcaccatcgccaccagggcgcgatggggatggctgccgagtacgacgtcgcaccagcaacaccggctgtcacgttgagcgctgtaccaccaccaccaccaccacctgcgttcgcgaccgcagccgcctccgttgacggcggcggcgccatggacgcgacggtcttctccggcatcggcaacgacgacgtcgtcgacgcggtgagcgccacggtggcgatgactactgccactgcaacgaccagccagtgcgaacgagtcagaggaggcggcggcggcggcggatgtggacgtaagcaacgccggccgggaagaaagcggaaggccgccgagccaaccgccgccgccgccgcggcggacatgtcgtcgcaggacaaccctctctgcagcctcctggcgtcgaacaccgccggcgccgacggcggcatccagatcgcgttcagcacgagcgccccggcgtcgaagcgggcgaagccgtcgctgagcagcagctcgtcgagcatcagcttcgacggcaggggccccggcggcaactgcggcggcggcggcggcgacgacccactgtacgagcccgacacggaggcgctggcgcaggtgaaggagatgatctaccgcgcggcggcgatgcgccccgtgaccctcggcgccgaggacgccggcgagcgcccccgccgccgcaacgtgcgcatctcctccgacccgcagacggtggcggcgcggcagcggcgggagcgcatcagcgagcgcctgcgcgtcctgcagaagctcgtccccggcggcgccaagatggacacggcctccatgctcgacgaggccgccaactacctccgcttcctcaagtcccagatcagggagctgcaaaccctagaccgccggaactacccgaacgccgccatgtccatcaacaccgccgccgccaccaccatggcgacatccagttcaccaacctacaacaacagcaacgccgccatgccagccttcgccttcccggaaaccctaggatgcggaggaggaggagtcgagcagctgatctaa
More
|
|||||||
| Protein seq | MDRGFNEMILSESVWNGGGGGGDGDGGAVVLPPEVGGVNAVDGSGMTMLERLVLDEALAAAILELQGIQAPGCGGGGGKVAVVPPPTAGDGGVEAAVAFAAMATGTPAYADVDADVLQRQRQHHHRHQGAMGMAAEYDVAPATPAVTLSAVPPPPPPPAFATAAASVDGGGAMDATVFSGIGNDDVVDAVSATVAMTTATATTSQCERVRGGGGGGGCGRKQRRPGRKRKAAEPTAAAAAADMSSQDNPLCSLLASNTAGADGGIQIAFSTSAPASKRAKPSLSSSSSSISFDGRGPGGNCGGGGGDDPLYEPDTEALAQVKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAARQRRERISERLRVLQKLVPGGAKMDTASMLDEAANYLRFLKSQIRELQTLDRRNYPNAAMSINTAAATTMATSSSPTYNNSNAAMPAFAFPETLGCGGGGVEQLI
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.177176 | 0.0 | 7.642421 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0566800 | RBH | 0.0 | 0.086989 | 4.132289 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g38610 | RBH | 0.0 | 0.000000 | 1.775374 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0566800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0022010 | RBH | 0.0 | 0.0 | 6.998605 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0021630 | RBH | 0.106038 | 0.0 | 4.934649 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0021330 | RBH | 0.0 | 0.068436 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0021120 | RBH | 0.0 | 2.930204 | 31.302216 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0367600 | RBH | 13.153429 | 0.366224 | 0.7705305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0021090 | RBH | 0.0 | 0.0 | 1.337700 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0355900 | RBH | 13.4764235 | 0.4024085 | 4.4634985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0021110 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0021020 | RBH | 0.080971 | 1.377584 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0021260 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0021280 | RBH | 0.295919 | 0.0 | 1.335747 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0021090 | RBH | 0.546991 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G020120 | RBH | 0.0 | 0.0 | 0.867744 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019840 | RBH | 0.148535 | 0.0 | 10.095651 |
