Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_11g0006040 | OGI:11014630 | 15/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr11:4774639-4776784 | ||||||||
| Gene Symbol | PME31, OsPME31, - | ||||||||||
| DNA seq | ATATATAATACAAGTGCAAGAGCACATGGCTAATGCATCTTTATTTATTTATATATACACAAACCATGGATGTACGTACCAACAAATACAATATAAGGTACGAGTACGTACGGTACGTATGCAAATAGTAGAGTATATAGTTACACACATACAGTACAAGGGACATTGATACAGTACAATACAATACTCCAGTACACAGCATGTGATATATGTATGCAATGATGGTGTAAGAGTGTAACTAGATGAGACCGTGGGTGTAGTTGATCTGCTCGCCGTTGACCAAGTTGGGCAACCACTGGTTACCGTTGATGAAGTGATCAACGGTGAAACGGTTGGCCTCCGCCTCGGTGATCACCCGGACGCCCTTCCACTTCACACGGTCGGCCGTCTCTGCCCCAGCGCCTTTGTTGCCATACTCCAGGTACTCCACTGTCCTGGTCGTCTCCTCCACAGGTGTTGCCTTGTTCCAGTGAACCCAGCCGTCAGGGTTGATGATGTCGCTCATGAAACAGCCCATGAAAACCACCCTGGAATGGTTCTTCCAGGGCCTCCCCAGATAGGTATCCACCCCCGCGAGGCTTTCTCCTTCCATGGCGGTGATGTTGCAACCTTGGAATACAAACCCCGACTCCTCGCTGGTTGGGTCGTTGCGCCCCTGCGCCGTGATTGCGTTGTGCTTGCCGTTGCCCGGGTTGCGCACCAGTAAGCGGCAATACTGGAAAATGGCCTTCGCATTACCGTACACAAAATCAATTGTGCCGGCGATGTCGCACCGCAGATACACCTGCAGGTTGTTTTGGGCCCAAAGTGTGTCTTGGTACCCGTCGATGCGGCAGCGGTGAATAAGGGACATGTTGGAGTCGCAGCGCAGAGCGACGGCTGGAGTACCGGTCGGACCCGCCTTGTTCTCTATTGTCACGTCCTGAGCTATAAATCCATGCCCTTGCACAGCTACATACACATATACATATATACAGACAGGCACGCGCATGCAAAATTAGTATAGTAATAAATAAAATTACCAAATTAAGTCGATCGATCTCTTTATACTCCTAGCTAGCTTTTCAATTAGCTGATCGATTTGATTCGATACATATACTAGCTAGCTAGTAGATCGAGTCGCCAAACGCATAAATTCTTTTTATTTTAATCTTGTATATATGTTATATAATTATTTTTTTCTCCTTCCATTCCAAAATAAAATGTTATTAGGTGCTTTTTTTATGGAAGTAAAACAATTGGAATATTTAACAAATCACCAAGCTAATAATATCTTTTAATGCCATGCATGTCTATCATTATATATATGTTAATATTTGAAAATATATAGTTTAGTAATGTATGATGTGTTGATATTATAACCCTTTATTAATTAATATATGTTTTCTTAAGAAAAAACGATCACATATACCATATGTGTAAAAAACATATAGGAGCCCTTGTAATTTGGGACGGTGGGTGTGAATTATACTAGTCCGTAGCTTAGACCTAAGCTTTATTAACATATAGGAGCATATATATATATAGATTAAAATAAAAGTCTACGCTAGCTAATTCGTCTACGGTCTACCAGTGGCGGGATGATACCAAAATGAGTATGCAGTTGAGTATGTATATAAAGGAGTAGTATATATGCACTTACTGACTGTGGCCGTCCAAGGCATCATGTCGGTCTTGGTCTTATTATTTTCTATGGGGCAAGAGCGGCTTCCAGTAATCACGGTTTTGCCGATGCCCTCTCCCCAAAGCACAACATTTGGTCTGGTAATATTTACCGTTTCCTCGTAAACCCCTGCTTTCACAAAGATGCCGAACCTGCCTCTCGGCGGCGCTGCGCCCAAGGCTTGGGTGATCGTCGTGAAATTGGCCGTGCCGTCCTTCGCTACGACCACGGTCTTCCTCATCCGCTTGCCGTCCACCATCCCATCGATGAGCAGGAGCCTCCTCCGTACCCAGCGGTCGTCGGTGCTGACGACCGTCGCGTCGCCGAGAATGCTCGACGACGACGACCGTACAGCCGCAGCAACGATCAACAAATTAAAACCATATATCATCATCATATTGCTCCTCCTTTCAGCCATTGTACTAGCTAGTTTTTGTGTGTGCGACCGATCGATTCACTTGGTTTTTGCCTGCTCGATCAATT
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| CDS seq | ATGGCTGAAAGGAGGAGCAATATGATGATGATATATGGTTTTAATTTGTTGATCGTTGCTGCGGCTGTACGGTCGTCGTCGTCGAGCATTCTCGGCGACGCGACGGTCGTCAGCACCGACGACCGCTGGGTACGGAGGAGGCTCCTGCTCATCGATGGGATGGTGGACGGCAAGCGGATGAGGAAGACCGTGGTCGTAGCGAAGGACGGCACGGCCAATTTCACGACGATCACCCAAGCCTTGGGCGCAGCGCCGCCGAGAGGCAGGTTCGGCATCTTTGTGAAAGCAGGGGTTTACGAGGAAACGGTAAATATTACCAGACCAAATGTTGTGCTTTGGGGAGAGGGCATCGGCAAAACCGTGATTACTGGAAGCCGCTCTTGCCCCATAGAAAATAATAAGACCAAGACCGACATGATGCCTTGGACGGCCACAGTCACTGTGCAAGGGCATGGATTTATAGCTCAGGACGTGACAATAGAGAACAAGGCGGGTCCGACCGGTACTCCAGCCGTCGCTCTGCGCTGCGACTCCAACATGTCCCTTATTCACCGCTGCCGCATCGACGGGTACCAAGACACACTTTGGGCCCAAAACAACCTGCAGGTGTATCTGCGGTGCGACATCGCCGGCACAATTGATTTTGTGTACGGTAATGCGAAGGCCATTTTCCAGTATTGCCGCTTACTGGTGCGCAACCCGGGCAACGGCAAGCACAACGCAATCACGGCGCAGGGGCGCAACGACCCAACCAGCGAGGAGTCGGGGTTTGTATTCCAAGGTTGCAACATCACCGCCATGGAAGGAGAAAGCCTCGCGGGGGTGGATACCTATCTGGGGAGGCCCTGGAAGAACCATTCCAGGGTGGTTTTCATGGGCTGTTTCATGAGCGACATCATCAACCCTGACGGCTGGGTTCACTGGAACAAGGCAACACCTGTGGAGGAGACGACCAGGACAGTGGAGTACCTGGAGTATGGCAACAAAGGCGCTGGGGCAGAGACGGCCGACCGTGTGAAGTGGAAGGGCGTCCGGGTGATCACCGAGGCGGAGGCCAACCGTTTCACCGTTGATCACTTCATCAACGGTAACCAGTGGTTGCCCAACTTGGTCAACGGCGAGCAGATCAACTACACCCACGGTCTCATCTAG
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| Protein seq | MAERRSNMMMIYGFNLLIVAAAVRSSSSSILGDATVVSTDDRWVRRRLLLIDGMVDGKRMRKTVVVAKDGTANFTTITQALGAAPPRGRFGIFVKAGVYEETVNITRPNVVLWGEGIGKTVITGSRSCPIENNKTKTDMMPWTATVTVQGHGFIAQDVTIENKAGPTGTPAVALRCDSNMSLIHRCRIDGYQDTLWAQNNLQVYLRCDIAGTIDFVYGNAKAIFQYCRLLVRNPGNGKHNAITAQGRNDPTSEESGFVFQGCNITAMEGESLAGVDTYLGRPWKNHSRVVFMGCFMSDIINPDGWVHWNKATPVEETTRTVEYLEYGNKGAGAETADRVKWKGVRVITEAEANRFTVDHFINGNQWLPNLVNGEQINYTHGLI |
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| Function | Pectinesterase 2 [UniProtKB/Swiss-Prot:O04887] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_11g0006040 | OsAzu_11g0006040.01 | Chr11 | 4774877 | 4776719 | - | NAM | ||
| CDS seq | ATGGCTGAAAGGAGGAGCAATATGATGATGATATATGGTTTTAATTTGTTGATCGTTGCTGCGGCTGTACGGTCGTCGTCGTCGAGCATTCTCGGCGACGCGACGGTCGTCAGCACCGACGACCGCTGGGTACGGAGGAGGCTCCTGCTCATCGATGGGATGGTGGACGGCAAGCGGATGAGGAAGACCGTGGTCGTAGCGAAGGACGGCACGGCCAATTTCACGACGATCACCCAAGCCTTGGGCGCAGCGCCGCCGAGAGGCAGGTTCGGCATCTTTGTGAAAGCAGGGGTTTACGAGGAAACGGTAAATATTACCAGACCAAATGTTGTGCTTTGGGGAGAGGGCATCGGCAAAACCGTGATTACTGGAAGCCGCTCTTGCCCCATAGAAAATAATAAGACCAAGACCGACATGATGCCTTGGACGGCCACAGTCACTGTGCAAGGGCATGGATTTATAGCTCAGGACGTGACAATAGAGAACAAGGCGGGTCCGACCGGTACTCCAGCCGTCGCTCTGCGCTGCGACTCCAACATGTCCCTTATTCACCGCTGCCGCATCGACGGGTACCAAGACACACTTTGGGCCCAAAACAACCTGCAGGTGTATCTGCGGTGCGACATCGCCGGCACAATTGATTTTGTGTACGGTAATGCGAAGGCCATTTTCCAGTATTGCCGCTTACTGGTGCGCAACCCGGGCAACGGCAAGCACAACGCAATCACGGCGCAGGGGCGCAACGACCCAACCAGCGAGGAGTCGGGGTTTGTATTCCAAGGTTGCAACATCACCGCCATGGAAGGAGAAAGCCTCGCGGGGGTGGATACCTATCTGGGGAGGCCCTGGAAGAACCATTCCAGGGTGGTTTTCATGGGCTGTTTCATGAGCGACATCATCAACCCTGACGGCTGGGTTCACTGGAACAAGGCAACACCTGTGGAGGAGACGACCAGGACAGTGGAGTACCTGGAGTATGGCAACAAAGGCGCTGGGGCAGAGACGGCCGACCGTGTGAAGTGGAAGGGCGTCCGGGTGATCACCGAGGCGGAGGCCAACCGTTTCACCGTTGATCACTTCATCAACGGTAACCAGTGGTTGCCCAACTTGGTCAACGGCGAGCAGATCAACTACACCCACGGTCTCATCTAG
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| Protein seq | MAERRSNMMMIYGFNLLIVAAAVRSSSSSILGDATVVSTDDRWVRRRLLLIDGMVDGKRMRKTVVVAKDGTANFTTITQALGAAPPRGRFGIFVKAGVYEETVNITRPNVVLWGEGIGKTVITGSRSCPIENNKTKTDMMPWTATVTVQGHGFIAQDVTIENKAGPTGTPAVALRCDSNMSLIHRCRIDGYQDTLWAQNNLQVYLRCDIAGTIDFVYGNAKAIFQYCRLLVRNPGNGKHNAITAQGRNDPTSEESGFVFQGCNITAMEGESLAGVDTYLGRPWKNHSRVVFMGCFMSDIINPDGWVHWNKATPVEETTRTVEYLEYGNKGAGAETADRVKWKGVRVITEAEANRFTVDHFINGNQWLPNLVNGEQINYTHGLI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_11g0006040 | OsAzu_11g0006040.02 | Chr11 | 4774639 | 4776784 | - | IsoSeq | ||
| CDS seq | ATGCGAAGGCCATTTTCCAGTATTGCCGCTTACTGGTGCGCAACCCGGGCAACGGCAAGCACAACGCAATCACGGCGCAGGGGCGCAACGACCCAACCAGCGAGGAGTCGGGGTTTGTATTCCAAGGTTGCAACATCACCGCCATGGAAGGAGAAAGCCTCGCGGGGGTGGATACCTATCTGGGGAGGCCCTGGAAGAACCATTCCAGGGTGGTTTTCATGGGCTGTT
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| Protein seq | MRRPFSSIAAYWCATRATASTTQSRRRGATTQPARSRGLYSKVATSPPWKEKASRGWIPIWGGPGRTIPGWFSWAV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 3.686984 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0194000 | SBH | 0.198490 | 0.0 | 2.991134 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g08750 | RBH | 0.000000 | 0.0 | 0.511433 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0192400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0005990 | RBH | 0.0 | 0.0 | 2.652913 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006050 | RBH | 0.0 | 0.0 | 1.121538 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006030 | RBH | 0.0 | 0.0 | 4.639483 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0005940 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0005910 | RBH | 0.0 | 0.0 | 67.761559 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0077700 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0005960 | RBH | 0.0 | 0.0 | 12.006804 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0078400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0005940 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006010 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006010 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006040 | SBH | 0.0 | 0.0 | 1.303121 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006020 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006050 | SBH | 0.0 | 0.0 | 3.934025 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0005820 | RBH | 0.0 | 0.0 | 10.658291 |
