Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0018940 | OGI:01057650 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:18997621-19001319 | ||||||||
| Gene Symbol | Os_F0780, OsFBX9 | ||||||||||
| DNA seq | aatcccaccgttcctttgggggttcaccggcgggcggcggcgacctgcgtcgtgcgtcagtatgtgtcgcgggcctctgccttgctattcgccactccggtgaactccgcgcccctcccgtctcctccggcctcttcccgtagcgcgccggccgccgcccccactcctccggatccggatggcattgcagccatttaccgacgacctcctcgccgagatccttctccgcctcccgtcggcggcctccctccaacgcgccgcgctagcctccaagtgctggctcgccgtcgcctccggccccgacttcctccgccgattccgcgcccgccacacctcgtcgcctctcctcggcctgttcgtctcccacgggagctccggcctccccgtgttccaccccgccgcgaccgtccgctccgaccccgacctcggcgccgcggtactcgggggcgacttctcgctcatccgcgtcggggacggcgaggatccccgctggcaactccgggactgccgcaacggccgcctgctcctctgcggaggtagatccgtcgccgtctacgacccggtgtcccgccGgcgcgtctccatccgccgcccacaggacgaccccttctcggacgcctacattgccgactgcttgctgcacgggcgcggcgacaacggcgcggcgtcgttccgcgtggtgtccgtgcagcgccatggccggaggatgcgcgccgcggagtacaactccggtactcgagagtggagcttccacccgtgggtggaaaacatgaggcggcctcgccggggccaggcgatgcatgcggcggggattatcttctggaaatgcgaggacaattttgtgatattgcttgacacgctcacgatggaattctccatgctcagtctccctgtaagcttgttccagccttccaagtacgccataggggagatggaggatggcgtgtgctgccttgtatgccttgatggcaccatggacaacgtccacatgcaagtgtggctgctcatggaggaggacggtggtggcaggaggtgggaattggagaaggaaatgccggttagtgaagtgcttgacaggcattccctggtgcgacaagtccgaacagtggctagtggattggttcttgtttcctgggatgaccgctatcctcaatttgccattgacctgaagaatatgaaggtcatggctgagtttaggtgcagcggcgagacttatcttttccaaacgccatggccacccgctttgttggtcgatagcggtaagtctttcacacatcacttaggtacttccaaatatatgagtggattgcttctttagactacgagttggaacttactgtggataacttgctatgagaagtgagttgatcttaattgattgctagtgtagttttggtcactgtgttggtagagggcgagcattccaatcacttcaacagcaacttttggatttaattcttaaagaattaaactgaattataactctttggtttcatgcttcctgaactgaactgacagaactacaaattggctaattttatctgtttaatccgaactattagttatgaagaacatgtacatgttttttgtaaagtcatgtttagactttagatggagacctgccaatggccgcatttcatggtaggcatactgggttcaattaggcatctattgttttggaaagtaatttagatgtctcataaaaatgctacccacacagctgtttagacatctcataagatttatgtggtcattttttagtggctaacaaaaagtaggcatcacactaacgaaaaattgacgttattgttttgttgcatttcagttggtttggcctaagtcaaggtcaaggttgattcattttcatcattttgctaaacaaaaaatatccactcgatgctgatccaatgcaccttaaaccacagtgaccttttcttgaggtgtcagacaagatgcagcttgcttgaatgtcctcctcccttgttcttatatactacctccgtcccatataaattgcaattctagtttgtttagtactccctccgtactcataaaggaagttgtttaggacaatgtttaagtcaaaccttgggaatataaatcatgaataactctcaagttgttgagtttgaaaatgtaaaaattatatgaatagatttgtcttgaaaaatacttttataaaagtatacatatatcacttttcaataaatatttttatagaaacaagaaatcaaagttgtgttttggagaccgtgtcgctgtcctaaatgacttcctttacgagtacggagggagtatatattaaggtttgagaagaaatactatgatgccccttattaaatggtgtataggtaagagtggaagggtagtggagggtAaaatagaaaaagattaaatgagaagtgattaatgagacctattagtactctattgtgacaattattttgggacaaattcaaatcctagaaatacaattattatgggacagatgtagtagttttcagcaatgttcttgtgattcccatggtgttaaagcactagagaaacttattacatggtagtaatgttagtgccaagttcagtacggtatacagtggcagtaggaggggaaggctggatgtatgactgagagtcaagtagttaagaatggaatagtatgctgttttcctgtattatattgatgctcaaccgtacaaaaatcattgtttagcttatttgtataccctacagaggttcaaccagcggatttggctattcctttacaatctgcagaatatgtggagccgcttcagatgatcgctactcagaacatgatgaaacatgttaatcttgctgcagagagaactgatgttgtgaattcagaggtaaagatcagcttcagagtttcctttgtgaaatttgtgttgttctgataatctgtaactagtaactacatatgcatgcagggcccattggatttggtattggaaccacatggcccactggacgcacaacaagctatggctgctgaagcggagaccttggtggtaacagcagacctgaaattagtcaggtctactgaagcacaaaaccagtcagtagctgaaaaacctgaggtatttagcaattgctgcctgatttgtttctctgtcaaaattgttactcaaagcattacaactctgcatattttcacaatgatcgaatcagatcatgaaggggcctgaagtcccagtttcgaaaaggagcatgtcacgtttggaaaaaagaagaggggaaagatatgagagtgctctccacaaggcaatggagaggaaagctcgttacatgggtggtgtggaacagcttagtacttctcttggaagaaactacagaagatcagagaagccaattgttgtggactctagttacgagagatactaccagtgtcgtcaacgtcgagagaagccaattgttgtggactctcgttacggtaaatactaccagcgtcgtcaacgacgaccagccgcaggagttcagggaaggtgaggcagggcgcagctaaacaagtttggagggaagtagggttgaaggagatttgtattcagtggtaggaagtttatttgtattcagaaattactaaccattaacaccattcattcgcctgagcactggtatatgctttcgataactcataacagatacatttttgtaattcatatttacttgaaatttgtttttttt
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| CDS seq | atggcattgcagccatttaccgacgacctcctcgccgagatccttctccgcctcccgtcggcggcctccctccaacgcgccgcgctagcctccaagtgctggctcgccgtcgcctccggccccgacttcctccgccgattccgcgcccgccacacctcgtcgcctctcctcggcctgttcgtctcccacgggagctccggcctccccgtgttccaccccgccgcgaccgtccgctccgaccccgacctcggcgccgcggtactcgggggcgacttctcgctcatccgcgtcggggacggcgaggatccccgctggcaactccgggactgccgcaacggccgcctgctcctctgcggaggtagatccgtcgccgtctacgacccggtgtcccgccGgcgcgtctccatccgccgcccacaggacgaccccttctcggacgcctacattgccgactgcttgctgcacgggcgcggcgacaacggcgcggcgtcgttccgcgtggtgtccgtgcagcgccatggccggaggatgcgcgccgcggagtacaactccggtactcgagagtggagcttccacccgtgggtggaaaacatgaggcggcctcgccggggccaggcgatgcatgcggcggggattatcttctggaaatgcgaggacaattttgtgatattgcttgacacgctcacgatggaattctccatgctcagtctccctgtaagcttgttccagccttccaagtacgccataggggagatggaggatggcgtgtgctgccttgtatgccttgatggcaccatggacaacgtccacatgcaagtgtggctgctcatggaggaggacggtggtggcaggaggtgggaattggagaaggaaatgccggttagtgaagtgcttgacaggcattccctggtgcgacaagtccgaacagtggctagtggattggttcttgtttcctgggatgaccgctatcctcaatttgccattgacctgaagaatatgaaggtcatggctgagtttaggtgcagcggcgagacttatcttttccaaacgccatggccacccgctttgttggtcgatagcgaggttcaaccagcggatttggctattcctttacaatctgcagaatatgtggagccgcttcagatgatcgctactcagaacatgatgaaacatgttaatcttgctgcagagagaactgatgttgtgaattcagagggcccattggatttggtattggaaccacatggcccactggacgcacaacaagctatggctgctgaagcggagaccttggtggtaacagcagacctgaaattagtcaggtctactgaagcacaaaaccagtcagtagctgaaaaacctgagatcatgaaggggcctgaagtcccagtttcgaaaaggagcatgtcacgtttggaaaaaagaagaggggaaagatatgagagtgctctccacaaggcaatggagaggaaagctcgttacatgggtggtgtggaacagcttagtacttctcttggaagaaactacagaagatcagagaagccaattgttgtggactctagttacgagagatactaccagtgtcgtcaacgtcgagagaagccaattgttgtggactctcgttacggtaaatactaccagcgtcgtcaacgacgaccagccgcaggagttcagggaaggtga
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| Protein seq | MALQPFTDDLLAEILLRLPSAASLQRAALASKCWLAVASGPDFLRRFRARHTSSPLLGLFVSHGSSGLPVFHPAATVRSDPDLGAAVLGGDFSLIRVGDGEDPRWQLRDCRNGRLLLCGGRSVAVYDPVSRRRVSIRRPQDDPFSDAYIADCLLHGRGDNGAASFRVVSVQRHGRRMRAAEYNSGTREWSFHPWVENMRRPRRGQAMHAAGIIFWKCEDNFVILLDTLTMEFSMLSLPVSLFQPSKYAIGEMEDGVCCLVCLDGTMDNVHMQVWLLMEEDGGGRRWELEKEMPVSEVLDRHSLVRQVRTVASGLVLVSWDDRYPQFAIDLKNMKVMAEFRCSGETYLFQTPWPPALLVDSEVQPADLAIPLQSAEYVEPLQMIATQNMMKHVNLAAERTDVVNSEGPLDLVLEPHGPLDAQQAMAAEAETLVVTADLKLVRSTEAQNQSVAEKPEIMKGPEVPVSKRSMSRLEKRRGERYESALHKAMERKARYMGGVEQLSTSLGRNYRRSEKPIVVDSSYERYYQCRQRREKPIVVDSRYGKYYQRRQRRPAAGVQGR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0018940 | OsCMeo_01g0018940.01 | Chr01 | 18997621 | 19001319 | + | NAM | ||
| CDS seq | atggcattgcagccatttaccgacgacctcctcgccgagatccttctccgcctcccgtcggcggcctccctccaacgcgccgcgctagcctccaagtgctggctcgccgtcgcctccggccccgacttcctccgccgattccgcgcccgccacacctcgtcgcctctcctcggcctgttcgtctcccacgggagctccggcctccccgtgttccaccccgccgcgaccgtccgctccgaccccgacctcggcgccgcggtactcgggggcgacttctcgctcatccgcgtcggggacggcgaggatccccgctggcaactccgggactgccgcaacggccgcctgctcctctgcggaggtagatccgtcgccgtctacgacccggtgtcccgccGgcgcgtctccatccgccgcccacaggacgaccccttctcggacgcctacattgccgactgcttgctgcacgggcgcggcgacaacggcgcggcgtcgttccgcgtggtgtccgtgcagcgccatggccggaggatgcgcgccgcggagtacaactccggtactcgagagtggagcttccacccgtgggtggaaaacatgaggcggcctcgccggggccaggcgatgcatgcggcggggattatcttctggaaatgcgaggacaattttgtgatattgcttgacacgctcacgatggaattctccatgctcagtctccctgtaagcttgttccagccttccaagtacgccataggggagatggaggatggcgtgtgctgccttgtatgccttgatggcaccatggacaacgtccacatgcaagtgtggctgctcatggaggaggacggtggtggcaggaggtgggaattggagaaggaaatgccggttagtgaagtgcttgacaggcattccctggtgcgacaagtccgaacagtggctagtggattggttcttgtttcctgggatgaccgctatcctcaatttgccattgacctgaagaatatgaaggtcatggctgagtttaggtgcagcggcgagacttatcttttccaaacgccatggccacccgctttgttggtcgatagcgaggttcaaccagcggatttggctattcctttacaatctgcagaatatgtggagccgcttcagatgatcgctactcagaacatgatgaaacatgttaatcttgctgcagagagaactgatgttgtgaattcagagggcccattggatttggtattggaaccacatggcccactggacgcacaacaagctatggctgctgaagcggagaccttggtggtaacagcagacctgaaattagtcaggtctactgaagcacaaaaccagtcagtagctgaaaaacctgagatcatgaaggggcctgaagtcccagtttcgaaaaggagcatgtcacgtttggaaaaaagaagaggggaaagatatgagagtgctctccacaaggcaatggagaggaaagctcgttacatgggtggtgtggaacagcttagtacttctcttggaagaaactacagaagatcagagaagccaattgttgtggactctagttacgagagatactaccagtgtcgtcaacgtcgagagaagccaattgttgtggactctcgttacggtaaatactaccagcgtcgtcaacgacgaccagccgcaggagttcagggaaggtga
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| Protein seq | MALQPFTDDLLAEILLRLPSAASLQRAALASKCWLAVASGPDFLRRFRARHTSSPLLGLFVSHGSSGLPVFHPAATVRSDPDLGAAVLGGDFSLIRVGDGEDPRWQLRDCRNGRLLLCGGRSVAVYDPVSRRRVSIRRPQDDPFSDAYIADCLLHGRGDNGAASFRVVSVQRHGRRMRAAEYNSGTREWSFHPWVENMRRPRRGQAMHAAGIIFWKCEDNFVILLDTLTMEFSMLSLPVSLFQPSKYAIGEMEDGVCCLVCLDGTMDNVHMQVWLLMEEDGGGRRWELEKEMPVSEVLDRHSLVRQVRTVASGLVLVSWDDRYPQFAIDLKNMKVMAEFRCSGETYLFQTPWPPALLVDSEVQPADLAIPLQSAEYVEPLQMIATQNMMKHVNLAAERTDVVNSEGPLDLVLEPHGPLDAQQAMAAEAETLVVTADLKLVRSTEAQNQSVAEKPEIMKGPEVPVSKRSMSRLEKRRGERYESALHKAMERKARYMGGVEQLSTSLGRNYRRSEKPIVVDSSYERYYQCRQRREKPIVVDSRYGKYYQRRQRRPAAGVQGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.322032 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0509900 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g32640 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0509900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0019030 | RBH | 0.0 | 0.000000 | 0.307446 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0018650 | RBH | 0.0 | 0.0 | 0.463220 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0018320 | RBH | 0.0 | 0.085785 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0018250 | RBH | 0.0 | 1.315481 | 0.436315 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0306800 | RBH | 0.7639325 | 1.947193 | 2.2458555 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0018330 | RBH | 0.0 | 0.234043 | 0.147723 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0303800 | RBH | 0.9500825 | 0.6046265 | 6.62422 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0018270 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0018220 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0018470 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0018240 | RBH | 0.000000 | 0.189218 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0018140 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G018640 | RBH | 0.0 | 1.030234 | 0.168651 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0018340 | RBH | 0.0 | 0.0 | 1.527072 |
