Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_11g0024240 | OGI:11081470 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr11:29006782-29009711 | ||||||||
| Gene Symbol | JAMYB, OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21 | ||||||||||
| DNA seq | CGAAACGGATGGAGTATATAGTAAGGCATATATCAACATCCAAACACATATATATCTCCTCTGGTCCTCTTTGAACCCCTAGACATCTAGAAGGCAAAAACCCCTTCAGGGATCGAAAGAGGCAGCAAAAATAAAAGAAAAAAAACATTGAAGTTGGCAAAGAACTTAAGTGTCTCAACGTACAGTACATGACTTCTAAAGTTAAAACTAAAGAACTTTTTCTCTTTGCCTTCCTTGATGTCTCTCTCTCCCTATTCTATTTTACAAATATGTCCTTTGTAAATGTAAAATTTATTGCATCTTCCATATGTCCTCTAGACTCCATAGAGTTTCGGACAAACCCTCAGAAAAACCTTGCACCCAACCATTGAGCTGTTGGTCCTGAAACTGTTCATTATTAGGCTGAATCTCTGTAGACCAAAACTCATGGTCCACCTCCTGCATCCAGTCTCCAGCGTTCATCTTCTCATCATCACCATGCACATGTAAGTTAATCTTCTCCAAATCTTGTGACTCCGACGTGAACGAATCGGAAGATGAGCTAGTCACCATGCTCGGAGAGCCATCAAAACAATTAGCAACAGTGGCCATTGTTACACCAGATACACATGATAAGTCGTTGTTGCTGTAGTCTCCGCTATGATCAACAGCGCCAGCCCTGGCATGGATGCGCTCGGCAATGCGTGGCATCCACAGGTACTTCATAGCATCCTTGAACCTCTTGCTGTTGACATCACAATTGAGCTGCTTGGCATGCTTTTGCACTCTGGTCCTCCAGTAGTTCTTGATCTCGTTGTCGGTCCTCCCAGGCAGATGCTGTGCTATCTTGGACCACCTGTTTTTTTTCAACATTGACCAAATGAGAAACCCACACATCTAATTATGTTACCAAGGTGTGAACCAAAGTGCAAAAATGCTAAGAACAAAAAAAAGGAATTAAGATGGATGAGTGGACAGTGGACACAAACATACAAGTGTAGAAATGAGAAGAGAGGAGGCGTGCAAATTCCAAACTGGTGGTACAGCTTTCAGTGTCAGCGATGCATGCGTTTCTTTGTGCACAGGGGAATAAAATTAGCCGGTCATTGTTGGCTGATTAAAATTCTGAAAGTGTGTGAATTAGTGTGTCACGTCACGTACGTGCGTTTGTACATGGCAGGGATGAGTTGACATGTGTTGAGAGCGGCCAAGTCCACGTCACAAGTCTGTACGACCGTGACATGTCCTTCCTCTACTTTTAGCTTAGCTTAAGCTAGCGGCGTCTACACGAGTCTAATCTGCATCACGAGGCGTCAAATTAAGCTCCCAGCTAATTAATCTAAGCTAGTGATCTTCATTCTTCTCTACAGTGTAGGACACGTGTCGCCTTGAGGTTTGCTGGATGGTGAGCATGGTGGTTAATTAGCAGGTCTTAAGAAGGGATTTAGTTAATGACTACAATAAGTTAATGAAAGCTTCACTGAAGTCAGCCAATTACAATAGAACGATAGTGCCTCCGTTTTCTATAATATATTATGTTGTTCACTCTTACATCTACATCTTGTTTGAATTCGTCTTATTAAAAACTTTAAGTAAATAGTTTTTTCTATTTGATTCATCGATAAATGAACTTTAAGCATTACTTATATTTTCAAGATTTAAAAAAAAAGAAAAAAAGTTTAATAAGATGAATGATAAAAGGTTATAACAAGAATCAGTGAAGTTATATATTAAAAACACATAGGAGAGAGGAAGTAGCTGAGAACATTTCTGATCTCTGCATATATGAATACTAGATTCTATAAGATTAATTAATTAATTGATTATTACCGGTTGCCCCATCGGGAGTGGAGGTCGAGGATGAGCAGCTGCTCCTCTGCGGTGAAGTTGCCGCGCTTCACATCCGGCCGGAGATAGTTCAGCCACCGGAGCCGGCAGCTCTTCCCAGTCCTCTTCAGACCTATATATATATATATGCACAATTAAAATTTCATCAATCAATTAATCTCTCCACTATTAATCAGCATCCATCTCACAGTTGATTAATTGATTGATTCATTAGTTTGAGTAGTACGTGTTGTGATGGCTAGGTTACAATTAATCAACAGTTGTGTGAGAGATTGGTTAATTTGTGATAACTGTGCATGGCTATAGTGATTAATTATGTGGTCGGAGGCGCACATAGTTTTTGAAGACAAGTAGTGGAGGAAATGATTGGACTCGTGACTGACGTCGCCGGCTAAGCTGCACTGGAAAGGAAAATTCTGCCCTAGCTAACCTATTCTATAAACAGGTTGTTGGTTAAGTTTGCTGCTTAATTCTCCCAACCCAATTAATTATTAATCCCACTGCTCATGCATACTGTTCTACTCTATCTACTCCTACCTAGCTTCCTTTTTTTTTTGCTGGTAATTAAAGCTTAATTAAACTTACGTGTATATATCTAGCTTAGCTATATCTTGCGGATTGAGTAATTTTGATAATTTGAGTTAATCGAAGTTAATTAAGCAGCTAAGTAGCTAGTGTTTTCAACGAAGAGAACTTTTACGGTACAATTTACTGGCAGTATAGAAGGTATATATCGAAGCTTACCGGCGGCGCGTGCGAGTGCGTTCCAGCGGCCCTCGCCGTGATCAGAGATGTAATTGATGAGGGTGAGGTCCTCGTCGACGGTCCACGGCCCTCGCCGGAGCTCAGCCGACGACAGCTCCGCCGCCGCCTCCTGCTGCTCCCCGGGCACCGGGTGGTGGCTCGTCCTCTGCAGCACCATCTCCATCGTTTCGCTGATCTTGATTTGATCTTAGCTTACTATCGAATGAAATTGCCGATGATCGATCGATCTTCACGAGGAGGACTAGGAGATATGAACAAGTAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAAGATGCAAGTGTGCAGCT
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| CDS seq | ATGGAGATGGTGCTGCAGAGGACGAGCCACCACCCGGTGCCCGGGGAGCAGCAGGAGGCGGCGGCGGAGCTGTCGTCGGCTGAGCTCCGGCGAGGGCCGTGGACCAGGACTGGGAAGAGCTGCCGGCTCCGGTGGCTGAACTATCTCCGGCCGGATGTGAAGCGCGGCAACTTCACCGCAGAGGAGCAGCTGCTCATCCTCGACCTCCACTCCCGATGGGGCAACCGGTGGTCCAAGATAGCACAGCATCTGCCTGGGAGGACCGACAACGAGATCAAGAACTACTGGAGGACCAGAGTGCAAAAGCATGCCAAGCAGCTCAATTGTGATGTCAACAGCAAGAGGTTCAAGGATGCTATGAAGTACCTGTGGATGCCACGCATTGCCGAGCGCATCCATGCCAGGGCTGGCGCTGTTGATCATAGCGGAGACTACAGCAACAACGACTTATCATGTGTATCTGGTGTAACAATGGCCACTGTTGCTAATTGTTTTGATGGCTCTCCGAGCATGGTGACTAGCTCATCTTCCGATTCGTTCACGTCGGAGTCACAAGATTTGGAGAAGATTAACTTACATGTGCATGGTGATGATGAGAAGATGAACGCTGGAGACTGGATGCAGGAGGTGGACCATGAGTTTTGGTCTACAGAGATTCAGCCTAATAATGAACAGTTTCAGGACCAACAGCTCAATGGTTGGGTGCAAGGTTTTTCTGAGGGTTTGTCCGAAACTCTATGGAGTCTAGAGGACATATGGAAGATGCAATAA
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| Protein seq | MEMVLQRTSHHPVPGEQQEAAAELSSAELRRGPWTRTGKSCRLRWLNYLRPDVKRGNFTAEEQLLILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLNCDVNSKRFKDAMKYLWMPRIAERIHARAGAVDHSGDYSNNDLSCVSGVTMATVANCFDGSPSMVTSSSSDSFTSESQDLEKINLHVHGDDEKMNAGDWMQEVDHEFWSTEIQPNNEQFQDQQLNGWVQGFSEGLSETLWSLEDIWKMQ |
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| Function | Transcription factor JAMYB [UniProtKB/Swiss-Prot:Q2QZJ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_11g0024240 | OsAzu_11g0024240.01 | Chr11 | 29006914 | 29009536 | - | NAM | ||
| CDS seq | ATGGAGATGGTGCTGCAGAGGACGAGCCACCACCCGGTGCCCGGGGAGCAGCAGGAGGCGGCGGCGGAGCTGTCGTCGGCTGAGCTCCGGCGAGGGCCGTGGACCAGGACTGGGAAGAGCTGCCGGCTCCGGTGGCTGAACTATCTCCGGCCGGATGTGAAGCGCGGCAACTTCACCGCAGAGGAGCAGCTGCTCATCCTCGACCTCCACTCCCGATGGGGCAACCGGTGGTCCAAGATAGCACAGCATCTGCCTGGGAGGACCGACAACGAGATCAAGAACTACTGGAGGACCAGAGTGCAAAAGCATGCCAAGCAGCTCAATTGTGATGTCAACAGCAAGAGGTTCAAGGATGCTATGAAGTACCTGTGGATGCCACGCATTGCCGAGCGCATCCATGCCAGGGCTGGCGCTGTTGATCATAGCGGAGACTACAGCAACAACGACTTATCATGTGTATCTGGTGTAACAATGGCCACTGTTGCTAATTGTTTTGATGGCTCTCCGAGCATGGTGACTAGCTCATCTTCCGATTCGTTCACGTCGGAGTCACAAGATTTGGAGAAGATTAACTTACATGTGCATGGTGATGATGAGAAGATGAACGCTGGAGACTGGATGCAGGAGGTGGACCATGAGTTTTGGTCTACAGAGATTCAGCCTAATAATGAACAGTTTCAGGACCAACAGCTCAATGGTTGGGTGCAAGGTTTTTCTGAGGGTTTGTCCGAAACTCTATGGAGTCTAGAGGACATATGGAAGATGCAATAA
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| Protein seq | MEMVLQRTSHHPVPGEQQEAAAELSSAELRRGPWTRTGKSCRLRWLNYLRPDVKRGNFTAEEQLLILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLNCDVNSKRFKDAMKYLWMPRIAERIHARAGAVDHSGDYSNNDLSCVSGVTMATVANCFDGSPSMVTSSSSDSFTSESQDLEKINLHVHGDDEKMNAGDWMQEVDHEFWSTEIQPNNEQFQDQQLNGWVQGFSEGLSETLWSLEDIWKMQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_11g0024240 | OsAzu_11g0024240.02 | Chr11 | 29006782 | 29009711 | - | IsoSeq | ||
| CDS seq | AGCTGCACACTTGCATCTTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTACTTGTTCATATCTCCTAGTCCTCCTCGTGAAGATCGATCGATCATCGGCAATTTCATTCGATAGTAAGCTAAGATCAAATCAAGATCAGCGAAACGATGGAGATGGTGCTGCAGAGGACGAGCCACCACCCGGTGCCCGGGGAGCAGCAGGAGGCGGCGGCGGAGCTGTCGTC
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| Protein seq | SCTLASSLLSLSLSLSLSSSSSSSSSTCSYLLVLLVKIDRSSAISFDSKLRSNQDQRNDGDGAAEDEPPPGARGAAGGGGGAVV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.143486 | 12.731890 | 12.051703 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0684000 | RBH | 1.378701 | 0.533388 | 14.232843 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45740 | RBH | 0.932350 | 0.358748 | 3.663811 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0684000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024730 | RBH | 0.281902 | 20.267368 | 1.921913 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024200 | RBH | 0.0 | 2.438562 | 6.262711 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023740 | RBH | 0.485191 | 8.385913 | 16.570793 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023580 | RBH | 0.153109 | 0.154192 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024050 | RBH | 0.917472 | 4.960453 | 23.629795 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0437400 | RBH | 1.9180975 | 9.0703995 | 15.044556 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024440 | RBH | 0.0 | 0.682279 | 5.191308 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0435900 | RBH | 11.854611 | 30.007803 | 0.516152 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024270 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024300 | RBH | 0.196130 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023730 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023580 | RBH | 0.978040 | 0.0 | 2.397848 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023960 | RBH | 0.0 | 1.491040 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023950 | RBH | 0.103948 | 0.000000 | 6.185935 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024150 | RBH | 0.000000 | 3.003834 | 16.485039 |
