Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0002810 | OGI:01007030 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:2233111-2235082 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agagtgacgtgatccattcattcgttcgttcaccttgactgaccactgcaacttcgtttcctctccccttaaattccccttcactctcctcactccatccagctcaccaccagcagcagcatcagcagcaatgcagcctcccatcctcctcccgcttctcctcctcctcctcgccgccgcctcgccacggccggttctctcccgccgccacgcctcgccgccgctcgccaccgagacgctcgacgtcgccgcgtcgctgtcccgggcgcgggccgcggtgtccgcggaggccgtgccgctccaccagtccgccgccgccgccgtgtccacggaggtcgtcggggaggagcacgaggaggggcgcctggccctgcggctccactcccgggacttcttgccggaggagcaggggcggcagcggcacgccagctacaggtcactcgtgctggctcgcctccgccgcgactccgcccgcgccgccgcggtgtcggcccgcgcggcgatggcggcggacggggtgagtcggttcgacctggtgccggccaacgtcacggcgttcgaggcgtcggcggcggagatacagggccccgtggtgtccggggttgggctcggcagcggcgagtacttctcccgcgtcggcgtcggcagccccgcgcggcagctgtacatggtgctcgacaccggcagcgacgtcacctgggtgcaatgccagccgtgcgccgactgctaccagcagtccgacccggtgttcgacccttccctctccacctcctacgcctccgtcgcctgcgacaacccgcgctgccacgacctcgacgccgccgcctgccgcaactccaccggcgcctgcctctacgaggtcgcgtacggcgacggctcctacaccgtcggcgacttcgccaccgagacgctcacgctcggcgactccgccccggtctccagcgtcgccataggctgcggccacgacaacgaggggctgttcgtcggcgcggcggggctgcttgccctcggcggcgggccactctccttcccgtcccagatctccgccaccaccttctcctactgcctcgtcgaccgtgactccccctcctcgtcaaccctccagttcggcgacgccgccgacgcggaggtgacggcgccgctgatccgcagcccgcggacgagcacgttctactacgtgggcctctcgggcctctccgtcggtggccagatcctctccatcccaccctcggcgttcgccatggacagcacgggcgccggcggcgtcatcgtggactccggcacggcggtgacgcggctgcagtcgtcggcgtacgcggcgctgcgcgacgcgttcgtccggggcacccagtcgctgccgcgcacctccggcgtgtcgctgttcgacacgtgctacgacctgtcggaccggacgagcgtggaggtccccgcggtgtcgctgcggttcgccggcggcggcgagctccggctgccggcgaagaactacctgatcccggtggacggcgcggggacgtactgcctggcgttcgcgccgacgaacgcggcggtgtccatcatcgggaacgtgcagcagcaggggacccgcgtcagcttcgacacggccaagtccaccgtcggcttcacctccaacaagtgctaagtcattagcagcgatggcttaacttaattagccagatcaaggagtgattagtggtggtaaatggtaattaagcgcgagagtgtgtgatgtgggggtggggcccagtgccaggctctgtgggctttgggagagacgaaaggcgaggacaaatgccagcctgtcctgctctctgcttgtcgatggatgggggggcccactctcttcttctccggtgctttgctgtttcgtctttgatgtctcggcaaagacgaattaaaatgaatccattccaatctgttcatgtgttctatggccgcttttgtttgatgaaaacgtaagcttccaaaatttcca
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| CDS seq | atgcagcctcccatcctcctcccgcttctcctcctcctcctcgccgccgcctcgccacggccggttctctcccgccgccacgcctcgccgccgctcgccaccgagacgctcgacgtcgccgcgtcgctgtcccgggcgcgggccgcggtgtccgcggaggccgtgccgctccaccagtccgccgccgccgccgtgtccacggaggtcgtcggggaggagcacgaggaggggcgcctggccctgcggctccactcccgggacttcttgccggaggagcaggggcggcagcggcacgccagctacaggtcactcgtgctggctcgcctccgccgcgactccgcccgcgccgccgcggtgtcggcccgcgcggcgatggcggcggacggggtgagtcggttcgacctggtgccggccaacgtcacggcgttcgaggcgtcggcggcggagatacagggccccgtggtgtccggggttgggctcggcagcggcgagtacttctcccgcgtcggcgtcggcagccccgcgcggcagctgtacatggtgctcgacaccggcagcgacgtcacctgggtgcaatgccagccgtgcgccgactgctaccagcagtccgacccggtgttcgacccttccctctccacctcctacgcctccgtcgcctgcgacaacccgcgctgccacgacctcgacgccgccgcctgccgcaactccaccggcgcctgcctctacgaggtcgcgtacggcgacggctcctacaccgtcggcgacttcgccaccgagacgctcacgctcggcgactccgccccggtctccagcgtcgccataggctgcggccacgacaacgaggggctgttcgtcggcgcggcggggctgcttgccctcggcggcgggccactctccttcccgtcccagatctccgccaccaccttctcctactgcctcgtcgaccgtgactccccctcctcgtcaaccctccagttcggcgacgccgccgacgcggaggtgacggcgccgctgatccgcagcccgcggacgagcacgttctactacgtgggcctctcgggcctctccgtcggtggccagatcctctccatcccaccctcggcgttcgccatggacagcacgggcgccggcggcgtcatcgtggactccggcacggcggtgacgcggctgcagtcgtcggcgtacgcggcgctgcgcgacgcgttcgtccggggcacccagtcgctgccgcgcacctccggcgtgtcgctgttcgacacgtgctacgacctgtcggaccggacgagcgtggaggtccccgcggtgtcgctgcggttcgccggcggcggcgagctccggctgccggcgaagaactacctgatcccggtggacggcgcggggacgtactgcctggcgttcgcgccgacgaacgcggcggtgtccatcatcgggaacgtgcagcagcaggggacccgcgtcagcttcgacacggccaagtccaccgtcggcttcacctccaacaagtgctaa
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| Protein seq | MQPPILLPLLLLLLAAASPRPVLSRRHASPPLATETLDVAASLSRARAAVSAEAVPLHQSAAAAVSTEVVGEEHEEGRLALRLHSRDFLPEEQGRQRHASYRSLVLARLRRDSARAAAVSARAAMAADGVSRFDLVPANVTAFEASAAEIQGPVVSGVGLGSGEYFSRVGVGSPARQLYMVLDTGSDVTWVQCQPCADCYQQSDPVFDPSLSTSYASVACDNPRCHDLDAAACRNSTGACLYEVAYGDGSYTVGDFATETLTLGDSAPVSSVAIGCGHDNEGLFVGAAGLLALGGGPLSFPSQISATTFSYCLVDRDSPSSSTLQFGDAADAEVTAPLIRSPRTSTFYYVGLSGLSVGGQILSIPPSAFAMDSTGAGGVIVDSGTAVTRLQSSAYAALRDAFVRGTQSLPRTSGVSLFDTCYDLSDRTSVEVPAVSLRFAGGGELRLPAKNYLIPVDGAGTYCLAFAPTNAAVSIIGNVQQQGTRVSFDTAKSTVGFTSNKC |
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| Function | Protein ASPARTIC PROTEASE IN GUARD CELL 1 [UniProtKB/Swiss-Prot:Q9LS40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0002810 | OsCMeo_01g0002810.01 | Chr01 | 2233111 | 2235082 | + | NAM | ||
| CDS seq | atgcagcctcccatcctcctcccgcttctcctcctcctcctcgccgccgcctcgccacggccggttctctcccgccgccacgcctcgccgccgctcgccaccgagacgctcgacgtcgccgcgtcgctgtcccgggcgcgggccgcggtgtccgcggaggccgtgccgctccaccagtccgccgccgccgccgtgtccacggaggtcgtcggggaggagcacgaggaggggcgcctggccctgcggctccactcccgggacttcttgccggaggagcaggggcggcagcggcacgccagctacaggtcactcgtgctggctcgcctccgccgcgactccgcccgcgccgccgcggtgtcggcccgcgcggcgatggcggcggacggggtgagtcggttcgacctggtgccggccaacgtcacggcgttcgaggcgtcggcggcggagatacagggccccgtggtgtccggggttgggctcggcagcggcgagtacttctcccgcgtcggcgtcggcagccccgcgcggcagctgtacatggtgctcgacaccggcagcgacgtcacctgggtgcaatgccagccgtgcgccgactgctaccagcagtccgacccggtgttcgacccttccctctccacctcctacgcctccgtcgcctgcgacaacccgcgctgccacgacctcgacgccgccgcctgccgcaactccaccggcgcctgcctctacgaggtcgcgtacggcgacggctcctacaccgtcggcgacttcgccaccgagacgctcacgctcggcgactccgccccggtctccagcgtcgccataggctgcggccacgacaacgaggggctgttcgtcggcgcggcggggctgcttgccctcggcggcgggccactctccttcccgtcccagatctccgccaccaccttctcctactgcctcgtcgaccgtgactccccctcctcgtcaaccctccagttcggcgacgccgccgacgcggaggtgacggcgccgctgatccgcagcccgcggacgagcacgttctactacgtgggcctctcgggcctctccgtcggtggccagatcctctccatcccaccctcggcgttcgccatggacagcacgggcgccggcggcgtcatcgtggactccggcacggcggtgacgcggctgcagtcgtcggcgtacgcggcgctgcgcgacgcgttcgtccggggcacccagtcgctgccgcgcacctccggcgtgtcgctgttcgacacgtgctacgacctgtcggaccggacgagcgtggaggtccccgcggtgtcgctgcggttcgccggcggcggcgagctccggctgccggcgaagaactacctgatcccggtggacggcgcggggacgtactgcctggcgttcgcgccgacgaacgcggcggtgtccatcatcgggaacgtgcagcagcaggggacccgcgtcagcttcgacacggccaagtccaccgtcggcttcacctccaacaagtgctaa
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| Protein seq | MQPPILLPLLLLLLAAASPRPVLSRRHASPPLATETLDVAASLSRARAAVSAEAVPLHQSAAAAVSTEVVGEEHEEGRLALRLHSRDFLPEEQGRQRHASYRSLVLARLRRDSARAAAVSARAAMAADGVSRFDLVPANVTAFEASAAEIQGPVVSGVGLGSGEYFSRVGVGSPARQLYMVLDTGSDVTWVQCQPCADCYQQSDPVFDPSLSTSYASVACDNPRCHDLDAAACRNSTGACLYEVAYGDGSYTVGDFATETLTLGDSAPVSSVAIGCGHDNEGLFVGAAGLLALGGGPLSFPSQISATTFSYCLVDRDSPSSSTLQFGDAADAEVTAPLIRSPRTSTFYYVGLSGLSVGGQILSIPPSAFAMDSTGAGGVIVDSGTAVTRLQSSAYAALRDAFVRGTQSLPRTSGVSLFDTCYDLSDRTSVEVPAVSLRFAGGGELRLPAKNYLIPVDGAGTYCLAFAPTNAAVSIIGNVQQQGTRVSFDTAKSTVGFTSNKC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.130559 | 3.351936 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0140100 | RBH | 0.0 | 0.0 | 9.556934 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04710 | RBH | 0.0 | 0.0 | 2.293961 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0140100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002770 | RBH | 0.0 | 5.580299 | 1.178962 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002700 | RBH | 0.0 | 2.858600 | 0.782353 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002660 | RBH | 0.0 | 0.319188 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002760 | RBH | 0.0 | 8.683462 | 2.272541 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0037500 | RBH | 10.1063035 | 5.180681 | 7.4642695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002690 | RBH | 0.0 | 0.400608 | 0.533664 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0037800 | RBH | 10.6462955 | 0.872275 | 21.5843385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002580 | RBH | 0.0 | 0.119409 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002740 | RBH | 0.0 | 3.222437 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002780 | RBH | 0.0 | 3.371202 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002810 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002700 | RBH | 0.0 | 4.401216 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002880 | RBH | 0.0 | 1.306990 | 2.063517 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002720 | RBH | 0.0 | 0.0 | 1.886815 |
