Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0013440 | OGI:01032390 | 14/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:11208473-11209946 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acgatacaaatttcggagattaattaaccttgggtcaaacaatacagactcaaaaaaccgatgaatgatagacacccagccgtgccggacaccacacttggataaaccaaagaattgtgcaaccaaaatgtcggatcgatgcgatatcaactgtcaacaaaacgccagcgcacgacggtacagagagtggattaatagttgatggcgcggcacgtcttcctgatctggcggacgctgcccgccggcatggccagcttgctgagcttgacgagcgcctgcgcgaagtcgatgttccagagcgtgccgttctcggcgtactcgttgacgtgctggagcgtggcgttgctgccgacgagcgcccagtcggagttgaacagcaccaggttgttcttgttgttcttgtagtagctgttgtccaggtagtcgccgccgacggccggcacgacgtagctcgccaggtcccccagcgtcgccgcgtcgatgtcgcggatgttgttcgccagcgtcgggttcggggcggatttgcaggtcttgctcaggacgttgtcgcggtagtcggcgttgatctcggagtccggcgcggtgaggcggtcgtcgaagttggagcagtgcgccttgccgatggagtgcgcgccggagaggatgaccagctcctccggggtgaaccccttcgccgcgaagttggcgatgagcttgccaatgtcggccttggagtcagggagcgtattttgggcgtccacggaggacgagacgatgccgtcgaggcggccggccgggacgtcgaagttgacgccgccgttgctcatgtacctcgacgcgtcgcggccagcgaacacgacgatgtcggcgcaggagacgacgccggggcatgcggtctcgagcttggccttgaccgcgtcgatcacgtcgagcccggcgatgccgaggttcgcaccggcgaacttctccggtgaaggatttgtggtcgaattatcaagaaggatcgatccgtcacacccctaatgtaaaaaacaacagtacagatattaacattcagtcacagataaatataaacatagcacactaaaaattaatcagacgactgataaatactagcaaattaaccatcaaaataattgtgattagagcacgcatggtgtaatttccgggagcatatcgtgtttacattgacgaagcagtcatggaacaacaggcgcacgagggcggcgcccttggatttgtcagcatcgaggaaggccttcacagtatcgtacacgacggactcgacgctgacgttgccgcacttgccattgtagaaacccaccgtcaacgcgcacggcgccgccgacggcaccacgatggcggcggctagccggacggccaccgccaacatgcacactgccatgaaaaccttcattttgacgtatactcgatcgatcgatctgcacaagagacttggatcgagtatgtggcgtctcttatgctctctagtggt
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| CDS seq | atgaaggttttcatggcagtgtgcatgttggcggtggccgtccggctagccgccgccatcgtggtgccgtcggcggcgccgtgcgcgttgacggtgggtttctacaatggcaagtgcggcaacgtcagcgtcgagtccgtcgtgtacgatactgtgaaggccttcctcgatgctgacaaatccaagggcgccgccctcgtgcgcctgttgttccatgactgcttcgtcaataacaacaagaacaacctggtgctgttcaactccgactgggcgctcgtcggcagcaacgccacgctccagcacgtcaacgagtacgccgagaacggcacgctctggaacatcgacttcgcgcaggcgctcgtcaagctcagcaagctggccatgccggcgggcagcgtccgccagatcaggaagacgtgccgcgccatcaactattaa
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| Protein seq | MKVFMAVCMLAVAVRLAAAIVVPSAAPCALTVGFYNGKCGNVSVESVVYDTVKAFLDADKSKGAALVRLLFHDCFVNNNKNNLVLFNSDWALVGSNATLQHVNEYAENGTLWNIDFAQALVKLSKLAMPAGSVRQIRKTCRAINY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0013440 | OsCMeo_01g0013440.01 | Chr01 | 11208664 | 11209868 | - | NAM | ||
| CDS seq | atgaaggttttcatggcagtgtgcatgttggcggtggccgtccggctagccgccgccatcgtggtgccgtcggcggcgccgtgcgcgttgacggtgggtttctacaatggcaagtgcggcaacgtcagcgtcgagtccgtcgtgtacgatactgtgaaggccttcctcgatgctgacaaatccaagggcgccgccctcgtgcgcctgttgttccatgactgcttcgtcaataacaacaagaacaacctggtgctgttcaactccgactgggcgctcgtcggcagcaacgccacgctccagcacgtcaacgagtacgccgagaacggcacgctctggaacatcgacttcgcgcaggcgctcgtcaagctcagcaagctggccatgccggcgggcagcgtccgccagatcaggaagacgtgccgcgccatcaactattaa
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| Protein seq | MKVFMAVCMLAVAVRLAAAIVVPSAAPCALTVGFYNGKCGNVSVESVVYDTVKAFLDADKSKGAALVRLLFHDCFVNNNKNNLVLFNSDWALVGSNATLQHVNEYAENGTLWNIDFAQALVKLSKLAMPAGSVRQIRKTCRAINY |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0013440 | OsCMeo_01g0013440.02 | Chr01 | 11208473 | 11209946 | - | IsoSeq | ||
| CDS seq | atgctgacaaatccaagggcgccgccctcgtgcgcctgttgttccatgactgcttcgtcaatgggtgtgacggatcgatccttcttgataattcgaccacaaatccttcaccggagaagttcgccggtgcgaacctcggcatcgccgggctcg |
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| Protein seq | MLTNPRAPPSCACCSMTASSMGVTDRSFLIIRPQILHRRSSPVRTSASPGS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 11208870 | 11209638 | - | OsCMeo_01g0013440.02 | OsCMeo_01g0013440.01,OsCMeo_01g0013440.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 161.580811 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0294500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g18970 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0294500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0013410 | RBH | 0.0 | 211.511841 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013170 | RBH | 0.0 | 14.114570 | 0.374023 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0013410 | RBH | 0.0 | 10.991210 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0012920 | RBH | 0.000000 | 3.848526 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0013030 | RBH | 0.0 | 104.866219 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0177600 | RBH | 0.0064405 | 0.4665475 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0012970 | RBH | 0.0 | 16.914865 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0176900 | RBH | 0 | 0.023896 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0012960 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013060 | RBH | 0.0 | 6.666521 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0013020 | RBH | 0.0 | 73.641479 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0013120 | RBH | 0.0 | 12.935699 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0012810 | RBH | 0.0 | 97.337395 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013110 | RBH | 0.0 | 60.457333 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0012870 | RBH | 0.0 | 99.782234 | 0.0 |
