Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0007320 | OGI:01017930 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:5801078-5806104 | ||||||||
| Gene Symbol | HOX29, Oshox29, OsHox29, OSHB5, HB5 | ||||||||||
| DNA seq | acaaaaactagcaccgcggttctcaaaatccaaaacatttgtacacgctgtttcatgagattacgtacgtaaattgcactagttgtaatattatatatccgttttgcattggggtgtataatgaaatgaaatcaaaggaaggtccagttgatgaacatgaagcagatgcagtgggcgccgccgccgtcgccgtcgaccaccttccacgccaccgccttctcgtacgacgccgccctcccaacgctcgacacgcacacccctccctccatgcacgccatcccctgcaatttagttaatcgcgtgccactaattaatcaatttgcaactgatgaaagcctcggtgaaatcttactgtatcttctattgataagatgataagattattaatgcattccatgtaatgtactcgctccattttagattataactcatttttgacttaaggtcaaagtcaaactgaaaaaagtagtaacatttttaacctaaaacaaatatattataaaaatatatttaattattaatttaataaaactaatttggtgttgtaaatattactatatttatctacaaacttaattaatcaaacttgaagtagtttgattttgatcaaagtcaaaattacttattaatctaaaagtatctttttttatgtatgaaaaataatttttgcattagtacttatctcatgtcagtttgtgatatgattatacctgctccatgatgttggggagctctgtgcacaggttcttcctcccttgatcgtcgaaaactttctccagcgtcatgtcttggagcgccaccagagttgtttcgagcatgtcgaggccagactggtttgcaaatgtgaacactggcatcgcctacatgaaaaatcagatggttaaatggtgcgttacactgtcaactttaaggtgaatttgtgtcaaaacaaaatttcagtcgagctgtagcaaagattcataagtcccggaaataaattcagagaacaaacaatcctccatgcatagcagtatgagtactggccccattcgagtttaagataaaagattacggacaggtaaaatgagaaagttattaacatttaacatctcgttaattaaattttaattatttaaatttaaaaatagatttatcttatattttaaagtttctatataaaaattttcgtacgaaatatacagtttaacagtttaattaacatgcttataaaaattaagataaaatctgtatctaaataagaaaaaaagggggctgaagaaaccttgagagaacagcagagtatggcactcggatgatgccaaactgctttcagaatcgattcattgctgctgtttgcatctacagatttgatgagttcagctccaaaatgaaatctgtataagcatagcatcatcagttatgaagagtgaacttttttttttcgttcaaaaaagagtgaactttttttaaaaaatcttgcgatgatggcaagtgaaaatttcttgacagatatgaactgtatcacacaagcagctgcgaagccacagacctgtagctctggcaaatccatctgggcagcgtcgccgcctccggagtcaccggtgagagctgcgcggcggcggcgccggcgccgggagggacgaggcgggaggacgagagcgccacggcgatcctctgcaccgacgagatgatgttgcgcatgtactgccgcgccatggcggccacgctgtcctgcaggtggccgtcgaacgcgaactggaacgcgatcgtcatcaccgccttggagctagagctcgccgcagcagcagcacagccgccgccgccgccattgacgccgctgatcctgctccgtggcgtcgcggcttcgagcgtggacgcgagatccaacgtgcagttcgggctcgacgtgtcctgacatttgcagggaaagaatattcagaacaacttctttttaaacataaaaattcagaagatttgatttgaaactattgtgtgagatttacttacgagaggagaatcgattgggatgatgcggaaaccggaaggcagcagtggggaatcatcactgaacgatgcgtcgatgggcgcaaagatgagctctgaacatgttcctgcactgctctcctctactccattgtacatctgccattgcaatcaggccaagaacacaagttttacagaggaaaaaaaaagaaaatgattcttcaactggtgataagtctcatgaatcaagaagtcacctgcaagaggaacagatcacggtgcaccagtgtatcttggtagttgctggcgtttcctagcttgataacttccaggaactgaaaaacaatagatggttgcatcaaaataattgagcaggaggacagaattggacaggaccttttatgtaactgacagacagtagaagatgaacttacctcttcaggttcaaacgtgtgtgctaaaggaagtatgacctgaccactgaatcctccaagacgggacatgggtaaattgcagaagtttggtttcatcgtggaggcgaagaatgcgtctaaattgctgtcggcccactgtgaccggtgttcgcgcaaaaattgcagtagtgatggaggagagacatcctagcaaacagcagaaatattgtatgaaaaaaactggacatgatcaaccaaacaaaaaaaatattaattctagtttcatagtgaagctaacctgcaacagcatggatgccttggcacaaagaacaccggtactgacaatagggagtccactgctgaatgttgcattgcaaccgatcactttggatgaattgacagagatgcaaacatcgtcgacgccatcgctctcgatcacggaccatccatcatcggcaagcccattgagagcttcattgaatcctctgaaaagagagcatgcaaaaaaaaaattcacacttttgagctggagaagattcatggcaagaaccaagaagcatctgctgttcaggagtcagtcctacctggtgagcttttggctcagagcacgcaaagccgcaggctgccttccccatcctgtgatcacagaacgtgtatcttcgtgtgcaacctgcctcaggtagcgcaaagcctgaattttgcataactgaattagtcaagaatttctacaaataagcaagaacagagtgctataattactgtaccgccatcgagatcttctgcgcaaccatggcagaagattcatacaaaggtcgtacaacttcaggcacgctccaaggctgcgaccacaaaatggcttaaatttcattctgctagatgaatgaactatttggacaagaaattgtaatggttagtacctcgaggtccatatgatcaacgatgtgtatcacgctgcctccaacatcgctaggccggatcaagaacccactgggaagcatctcacctctgataaaaggctggacaagtggcatgcttgggcctccttgcttgctactgagtgatctctcacacaccttcagaattcagagcaagaacgttcaggcaagcaggcaggacatcatagtgacacacaaatactttggtactaattacacatggataatttgttttacacgctccatgatcagagcagctcaccactaagcttccatcgtcgagaatggaggtgtaccgcagcagccagaagtcgcgagccggcgccagcgtcgtcggagcatagagctgaagatcgaatacaaatttcagcttcagaatttcaggttcaggttcagaattttcaggcttgtgtgttcttgcctgcatgtagagcagctcgatggtgccgttggcgccagcagggagcacgttcaccacatccatggaccggcaatcgcgcagccacagcggccgatccttgagtatttcggcaacctgatgaaatcattgccacaactcatcaatcaaccaaccaaccaatcaatcgatcgatcagaaatactgttgcttattgcagaagtgacagtgacaagaaggttaattaccttagcgggctccatgccgacgaggccgcaagctcgcgcggcgacgccggcgcagccatgcgagatggcgatgattccaatggaatccggaccaggctgcaaacgacgacgacgaaaatcaaatcaagcttttgcaattgagaagttggtgacgatgaagagcaaattgttgtgaccttcatcccaggcatttggagccactcgacggcggttccggtggccttggacagaaactccgtcaatgtctcctccgcgatcgacatcagcctgcgcaacaacgagtaagctagagctgcacctgcaagaacgatggcgcaggtggtgacgtcacgtacccagctgggcttgcgtcgcgcggcggcggctggacgacgttgtgctgctgctgctgatgatgatggccgctggtgacgaccgactcgcagctggtgtcggtggcggtggcgagctggtggccggcggcggcggcggcctgaggagggaaggcaggaactcgccgcatcatcccggcggcggcgacgccgtggcggccgtggtcgtagacgagctgggagacctgcttctggaggcggtcgttctcctccatgaggagcttgttcatggcggtgagcttgcggttgagcgcctgcagccgcgacgactccttgcgctgcttctcccggcaccggcggttctggaaccacaccttgatctgcttcgggtccacgttcgccagcgccgggcactcccgcaccagctgctgccgccgcagcgagctcggcttgggacactcgtagtacagcctctccagcgcctccacctgctccggcgtgtacctcacgtacttgctcgcgtccatcgccgccgccgacgccaccatgccagatcgatcgagctcaatgcaagcaagctaggctatagccgagaaggcgtagagctcgatggcgacatcgaggtgagggggggaaggagagcttcgtgttgttcgtcgtctcgtcgcctttaaacgcgaggacggcggtggcgcggcgcgcgcgcgctaataaattgcgggaaaaaggaaagttcccggctgcgacgtcgccggcgaatg
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| CDS seq | atggtggcgtcggcggcggcgatggacgcgagcaagtacgtgaggtacacgccggagcaggtggaggcgctggagaggctgtactacgagtgtcccaagccgagctcgctgcggcggcagcagctggtgcgggagtgcccggcgctggcgaacgtggacccgaagcagatcaaggtgtggttccagaaccgccggtgccgggagaagcagcgcaaggagtcgtcgcggctgcaggcgctcaaccgcaagctcaccgccatgaacaagctcctcatggaggagaacgaccgcctccagaagcaggtctcccagctcgtctacgaccacggccgccacggcgtcgccgccgccgggatgatgcggcgagttcctgccttccctcctcaggccgccgccgccgccggccaccagctcgccaccgccaccgacaccagctgcgagtcggtcgtcaccagcggccatcatcatcagcagcagcagcacaacgtcgtccagccgccgccgcgcgacgcaagcccagctgggctgatgtcgatcgcggaggagacattgacggagtttctgtccaaggccaccggaaccgccgtcgagtggctccaaatgcctgggatgaagcctggtccggattccattggaatcatcgccatctcgcatggctgcgccggcgtcgccgcgcgagcttgcggcctcgtcggcatggagcccgctaaggttgccgaaatactcaaggatcggccgctgtggctgcgcgattgccggtccatggatgtggtgaacgtgctccctgctggcgccaacggcaccatcgagctgctctacatgcagctctatgctccgacgacgctggcgccggctcgcgacttctggctgctgcggtacacctccattctcgacgatggaagcttagtggtgtgtgagagatcactcagtagcaagcaaggaggcccaagcatgccacttgtccagccttttatcagaggtgagatgcttcccagtgggttcttgatccggcctagcgatgttggaggcagcgtgatacacatcgttgatcatatggacctcgagccttggagcgtgcctgaagttgtacgacctttgtatgaatcttctgccatggttgcgcagaagatctcgatggcggctttgcgctacctgaggcaggttgcacacgaagatacacgttctgtgatcacaggatggggaaggcagcctgcggctttgcgtgctctgagccaaaagctcaccagaggattcaatgaagctctcaatgggcttgccgatgatggatggtccgtgatcgagagcgatggcgtcgacgatgtttgcatctctgtcaattcatccaaagtgatcggttgcaatgcaacattcagcagtggactccctattgtcagtaccggtgttctttgtgccaaggcatccatgctgttgcaggatgtctctcctccatcactactgcaatttttgcgcgaacaccggtcacagtgggccgacagcaatttagacgcattcttcgcctccacgatgaaaccaaacttctgcaatttacccatgtcccgtcttggaggattcagtggtcaggtcatacttcctttagcacacacgtttgaacctgaagagttcctggaagttatcaagctaggaaacgccagcaactaccaagatacactggtgcaccgtgatctgttcctcttgcagatgtacaatggagtagaggagagcagtgcaggaacatgttcagagctcatctttgcgcccatcgacgcatcgttcagtgatgattccccactgctgccttccggtttccgcatcatcccaatcgattctcctctcgacacgtcgagcccgaactgcacgttggatctcgcgtccacgctcgaagccgcgacgccacggagcaggatcagcggcgtcaatggcggcggcggcggctgtgctgctgctgcggcgagctctagctccaaggcggtgatgacgatcgcgttccagttcgcgttcgacggccacctgcaggacagcgtggccgccatggcgcggcagtacatgcgcaacatcatctcgtcggtgcagaggatcgccgtggcgctctcgtcctcccgcctcgtccctcccggcgccggcgccgccgccgcgcagctctcaccggtgactccggaggcggcgacgctgcccagatggatttgccagagctacaggtctgtggcttcgcagctgcttgcgatgccagtgttcacatttgcaaaccagtctggcctcgacatgctcgaaacaactctggtggcgctccaagacatgacgctggagaaagggatggcgtgcatggagggaggggtgtgcgtgtcgagcgttgggagggcggcgtcgtacgagaaggcggtggcgtggaaggtggtcgacggcgacggcggcggcgcccactgcatctgcttcatgttcatcaactggaccttcctttga
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| Protein seq | MVASAAAMDASKYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECPALANVDPKQIKVWFQNRRCREKQRKESSRLQALNRKLTAMNKLLMEENDRLQKQVSQLVYDHGRHGVAAAGMMRRVPAFPPQAAAAAGHQLATATDTSCESVVTSGHHHQQQQHNVVQPPPRDASPAGLMSIAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPAKVAEILKDRPLWLRDCRSMDVVNVLPAGANGTIELLYMQLYAPTTLAPARDFWLLRYTSILDDGSLVVCERSLSSKQGGPSMPLVQPFIRGEMLPSGFLIRPSDVGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKISMAALRYLRQVAHEDTRSVITGWGRQPAALRALSQKLTRGFNEALNGLADDGWSVIESDGVDDVCISVNSSKVIGCNATFSSGLPIVSTGVLCAKASMLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGFSGQVILPLAHTFEPEEFLEVIKLGNASNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFSDDSPLLPSGFRIIPIDSPLDTSSPNCTLDLASTLEAATPRSRISGVNGGGGGCAAAAASSSSKAVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQLSPVTPEAATLPRWICQSYRSVASQLLAMPVFTFANQSGLDMLETTLVALQDMTLEKGMACMEGGVCVSSVGRAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL |
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| Function | Homeobox-leucine zipper protein HOX29 [UniProtKB/Swiss-Prot:Q5QMZ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0007320 | OsCMeo_01g0007320.01 | Chr01 | 5801078 | 5806104 | - | NAM | ||
| CDS seq | atggtggcgtcggcggcggcgatggacgcgagcaagtacgtgaggtacacgccggagcaggtggaggcgctggagaggctgtactacgagtgtcccaagccgagctcgctgcggcggcagcagctggtgcgggagtgcccggcgctggcgaacgtggacccgaagcagatcaaggtgtggttccagaaccgccggtgccgggagaagcagcgcaaggagtcgtcgcggctgcaggcgctcaaccgcaagctcaccgccatgaacaagctcctcatggaggagaacgaccgcctccagaagcaggtctcccagctcgtctacgaccacggccgccacggcgtcgccgccgccgggatgatgcggcgagttcctgccttccctcctcaggccgccgccgccgccggccaccagctcgccaccgccaccgacaccagctgcgagtcggtcgtcaccagcggccatcatcatcagcagcagcagcacaacgtcgtccagccgccgccgcgcgacgcaagcccagctgggctgatgtcgatcgcggaggagacattgacggagtttctgtccaaggccaccggaaccgccgtcgagtggctccaaatgcctgggatgaagcctggtccggattccattggaatcatcgccatctcgcatggctgcgccggcgtcgccgcgcgagcttgcggcctcgtcggcatggagcccgctaaggttgccgaaatactcaaggatcggccgctgtggctgcgcgattgccggtccatggatgtggtgaacgtgctccctgctggcgccaacggcaccatcgagctgctctacatgcagctctatgctccgacgacgctggcgccggctcgcgacttctggctgctgcggtacacctccattctcgacgatggaagcttagtggtgtgtgagagatcactcagtagcaagcaaggaggcccaagcatgccacttgtccagccttttatcagaggtgagatgcttcccagtgggttcttgatccggcctagcgatgttggaggcagcgtgatacacatcgttgatcatatggacctcgagccttggagcgtgcctgaagttgtacgacctttgtatgaatcttctgccatggttgcgcagaagatctcgatggcggctttgcgctacctgaggcaggttgcacacgaagatacacgttctgtgatcacaggatggggaaggcagcctgcggctttgcgtgctctgagccaaaagctcaccagaggattcaatgaagctctcaatgggcttgccgatgatggatggtccgtgatcgagagcgatggcgtcgacgatgtttgcatctctgtcaattcatccaaagtgatcggttgcaatgcaacattcagcagtggactccctattgtcagtaccggtgttctttgtgccaaggcatccatgctgttgcaggatgtctctcctccatcactactgcaatttttgcgcgaacaccggtcacagtgggccgacagcaatttagacgcattcttcgcctccacgatgaaaccaaacttctgcaatttacccatgtcccgtcttggaggattcagtggtcaggtcatacttcctttagcacacacgtttgaacctgaagagttcctggaagttatcaagctaggaaacgccagcaactaccaagatacactggtgcaccgtgatctgttcctcttgcagatgtacaatggagtagaggagagcagtgcaggaacatgttcagagctcatctttgcgcccatcgacgcatcgttcagtgatgattccccactgctgccttccggtttccgcatcatcccaatcgattctcctctcgacacgtcgagcccgaactgcacgttggatctcgcgtccacgctcgaagccgcgacgccacggagcaggatcagcggcgtcaatggcggcggcggcggctgtgctgctgctgcggcgagctctagctccaaggcggtgatgacgatcgcgttccagttcgcgttcgacggccacctgcaggacagcgtggccgccatggcgcggcagtacatgcgcaacatcatctcgtcggtgcagaggatcgccgtggcgctctcgtcctcccgcctcgtccctcccggcgccggcgccgccgccgcgcagctctcaccggtgactccggaggcggcgacgctgcccagatggatttgccagagctacaggtctgtggcttcgcagctgcttgcgatgccagtgttcacatttgcaaaccagtctggcctcgacatgctcgaaacaactctggtggcgctccaagacatgacgctggagaaagggatggcgtgcatggagggaggggtgtgcgtgtcgagcgttgggagggcggcgtcgtacgagaaggcggtggcgtggaaggtggtcgacggcgacggcggcggcgcccactgcatctgcttcatgttcatcaactggaccttcctttga
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| Protein seq | MVASAAAMDASKYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECPALANVDPKQIKVWFQNRRCREKQRKESSRLQALNRKLTAMNKLLMEENDRLQKQVSQLVYDHGRHGVAAAGMMRRVPAFPPQAAAAAGHQLATATDTSCESVVTSGHHHQQQQHNVVQPPPRDASPAGLMSIAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPAKVAEILKDRPLWLRDCRSMDVVNVLPAGANGTIELLYMQLYAPTTLAPARDFWLLRYTSILDDGSLVVCERSLSSKQGGPSMPLVQPFIRGEMLPSGFLIRPSDVGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKISMAALRYLRQVAHEDTRSVITGWGRQPAALRALSQKLTRGFNEALNGLADDGWSVIESDGVDDVCISVNSSKVIGCNATFSSGLPIVSTGVLCAKASMLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGFSGQVILPLAHTFEPEEFLEVIKLGNASNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFSDDSPLLPSGFRIIPIDSPLDTSSPNCTLDLASTLEAATPRSRISGVNGGGGGCAAAAASSSSKAVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQLSPVTPEAATLPRWICQSYRSVASQLLAMPVFTFANQSGLDMLETTLVALQDMTLEKGMACMEGGVCVSSVGRAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.448578 | 1.981977 | 1.144666 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0200300 | RBH | 0.085591 | 0.088068 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g10320 | RBH | 0.000000 | 0.078034 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0200300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0007350 | RBH | 0.134076 | 0.930655 | 0.881626 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0007000 | RBH | 0.185718 | 2.133307 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0006850 | RBH | 0.030096 | 0.086837 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0006990 | RBH | 4.141202 | 3.518785 | 1.690688 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0089600 | RBH | 1.102636 | 19.00789 | 0.7252435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0006930 | RBH | 0.000000 | 0.105289 | 0.104499 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0090100 | RBH | 5.548271 | 27.252576 | 2.0602665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0006770 | RBH | 0.028131 | 0.090861 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0006930 | RBH | 0.148519 | 6.284919 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0006960 | RBH | 0.000000 | 19.372675 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0006970 | RBH | 0.000000 | 0.000000 | 0.097347 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0006880 | RBH | 0.0 | 1.856813 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G006970 | RBH | 0.000000 | 0.301298 | 0.120205 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0006800 | RBH | 0.000000 | 5.781140 | 0.666741 |
