Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0018120 | OGI:01052260 | 5/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:17080077-17099723 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaattcccatcacccatcctatcatctccctcatcaatcttactgtttaatgccaaaaatgaaactacctcgatgagctgaatccgtttctcaaacttctggtgacctctctaccttcctcctccacacacaccactgagtatgaatggccgtttttttttcttccaatctactcactaatcccttcctctcctgaatcaattttgtcgaagcaagatttcggcaataataaaaggggtggctatcaagataggaaagtggatgggtttggagacgaggaattttatacaggttcaggccttcttattcAaaaagtaataccctactcctgtccggggatgattccgccgagtgtattattgatcgtattatctaggaaaaaatcgtgccccgagaggcacacggacccctccttatataggggaaagggtccgctttacaaaatacagtccatatcccaacggaatatgggattatagataaaatacaatcgtaaccaactaggatcccgggtatttccttgacatacaagtttagaatctaacccgagtcctcataaagatattctatctatattcggtaccctgtacccagctgaaatataactgccatgtagatatggggtatccataatctccacactagcccccgagacctttgcagtcgccgaaatagccatctcagaacaaaaaacaataatccgagtgcttcacctcttcctgctttagcctgccgagtactagaatcaaagactgtgaagggcaaaaataaaacatggtgcatcgagtagatgcacctaattaggtatagcccccgactatatagttagttgaaaaactaaacaggtagtcaagaaccgagcggttttacaaccaaacatcaaacgacaagagcacacgtagtattcagtataatacccagccgactgcttttggacttgaatatatcaagaataaaaatatgaaaagggcccgagcgagaaacacttaaaaggtccacaaaaagacacatttgacaagaatccgagtaggaaactcttaaaatgatccaccaaatatgataaagatcatggtaattaagaagtttaatagcctaggctataaccctttccataatcaaaataagcatataacatgctaagagaatgactactaataaaccagtcatctcaaattaacccaaacagcttttgtagcctaaaaaagcttacaaaaatagtataacacttttctgttgggtaccttttatttgcatcgtagtaattctaaagaattatctaatcgcattaaaaaggattttagcagcatcgggtcacatcattgtgagcacaaattgctaaagcaaaaagtgcctaagttcctaaggatcacaatgggccacgctggtaataatattgggctgaagtactgtacaggcctaggcctgttagcactcccgataccctaacaaagtaccaaagtccaagcggcgcttcgttttccccgccgagactctcgccatttccccactccttgctacagtatcaaaccgcaccgtcaaagctagggttcatcaatccgccccaatccattctcaaaaaatcccacgaaacctctccgcatgtccaccgcattgattcctcattcccctccacctatatcttggaccaaatcaatccattcaacttgcatccatggcagaagagagagaaagtttcgagagtcagtgggctccctccgatgtaacggaagagaatctaaaagaaatggtggcgcacggcgttcttccggcgaaggaaatcatcgggtggcgaccagcgttcggcgaggcaatcccgacccccgatacacatgagatcgtggtattctctcacttcttctatggcggattttctcttccaacctcaagattcttccggggaattctgaacttctacgggattagcttgcatcatctgaatccaaactccatagtgcatatctccaattttattcatgcctgcgaagcttttctaggcattaggcctcatttcgccttgttccgccgcatcttcttcctcaagccccagccaaacaagagcaaaccatgtgttgttgggggcgctggtttccaactcaggggaacactaagccaaaaatacttctccatgcccttgaagacctcaaacaaaggctggcacgccaactggttctacgttcaaaatcctgaaccagcccttcccgagtattcttgtctccctacggtctaccaagacacatggaattcattgcctacaggagatgaggctgcccaagcagtggaactgatggagcgcatgataaagctaaaggagcagggtttgtaaggagaacaaatcacgcggcacttcataaaaagccggttagctccaatcaaagagagatcccgcacagcttttgagtttgacagcaaacatgatccaaatcgtgaagatccagactctcttgactttaaggtcatgaaggaaaggatgtacaagatcttctcaaatgccatcatcgtcagctattcgcacttgctgccagtcgtgccattcaatgccttcaatcctcctccaccggtatgtaatcaaacacttcaacctttcacaaaatatggtcttgtctgtttgttgaattagttaacaatgaaggatattacgcctaggaatttgctttgatgaagtcggatcccccaatcactcaacgccgatcaccccaccaccaaaccggtcaagggagcgagggtcccaaaatccgttccgaagcccggccaaatacctccgatccagccggccagccagattcgcgcaaaaggaagttggtgtcgagtgacgacgaaggcgataccgctagaaagcctggagaccgagaaacaaccaagaaactgccgaagcaggctactccaaggaaaaaaacatccagtcatccagtgccaaagatcaggaagtcttccaggtacaaatcacataacgatcttccttgcattgatgtgtacctagtgtagtaataatactgataaccaaacttgtaggaaaccatctgatatagatccttcgggaaaagactctgacccgaccagcacgggaacaaacttaaaagaaaccgagccaaccgctgaggatcatccgagtgataaccagccagcaaccgataatgtaggatctggtgatcaacccccaaccggaaacgagtcggccgaggctagagccggggttaaccaggagcccccgatagaaaaccagtcgggcactagaccaagccaagagattccagaagttggagctcaggcagacaaccctcataaacaagacaccagcagtgacccgacgccagaatctcccgttaagacgcaagagtcgactcgtccccgttcggaaatcatcacgggtaaacaccttgcccgaaaccgtgttgatccaaatgactctaatcaatcgtctaacctttatacgtggatacattaggaccaatgattggtgatgaagaagaaattccccgtatacaggcggctgaagactcgcgccctcccatcctaattaagtggtgggacgacgatatgcaacctcaagaaatcgtgataagcaagcagaaagaagatgaagaagtatgcttgctaaaaaagacactcagccaggccactcatattgtaaatgtaagtccatttgtgcatagctttaattgtccccttccatatcttgctgaaacgccgataaattcatattgcagaggattcatctcaggaatgaggcgaaaaccacaactcttgagaaattagttccccatcttggaactctcgaatctactaaaaaccagctacatgaggacaaggagctcgcgagaaaaactgagatgatctgaggaatagaatctccgagcttcaagaatccaactatgaattgagtggttcgtccaaaggtaaataccatatctgtctgacgtattcgtgaagccttccttgtgatatcaattaaccgaaaaatattacagtgcaagctgctaggatttccgacctagagaagcaggtcaaggctctggagaaagacaaggccgaattagcaaagcagagggactcggccttaaaagatgatgaaggtaatgataattgattccccatgttcttatagccgttcgctgatatgaatctattgatgcagatcgcaaaatcaagtcccaggcacagtttgatgtcttagttgacaagatcaataggcttgaaggagccagggataaagtcgctaatgccgctaccccactcatccaagccatgttcttcaataacaccggtccgagtacacttgacgcttccgagatctttgacaagctaagagtcgctctggatacttacttcaagaatatcagggaggctgggagtatgggagcaagcatggcattagccatgaccaaatctttataccccaaaatcgataccgacgccattgatgggtttgcagacgggacgagcgaagaaacagccctcgacctcatcaatgatgcgcaaaaagctgctgacaagattgctgctgacgtagttgagagattccaagatgccgaccttcggccgactgggtctgataattccgatgatgaaagaactgacactgattagtaacagtgattctgatgatgatggaagatcaatttgtacaatactgatgaatttatgttgtgctagacaattctaacttagcctctgatttcttaaaagtgtttgtcaaaccttattgagcctagaactcgcaaaagttattaaaaaactttcagtcctcattgactaagccaaaaaatcaagcagggcaatgataaatcaagtaagcaaattgaattgataaaaatcatgttccattattattatagcatccccccgactgaaagcttcaaggaaaaaacttgaagttagtagtcaaagaggaaagatacaaacgaaatgcctaagcataaaatcgacgaaggtgttcaatattccaagaattattgacaagagtaccatcttcacgcttgagtcggtaagatcctggccgagtgacttcagctattacgaacggtccttcccacaaggcagataacttgtgccgatcctgtgtagtttgaattctcctcagaaccaggtcgccgactaaaagggctcgcgatcgaacattccgattatgataacggcgcaacccttgtaaattccgagccgactggattagggctgtttcacgggcttcttccagtcggttgatatcatccactcgatcttcttcatagcgctcctcccggaagttgcgaaatcggagggattcaaactctacctcacttggcagcattgcttctgcgccataaaccaagaagaacggcgactggccagtagcccaactgggagtggtgcgtaaagaccaaagtacggacggcagctgttctgcccacttgccagcatagggacgcagtcggtcgaaaactcgtgctttgatcccttgaaatatcatgccattagcgcactcgacttgtccgttactcatggggtgtgccacggaggcgtaataaattctaatgccaaagtcttcacaaaagtctttaaatactccgccggtaaattgagtgccgttatcagtaataatatgattcggtaccccaaaccgatgtacaatattgatgaagaaatctctagctttgtccgcagtgattttgatgactggtttggcttcaatccacttggaaaacttatccacagctacaaagagatgagtataaccaccgactgcctttttgaatggaccgaccatatcaagaccccaaaccgtgaacggccaagacagcgggatggtttgcaactcctgagctggtaagtgagcttgtcgggcaaagaattgacaaccctcacatgttcgcacaattttgtcggcgtcggaaacagctgtgggccagaagaaaccctgccgataagctttgccgacaatggttcgtgcagcagcatgattaccacagatgcctgaatgaatatcttttagcaattgtcttccctcttccaaagatacgcagcgctgcagaattcctgatgggcttttcttgtacaactcggtctcgtgaatgacgtagagtctgctgcgcctggaaatctgctcggcttcatttttgtcttgagggagttcttgtttggtcaaaaatcttatgagaggttctctccagtcggtttcaatcatgcttacgccttgagtatccatggcttcaattgtttcttttctgggcacggttggttcgtaaagatgttcgacgaacacatctgaaggagctgtttcccgttttgagccaaaattggccagtctgtctgctgcctcattattgtgtcggaggacatgggtgagctcgagtccatcgaatttatcttccaacttgtgtacctcttgtcgataagcggtcatattatcatcaagacaggaccactctttcatgacttgattaacaaccaactgagagtctccacggaagattagtcggcgaatgcctagagagattgcaatccttaatccatggagcagcgcctcgtattccgccacgttatgggacacaggaaaatgtatccacaatacgtagctcaatctttctccggtcggggaaattaaaacaaccccagctccagtgcctgtaagcctcttcgacctatcaaaatgcatagtccaatattccatcttttcctccggcatgtcttcttggcactcggtccactcggtgaggaaatcagataaagcttgtgacttgatcgaagttcgtggcttgaaagatatgtccaaagacatcaattctaaggcccacttcgcaatccatccgtttgcttcgcggttatgaagtatatccccgtgtggaaacgatgtgaccaccgtgaccgagtgactttgaaagtagtgagataatttcctgacggtaattaagacaccatataataacttttgaacctgaggatatcttgtcttagagtcggccaaaacctcgctaacgaaataaattggtcattgaactttttgaatatggccttcctcttcacgctcgacaaccagggccgtgctcacaacctgggaggtcgccgacacatataacagtagcggctcctgtggatgtggcgaggccaaaactggtggagtagtgagaagtttcttgaagtcttctaaggctttttgtgcttcgggtccccactggaaattgtcggttttcttcagcagcttgaaaaagggcatcccccactcgccgagtcgtgagacgaaccggctgagcgccgccatgcaaccagtcagcttttagacatctttctgggagctcggcggtttcatgttgaggatggcgttgattttctccgggttggcctgtatgcctctacgagacaccataaatccgagcagcttccctgacagtactccgaagatgcacttttcagggtttagtttcatcctgaaggcgcggatgttcgcaaaagtttcttctatgtccgcaatcagatcatccttcttcttggtcttgacgactacatcatcaacataagcttcaacattgcggccgatctgagttgaaaaacacctctaaatcatccgttggtaggttgctcctgcgttcttcaatccaaagggcatggtgatgtagcagtaggccccaaaaggcgtaataaatgaggtcttcaagcagtcggattcttttagtcggatctgatgatatcccgagtaagaatccaaaaaactgagtagctcgcatccggccgttgagttaactacctggtcaatgcgaggtaacccaaaaggatctttgggacaagacttgttgaggtcggtataatcgacacacatgcgccattgccccgtctttttccgaaccaagactgggttagccagccagtcgggatgaaggacttctttaatgaagcccgctgctaacagcttggttaattcctccttgatcgcatccttcctgtcttgtgcaaaacggcggagtcgttgcttgaagggtttggcgtcttccttaacatgtaaagagtgctcgatcacctctctaggaataccaggcatatcagatggtttccatgcaaagatatctttattattttgaagaaaggtgatgagcgcgctttcctatttacaatctaactcagcgcctattacagcagtcttagtaggatcagagggatctagtggaatcttcttagttttgtcgtcgccttcttcggtctttgacagcttggtcgcaggcacttctccttcgcttgccatggtcgcagccagtcggatgtctttgcgagcgagagtgatctcgcgggtctgggccatctcgcaactttctttgtcacatgtgacggcttgcttgatgtcgctccgtagtgatatgacacctcgaggaccaggcatcttcatcatcatgtaggtgtagtgtggaacggtcatgaatttggctagagctttgcttgtagtgtgtatagaaagtgaggatgagagctccttttatagcctcccaatgacggttatggcagttggaatggtcggaaatgccctctaaccgtcattggagcaatcttggacgtccacgccaaaccctgcatccaacggagcaaatgggggttcggctgagccatgggctggtccaatccagcccattttcgaatggcggcctcctagacttctactctttgcagacttgtgaattttggcccaattgatcgtgaaaattctaagttcttggcccattcattgataagtatatccttgacatcgtccgattgatttatcgtctgattcgatgtcgattctcctccactttatggttattctctgtaaaaggttagtaaacctaatactagtggaatattattattctaacatgaatatgcattgcaagcataactagttctcctctattttggtaatattgacggttgaaactaatcgcttacgaccgtcaacaatgagtcagctacggtcttcaacataggtaaatttgggatgcaagttacggggttcaagtttcgtgacttaaaatatgcatgcaactcaatttcacgaaggctagcagcaaccttatcacattctacaaggagctccgaaagaccaagtttcctatgaaatcttttcttgaagacgttattcatactttcgcaactttgagtcgaggtcatatcagttgtaaaagagtcacggaacacaatagcccacttcttcctcaaagcatacagatttgacatccatacgttatcctcaaacttgtattcactcaacaattcatgctacatcttgttgaaatgatactctgatctgtcctgatagacacatctcttaaaatcagttagaaacttgttaggatgcttatgaattacatgaccaagatttttacaaccatttagataaatgtgccacaaacaaagacaatgacttatatccgggagtacaaaagcaattgctgctgcaatggctgcgtcttgatcagtgaaaattgtgctcggatgcttgcctgacattgctattagaaaggtttcaaagagccaaacaaatgattcaatagttagtgtggataatataaggtaaaggaagtttataacaaagggaaatttcagtctatattgtagcttaccttgcatcccaaatctgcattgttcttttcaaagtttctgtgtttcttgattttgggcgtagagtgtctgttgcaccaatttcagttatgacacccataatatctggttaaagagaagatatatgtaaacaataaaccactaatgtataagaagtaaacgtaggaagacaaaaaagggataaagaggttataccaacatagaaagcatttctgtccacaagagacggggcgtcttgaaaaggtgtcaatgaaaaagttatggcaggaaaatcatcaaaagcatcaatgcattcttctaaggttgtccatttagtgaatgagatcatcaaagggttcgtaactggcctatatgttctgtttgcatatctgacagagaaggagtcaaagtagtaaaccttcccttcctgtagaagagtcctaagcttaatcatggcaggtggat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More
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| CDS seq | atggaggaggtcaaagcgttgatgtttgccgccggcgtggatgctgctgagtcctcgcacattggccacgacccacggctgcaatcctggtcaagggccggatttgcacgggctgaagcggtgcttcaagggttcttgattgattttgccaaggaatgttcgggctgctggttcaatcaagcagaaaagttagtaattatttttaaggtggaagaattggtgcaagcagacttggttttattctcctcatcttcagttcaggtcctcaacaacagtaagattgatgagggagatgataggatgggtgatgggaattag |
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| Protein seq | MEEVKALMFAAGVDAAESSHIGHDPRLQSWSRAGFARAEAVLQGFLIDFAKECSGCWFNQAEKLVIIFKVEELVQADLVLFSSSSVQVLNNSKIDEGDDRMGDGN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0018120 | OsCMeo_01g0018120.01 | Chr01 | 17080077 | 17099723 | - | NAM | ||
| CDS seq | atggaggaggtcaaagcgttgatgtttgccgccggcgtggatgctgctgagtcctcgcacattggccacgacccacggctgcaatcctggtcaagggccggatttgcacgggctgaagcggtgcttcaagggttcttgattgattttgccaaggaatgttcgggctgctggttcaatcaagcagaaaagttagtaattatttttaaggtggaagaattggtgcaagcagacttggttttattctcctcatcttcagttcaggtcctcaacaacagtaagattgatgagggagatgataggatgggtgatgggaattag
More
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| Protein seq | MEEVKALMFAAGVDAAESSHIGHDPRLQSWSRAGFARAEAVLQGFLIDFAKECSGCWFNQAEKLVIIFKVEELVQADLVLFSSSSVQVLNNSKIDEGDDRMGDGN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0018120 | OsCMeo_01g0018120.02 | Chr01 | 17089216 | 17098763 | - | IsoSeq | ||
| CDS seq | atgatgaaacaaagatctaccacactgatcttgtcttgctggatgaaaagggcaatagcatccatgttcaaatctatccacctg |
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| Protein seq | MMKQRSTTLILSCWMKRAIASMFKSIHL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| MX | Chr01 | 17095726 | 17098672 | - | OsCMeo_01g0018120.01 | OsCMeo_01g0018120.01,OsCMeo_01g0018120.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.365579 | 20.480856 | 3.272572 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0278200 | RBH | 3.3970695 | 7.099484 | 14.8446035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0276300 | RBH | 3.322442 | 4.241817 | 4.412631 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
