Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_11g0021540 | OGI:11072300 | 12/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr11:25861007-25865834 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAAGCAAAAAAAAATCCAGCCTTTTAGATTCTCATAGTCTGGCTACCGACCAACAAATTCTCGTAACCTTAAACTTTCTAAACAAGACGGTAAACTAGTTTCAAAGCAAGGCTTTGCTTTTTTCTAAAGAAAAAAAAAGGAAAGAAAATTGAGAAACAATTAAACAACACAAAGTTATTACGATTATTTGATACAAATGATATCCCATGGTAAGTGAAAGTACAAGCAAGAAATAACATACGCGACAACTTGACGATCGACCGAATGTCTGCAAATAACAAACCAGTAAACAGTCGACGATCGACCGAATGTCTGCAAATAACAAACCAGTAAAAGTTTATATAGGCTCGTAGCAATAGAATCCGTGCTAGCTCCTGCCTTCTTGATGATGTGACAAGCTGTTCATAGACATGTAGAGTTCGTAAGGAACAATTCACAGTTTGCAAGTACATATATAGGTACAAAGATACAGCAATCGATAGGTAGGCATATGAATACAGAATACATAAGATTTTATTTATACCTTGTGTAATGCTTATGCCTGTGAACTGTGATATCATGGCCTCATGGGGCGTCCAGCTGGCTGCTACTAGCTGGCATTTCGTTTCTCTCTGGATAGCCATAACTGTGGAAAGTATAGGTCCCTGACGGATATGATTCTCTCCTGGTCATGGATACTGTTCAGCTGACTTATTTTTACCACATGGAGAACTTGAAGACTTCCCAACGAACCATTTGGAATCTCAAGTTCATCCACTCCATCAATTTCATGTAGTAAAAGTGTCCTCAAGTTGGCAAAACTGTTAATTGCTTGAAATACCAGCTTGGAGATGCCACTGATATTATGGAGGCGGAGCGATTCAAGGTTACACAAATTTGTAGATAGTAGGACGAGCGAATCATCCCTTAGCTTGCACAAGCTTAACTCCAGAACTTTAATCTGTTTAGATTTGAAAATAGGATATTGGAATGTCTGCTCAGCCAACCCGCCCCTGATAACAAGTTTTTCAAGACTAGTAGGATTCAGGGTTTCAAAGTCAAGAGACTCCTCGTCCACACGACTTGCACTGACATGCAAACTAGAAAGACAGGAAAGCTTCGACAATGAAGAAAACAATGTTTTGCTGGATCGGCCTTCTCCAATAACAACAGATAGAGTAGTTAACTGGGTCAGCTTCTCCACATGCTTCTCAAAGGTATCACTTGCCTGCACTGTCTCGAGAGTCCGCAATTCTTTCAGGTAGTTCACAGTTTTCGGGGCTTTCACAGCTCGGTATATGTCTGGGCCTTGGCCATCCAATGTGTCAGCAGAAAGATGCCTCAATCTTATGAGTTTGCCTATCCAACTTGGCAGTTCATTTATTCTGCTCCCCCTGAGGTCCAAAGTTTGCAGGTTGTAGAGATTGGCCATGGAAGATGGAAGGCATCGTATTTGTGATTTTCGCAAGCCAAGATATCGCAAATTAAACAGCTGGTAGCCAATACCTCTGGGCAATTCTTCAAGTGGAGATTCTTGCAGTTTCAGAACAGTAAGATACTTAAGTTTGGCTGTCAGTGATGCCGGTAAGGACTTCAAATTTGCAGCAGCATTTCTGCTGGCCATAAGAGTCCGAAGGTACGGAAAATCTACTAATGCACCAATATCTTCAGGGTTTTCCGAGATAAATAGGCAGCGGACATTGGTATCCATCTCTGCTAGTTTACCACCATGGCAGATAGCTCCAAATTCTTCCTTTTGAGAGATAGATACAGCCAGCTCATGCACCACAATAGGCATCCTGCAACTTGCTACTCTACCTTGTTCGTCCACATCTACAACCTGCAGAAATCCCCAGTGGATTAGCTCCTTTATATAGCGCTCACCAATTTCCTCCACTTGCAATGATCCCTGGTTCTCGATGAAACCCTCTGCAGCCCATAACCGGACAAGACTCTCAGGCAACAGGAGAAAACCAGCCGGAAAAGTACTACAATACAAAAGGCAGTTCTTGAGATGCATTGGAAGGTTCTTGTAACTGAGATATAGTACTTTTTGCACATTGTTCAGGCTTGACTTGCTTTTTTGAATATCTTCAATTTGTTGAGCCATTTCACTCCAGACTGACTCTGTTTTTTGCTTTGAGCTGAGCAATGCTCCAATAGAAACAATTGCTTGGGGAAGAAAATTGCACAAGCCAATAATCTTCAAAGTTACTTCACGGAGTTCTATAGGGCAGTCACTTGGTCTTCCAAAAGCCTTTGTACAGAAGATATCAAAACTGTCATTAGGATGTAAACAAGTAAGCTTCATGAATTCCTTGGGGACTCTCGCCGAGGGTCTTACAGGTTCCAGCGAACTAGATGGTGTTTGGGACTGTGACTCCACTGAAGATTCACTTCTTACAAAAGCAACCTCTGGCATCCGAGCGATTATGATTATCCGGCTGCCCATTTTATTATCAGAAGCTGCACGGTGTACCTTGTGAACCATGTCTGGCACCCATACATCGTCAAATACAAACAGGAACTTGCTATCCTGATTTTCCGTCATTACTCTCAGTGAGGTACTCTCAGTGGAAGTGCCAACTTGCCTTCCTAGTTCTTCCATCATCATTCTTTTCAAAGCATCAGTGTCAGCATTGGGACATTGAGCAATGGAAATCCACGCAGAAGTACTGAAATACTTCTTCTCACTAGCATAAACATCCTTAACAAGATGGGTTTTCCCTGACCCAGGCTGACCATACACTGCAATCACAGAAAGAGCTCCATCTTTCGTCATATCTTTACTCTTTAGCGATTCAATCAGTTCTTCCTTTCTTTCGGCATATCGCTTAGTATCTATGTTGTTGACATGAGGACCAAACATTGATGATGAAGAAGCTAATGAGGTTTCCTTGTCCACTTGAACCCATCGTTTTTTCATTTTGGAAAGATGCTCCAGCTCCACCTCAATTTCTTTCAGCTGAGCAGTGAAGCGATGTGAGGCCAGTATAACCTGTACTCTCTTGGTAAGTCGATATTGTTTGCTCTGTACAATATAGACAATATATTCGTCCATTATTTGTTCAACAAGGCATCCTAGTTTCCGTGCTTCCCCAATCCAACTTTGAAGTACTTGCTTGTTATCATATCTTGTTTCTATTTGAGCCAGGAAGCAAAGGATCATGCGAAGTTCACTTTCTATTCGCCTCAATCTACCTTGAAGTTCTGCTTGCCTAAGAACTAATATATCATTACTATTAATAATCTCAGATATTACTCTGGTAAGAGATCTAATTAGAAAGGATCCTCCTTCAAGGCCATGTTCCAAAGCTGATCTTCCTTCAAGGTCATGTTCCAAAGCAGTAGCACTTCTCTCTCGTCCTAGGGCAATTCCTATTTTTCTGAGAGCTAGGTATATTGCAGTTTCTGCCATTTGCCTTCTATCCCTTAATCTTTTGACATTAAATGGTTCGTGAAACCAAAAAGGATGCTTCCACTACAGTTTGGAGTACAATACACTGAGTGTCACATTTCCTCCCTCCCTTTTTATCCTGCATGCAACACATAGTTTGGGGTACATGTTCTTTTCAGTTTCAAAAAAAGAAGAAAAAAATTCAGTAGGAGATAATCTAAAGTAATGAAAGAAACAACCTTTCTTGAAAGGACATTGGGCTACGCAATGTGAAAAACAATGACCATAAGATGAATGTTTCGATGAAAGATGGACATCTGATCATTAACATACATGCGGTAAAAAAAAAAATGCACTAGACACTTCCCTCCCGATCCTTCGAGTGTCTCCCCTCAGACATGTGGCAAGCAAGAAAAAGATTACTCCATGAAAAATAGATAATGGGCTATTGGTTTGCATGGCAATTAATTGGCATACTTTAATGGGCTGCACTAATTAAGATCAATTTTGAGATGTCAAATAAGTAAAATAAACATGAACGGTTGTTGTGAAGAAAAATAGGAATACATATTACGGTAGTACTGTATGTAACTTACGGGCTACTTCAGTTGTAACAATCAGGAAAAAATACCACTATAACTACAAGGAAAAAAAACAATCTTAAGATCTTTCAACAAAGATGGCATCTCATAGTCGCGCGAACACGCGACTCCGAGAGGCTAATCTCTATGTGAAATCTAAAAGTAAGTTATAAAACAATTATCAACTAGCCAACAGAAGGGCAGTCTTTTTATGACTGATACAATAGACTTACAAAGAATGACATCAGAATTCTCACTTGGGAAAAAAATGATAAAAGTACGCTGTTTAAAATGTGGTAGCTATTAGATGATCCATCTATTACATTATAGGGATTTGCTATTCATAACTCAACTGAAATTTTTTTGCAAGAAAAATCAGATTCCTAACCTTTGGATCCGGCAGAGATTCGTGCTCCGGCGAGATTCTTGACTCTGGCGGCCGTGCAACAACGGCAAGAGCGCCGGATTAGGTTTCAGGTGGGGTTGGGGTTAGGGAAGGGGGATTTTGGGGAGAGGGTGGATCCCCGGGTTTAGCGGGAGGCCAGCGAGGCGGCTGACCGGCGGTGCGTGGAGGCGCCGCCGGAGCCGCGGGCTGGAAGCAGGCGGTGGGCGGAGTAGGCAGCGGGGGCAACGAGAAGTCGAGTGGTTAGGAGGCGGCGGCCGGATCCGGCGGCGCTATGCTGCGGAGACAGGGGAGGGTCGGCGGCGCGGAGGCATCTTGCCGGAACTGTAGGAGACGACGACCGGCTTCGAGCGATAAGAAAATCAATAGGGAGGACGGAGGAGGTAGCCAGTGGCGGCGGCGGCGTCTTCGAGGCAGCTGCTGCGGCGCGTGTGGCGACTTGCTACTCGCGAGCGAACAGACGAGGG
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| CDS seq | ATGACGAAAGATGGAGCTCTTTCTGTGATTGCAGTGTATGGTCAGCCTGGGTCAGGGAAAACCCATCTTGTTAAGGATGTTTATGCTAGTGAGAAGAAGTATTTCAGTACTTCTGCGTGGATTTCCATTGCTCAATGTCCCAATGCTGACACTGATGCTTTGAAAAGAATGATGATGGAAGAACTAGGAAGGCAAGTTGGCACTTCCACTGAGAGTACCTCACTGAGAGTAATGACGGAAAATCAGGATAGCAAGTTCCTGTTTGTATTTGACGATGTATGGGTGCCAGACATGGTTCACAAGAGTCTTGTCCGGTTATGGGCTGCAGAGGGTTTCATCGAGAACCAGGGATCATTGCAAGTGGAGGAAATTGGTGAGCGCTATATAAAGGAGCTAATCCACTGGGGATTTCTGCAGGTTGTAGATGTGGACGAACAAGGTAGAGTAGCAAGTTGCAGGATGCCTATTGTGGTGCATGAGCTGGCTGTATCTATCTCTCAAAAGGAAGAATTTGGAGCTATCTGCCATGGTGGTAAACTAGCAGAGATGGATACCAATGTCCGCTGCCTATTTATCTCGGAAAACCCTGAAGATATTGGTGCATTAGTAGATTTTCCGTACCTTCGGACTCTTATGGCCAGCAGAAATGCTGCTGCAAATTTGAAGTCCTTACCGGCATCACTGACAGCCAAACTTAAGTATCTTACTGTTCTGAAACTGCAAGAATCTCCACTTGAAGAATTGCCCAGAGGTATTGGCTACCAGCTGTTTAATTTGCGATATCTTGGCTTGCGAAAATCACAAATACGATGCCTTCCATCTTCCATGGCCAATCTCTACAACCTGCAAACTTTGGACCTCAGGGGGAGCAGAATAAATGAACTGCCAAGTTGGATAGGCAAACTCATAAGATTGAGGCATCTTTCTGCTGACACATTGGATGGCCAAGGCCCAGACATATACCGAGCTGTGAAAGCCCCGAAAACTGTGAACTACCTGAAAGAATTGCGGACTCTCGAGACAGTGCAGGCAAGTGATACCTTTGAGAAGCATGTGGAGAAGCTGACCCAGTTAACTACTCTATCTGTTGTTATTGGAGAAGGCCGATCCAGCAAAACATTGTTTTCTTCATTGTCGAAGCTTTCCTGTCTTTCTAGTTTGCATGTCAGTGCAAGTCGTGTGGACGAGGAGTCTCTTGACTTTGAAACCCTGAATCCTACTAGTCTTGAAAAACTTGTTATCAGGGGCGGGTTGGCTGAGCAGACATTCCAATATCCTATTTTCAAATCTAAACAGATTAAAGTTCTGGAGTTAAGCTTGTGCAAGCTAAGGGATGATTCGCTCGTCCTACTATCTACAAATTTGTGTAACCTTGAATCGCTCCGCCTCCATAATATCAGTGGCATCTCCAAGCTGGTATTTCAAGCAATTAACAGTTTTGCCAACTTGAGGACACTTTTACTACATGAAATTGATGGAGTGGATGAACTTGAGATTCCAAATGGTTCGTTGGGAAGTCTTCAAGTTCTCCATGTGGTAAAAATAAGTCAGCTGAACAGTATCCATGACCAGGAGAGAATCATATCCGTCAGGGACCTATACTTTCCACAGTTATGGCTATCCAGAGAGAAACGAAATGCCAGCTAG
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| Protein seq | MTKDGALSVIAVYGQPGSGKTHLVKDVYASEKKYFSTSAWISIAQCPNADTDALKRMMMEELGRQVGTSTESTSLRVMTENQDSKFLFVFDDVWVPDMVHKSLVRLWAAEGFIENQGSLQVEEIGERYIKELIHWGFLQVVDVDEQGRVASCRMPIVVHELAVSISQKEEFGAICHGGKLAEMDTNVRCLFISENPEDIGALVDFPYLRTLMASRNAAANLKSLPASLTAKLKYLTVLKLQESPLEELPRGIGYQLFNLRYLGLRKSQIRCLPSSMANLYNLQTLDLRGSRINELPSWIGKLIRLRHLSADTLDGQGPDIYRAVKAPKTVNYLKELRTLETVQASDTFEKHVEKLTQLTTLSVVIGEGRSSKTLFSSLSKLSCLSSLHVSASRVDEESLDFETLNPTSLEKLVIRGGLAEQTFQYPIFKSKQIKVLELSLCKLRDDSLVLLSTNLCNLESLRLHNISGISKLVFQAINSFANLRTLLLHEIDGVDELEIPNGSLGSLQVLHVVKISQLNSIHDQERIISVRDLYFPQLWLSREKRNAS |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_11g0021540 | OsAzu_11g0021540.01 | Chr11 | 25861152 | 25863768 | - | NAM | ||
| CDS seq | ATGACGAAAGATGGAGCTCTTTCTGTGATTGCAGTGTATGGTCAGCCTGGGTCAGGGAAAACCCATCTTGTTAAGGATGTTTATGCTAGTGAGAAGAAGTATTTCAGTACTTCTGCGTGGATTTCCATTGCTCAATGTCCCAATGCTGACACTGATGCTTTGAAAAGAATGATGATGGAAGAACTAGGAAGGCAAGTTGGCACTTCCACTGAGAGTACCTCACTGAGAGTAATGACGGAAAATCAGGATAGCAAGTTCCTGTTTGTATTTGACGATGTATGGGTGCCAGACATGGTTCACAAGAGTCTTGTCCGGTTATGGGCTGCAGAGGGTTTCATCGAGAACCAGGGATCATTGCAAGTGGAGGAAATTGGTGAGCGCTATATAAAGGAGCTAATCCACTGGGGATTTCTGCAGGTTGTAGATGTGGACGAACAAGGTAGAGTAGCAAGTTGCAGGATGCCTATTGTGGTGCATGAGCTGGCTGTATCTATCTCTCAAAAGGAAGAATTTGGAGCTATCTGCCATGGTGGTAAACTAGCAGAGATGGATACCAATGTCCGCTGCCTATTTATCTCGGAAAACCCTGAAGATATTGGTGCATTAGTAGATTTTCCGTACCTTCGGACTCTTATGGCCAGCAGAAATGCTGCTGCAAATTTGAAGTCCTTACCGGCATCACTGACAGCCAAACTTAAGTATCTTACTGTTCTGAAACTGCAAGAATCTCCACTTGAAGAATTGCCCAGAGGTATTGGCTACCAGCTGTTTAATTTGCGATATCTTGGCTTGCGAAAATCACAAATACGATGCCTTCCATCTTCCATGGCCAATCTCTACAACCTGCAAACTTTGGACCTCAGGGGGAGCAGAATAAATGAACTGCCAAGTTGGATAGGCAAACTCATAAGATTGAGGCATCTTTCTGCTGACACATTGGATGGCCAAGGCCCAGACATATACCGAGCTGTGAAAGCCCCGAAAACTGTGAACTACCTGAAAGAATTGCGGACTCTCGAGACAGTGCAGGCAAGTGATACCTTTGAGAAGCATGTGGAGAAGCTGACCCAGTTAACTACTCTATCTGTTGTTATTGGAGAAGGCCGATCCAGCAAAACATTGTTTTCTTCATTGTCGAAGCTTTCCTGTCTTTCTAGTTTGCATGTCAGTGCAAGTCGTGTGGACGAGGAGTCTCTTGACTTTGAAACCCTGAATCCTACTAGTCTTGAAAAACTTGTTATCAGGGGCGGGTTGGCTGAGCAGACATTCCAATATCCTATTTTCAAATCTAAACAGATTAAAGTTCTGGAGTTAAGCTTGTGCAAGCTAAGGGATGATTCGCTCGTCCTACTATCTACAAATTTGTGTAACCTTGAATCGCTCCGCCTCCATAATATCAGTGGCATCTCCAAGCTGGTATTTCAAGCAATTAACAGTTTTGCCAACTTGAGGACACTTTTACTACATGAAATTGATGGAGTGGATGAACTTGAGATTCCAAATGGTTCGTTGGGAAGTCTTCAAGTTCTCCATGTGGTAAAAATAAGTCAGCTGAACAGTATCCATGACCAGGAGAGAATCATATCCGTCAGGGACCTATACTTTCCACAGTTATGGCTATCCAGAGAGAAACGAAATGCCAGCTAG
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| Protein seq | MTKDGALSVIAVYGQPGSGKTHLVKDVYASEKKYFSTSAWISIAQCPNADTDALKRMMMEELGRQVGTSTESTSLRVMTENQDSKFLFVFDDVWVPDMVHKSLVRLWAAEGFIENQGSLQVEEIGERYIKELIHWGFLQVVDVDEQGRVASCRMPIVVHELAVSISQKEEFGAICHGGKLAEMDTNVRCLFISENPEDIGALVDFPYLRTLMASRNAAANLKSLPASLTAKLKYLTVLKLQESPLEELPRGIGYQLFNLRYLGLRKSQIRCLPSSMANLYNLQTLDLRGSRINELPSWIGKLIRLRHLSADTLDGQGPDIYRAVKAPKTVNYLKELRTLETVQASDTFEKHVEKLTQLTTLSVVIGEGRSSKTLFSSLSKLSCLSSLHVSASRVDEESLDFETLNPTSLEKLVIRGGLAEQTFQYPIFKSKQIKVLELSLCKLRDDSLVLLSTNLCNLESLRLHNISGISKLVFQAINSFANLRTLLLHEIDGVDELEIPNGSLGSLQVLHVVKISQLNSIHDQERIISVRDLYFPQLWLSREKRNAS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_11g0021540 | OsAzu_11g0021540.02 | Chr11 | 25861007 | 25865834 | - | IsoSeq | ||
| CDS seq | ATGGCTATCCAGAGAGAAACGAAATGCCAGCTAGTAGCAGCCAGCTGGACGCCCCATGAGGCCATGATATCACAGTTCACAGGCATAAGCATTACACAAGCTTGTCACATCATCAAGAAGGCAGGAGCTAGCACGGATTCTATTGCTACGAGCCTATATAAACTTTTACTGGTTTGTTATTTGCAGACATTCGGTCGATCGTCGACTGTTTACTGGTTTGTTATTTGCAGACATTCGGTCGATCGTCAAGTTGTCGCGTATGTTATTTCTTGCTTGTACTTTCACTTACCATGGGATATCATTTGTATC
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| Protein seq | MAIQRETKCQLVAASWTPHEAMISQFTGISITQACHIIKKAGASTDSIATSLYKLLLVCYLQTFGRSSTVYWFVICRHSVDRQVVAYVISCLYFHLPWDIICI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.392085 | 13.544180 | 5.142431 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0639600 | RBH | 1.297393 | 1.511378 | 4.152011 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g42040 | RBH | 0.876685 | 0.945100 | 1.067980 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0639600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022040 | SBH | 0.592494 | 10.638247 | 3.385752 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008040 | SBH | 0.198904 | 6.296239 | 0.434316 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007910 | SBH | 2.060827 | 18.695328 | 1.356757 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020850 | RBH | 0.057666 | 0.424999 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007930 | SBH | 11.121528 | 1.201072 | 13.343512 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0381300 | RBH | 3.5812905 | 17.2277645 | 6.821674 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021910 | RBH | 0.259685 | 1.729620 | 1.018335 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0401300 | RBH | 3.2593755 | 17.5508705 | 7.859101 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0021750 | RBH | 0.280064 | 0.188764 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021840 | RBH | 0.429510 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021490 | RBH | 1.868438 | 37.689095 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021100 | RBH | 0.671300 | 0.0 | 0.872113 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021260 | RBH | 0.167631 | 1.383716 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023760 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
