Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0003800 | OGI:01009440 | 5/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:3133165-3133632 | ||||||||
| Gene Symbol | PIT, Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, H2B, - | ||||||||||
| DNA seq | ctaagcggaggtgaacttggtcacagccttggtgccctcggagacagcgtgcttggcgagctcgccggggaggacgaggcggacggaggtctggatctcccgggaggtgatggtgggcttcttgttgtagcgcgcgagcttggcagactccccggcgagcttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggaggagatgccgatgtcggggtggacctgcttcagcaccttgaagatgtagatcttgtaggtctcgacgctcttcttcgccttcttcctcccggcgcggtccttcttcccctcgccggagcccttctcgcccttgccggcggggagccgcttctccgccttgggcttcttccccgccggggccttctcggccttctccgccgcgggctcctcctccgcgggcttcttcgcagccggcttcttctccgccttgggcgccat
More
|
||||||||||
| CDS seq | atggcgcccaaggcggagaagaagccggctgcgaagaagcccgcggaggaggagcccgcggcggagaaggccgagaaggccccggcggggaagaagcccaaggcggagaagcggctccccgccggcaagggcgagaagggctccggcgaggggaagaaggaccgcgccgggaggaagaaggcgaagaagagcgtcgagacctacaagatctacatcttcaaggtgctgaagcaggtccaccccgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgccggggagtctgccaagctcgcgcgctacaacaagaagcccaccatcacctcccgggagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgctgtctccgagggcaccaaggctgtgaccaagttcacctccgcttag
More
|
||||||||||
| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGEGKKDRAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA |
||||||||||
| Function | Histone H2B.5 [UniProtKB/Swiss-Prot:Q94JE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0003800 | OsCMeo_01g0003800.01 | Chr01 | 3133165 | 3133632 | - | NAM | ||
| CDS seq | atggcgcccaaggcggagaagaagccggctgcgaagaagcccgcggaggaggagcccgcggcggagaaggccgagaaggccccggcggggaagaagcccaaggcggagaagcggctccccgccggcaagggcgagaagggctccggcgaggggaagaaggaccgcgccgggaggaagaaggcgaagaagagcgtcgagacctacaagatctacatcttcaaggtgctgaagcaggtccaccccgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgccggggagtctgccaagctcgcgcgctacaacaagaagcccaccatcacctcccgggagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgctgtctccgagggcaccaaggctgtgaccaagttcacctccgcttag
More
|
|||||||
| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGEGKKDRAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 23.929455 | 6.445962 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0153300 | SBH | 21.718418 | 25.295584 | 31.417101 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g06010 | SBH | 12.025483 | 14.190207 | 6.615673 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0153300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003800 | RBH | 0.032707 | 21.063843 | 3.760300 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003710 | SBH | 1.936204 | 23.879440 | 16.737207 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003950 | RBH | 13.247163 | 62.351051 | 35.416683 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003540 | SBH | 1.850036 | 2.777321 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003800 | SBH | 56.018520 | 89.285072 | 44.342060 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0049600 | SBH | 125.694027 | 60.329605 | 83.124153 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003760 | SBH | 3.580211 | 4.413026 | 4.856151 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0050700 | SBH | 102.8166655 | 22.947628 | 351.632416 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003500 | SBH | 0.241118 | 1.128809 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003530 | RBH | 0.0 | 41.809238 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003670 | RBH | 3.233514 | 26.983957 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003790 | SBH | 3.491761 | 4.840545 | 5.358367 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003580 | RBH | 0.0 | 14.363519 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003740 | SBH | 0.519781 | 4.854779 | 3.090059 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003650 | SBH | 11.863730 | 73.201256 | 30.959246 |
