Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_11g0001420 | OGI:11003370 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr11:962275-964324 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAATCTGCAAATTCGATCTTCCTTTCTTAAGTAGTCAAATTTAGAACAAGTTACATGTTATGTTAGTCCCAGTCAATCGACAGTACAATTAGTGACTACAGTCTCATACTAGCTTCTTGAGTTAATTCGTCGATTTCACTTGAATTGAAACATCTATTTTCCTACATGTCAAATAGAGCTCATCACCTTGAACTATGAAGAACAGATCATAGGTGTGTATGGCTTCCAGCAGATCCGGTCGAGAGCAATGACGAAAGCCATGATCATCGCACAATCTACATTCGGTTGGACCTCAAGACTGAAAACATCTTCAGCAAGAGTCAGTGACAACGATGCTGCTCCAGCCTTCTTCCTCGTTATCCTTGCGACTTCCTCACCGACGCTGTTGCGGATCTTGCAACTTCTTCTCCTGAAACTGCCCTCGATTGAGAAGCCTGGAACATGGCCAGTACGATCTGACGAAGCATGGGTACATCCTGACATGTGCACTTCTGCTTCATGACTGCTTTGCATAACTGAGCATTTTCTCATTGAGAAGAGTTGTTGTGATCTTGTCCTCTTGCCTTGGCCTTCTTCTGACGCTCTGTAACAATTCCATTGGTCATGCATGCTGATAATCTGTTGCAACAGAAGAAAGGAAAAGAAAATTCTTAGTTCTTACTTACTCCCCATGGGTTCTATTAATGGTTGGTTTCTGTTCTTTGGCCCATCTGCTGCACTTGTAATAAGAGGTAACAAAACTTCAGTCGGAAAGTAGAATGAACTAGCGGATAAATCAAACTCTGTATTGTAACCTCTCCATTTTTTAAGTTTTGATTTTAACTCTATATGGGATTTTGGGCAAATTAAAGCAAAACAGCATCAGAATAACCGAGGCTGGAACGATGAAAGCAATGCATTTTAGTCTTTGGTCAGCTGATTTTGTCTGCAAGTGTTTAGACTAATTATTTTCCTAGCTAGATGTATTAGTGGAGGTAGTTGATAGCATTTGCCTAAAAACCGTCGGCATGCACGATAATTTGCCTTAAATCTTTTTGGTGAGCTATGGTATCTTTTAGTATTTGTGAGACAAATAGACGAGACAAACATATATATACTTGTGATTTGGTGAATATTTTGAGGAAACAGTGAAAGCCTGGAGATACATTTTTTAAAAAAAAATCGAGAAAATGAAAGATCGGGTTGATGGACGAAACACTACTCTCGGGGCTCTCGGCAAAGCAGGATTTGCAGTATTTAAAAGTCTTCAGTGAAGTTTTGGAAGCAAACTTGGTGATCGTTCTATATCTTGAGAGAAGATATGTAAAATGAAGTCTACATTCGGACGAGGATGATTGACGAGCAGAATATAAACGATTTTTGGTTGAATGTATGATGAATTGACGATCGATCGGTTGAATGTATGATGAATTGACGATCGATCGACGATCGTTCATGCATGCTAACAGCTAACTCAATATATCGACCGAAACCGTACGTAAATATTATACTGATTGTCAGGTGTCAGGTAATACTAGTATACAACCACAAAGATGCATGAATATAGCCTATAGGAGGTAATTAATTAATTAATTAATTAATTAATTAATTAATCTGAGATGCAAATGCAAGATTTTGCAGGGGATGAATCATGAATGATTAGAAGATAGACAAGTGTATATACCTGTGGGGTGAGGGCGAGGAGAGGCGAGCCATGTCCATCCATGAGCAGCAGGTCGCCGGAGAAGAGCTTGCGGCGGCGGGAGTAGTTGTCAACACGGAAGGCGAGGGTGCCGGCGTGGTCGTAGACGGAGAAGCCGTCGGTGCCCTGGAAGCCCATGCTGGACCTCTTCCACACCGTGTACACCGCCGCTCGCGCTGCTGCCGTTGATGCGGCGGCGGCGGCGGCGGCATCTTGGCGTTGATTCGAAGGGTGTATCCGACTCATCGATCTTCTTCCTCGCTGCGATGCGATCTACCTATCTATCTGCAGAGAGAGAGAGAGAGAGAGAGTTTGGCGTTGGACGAGAGATGTAGTGCGCGTGCAATGCTTAACTCGTCAGTGCTGACC
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| CDS seq | ATGAGTCGGATACACCCTTCGAATCAACGCCAAGATGCCGCCGCCGCCGCCGCCGCATCAACGGCAGCAGCGCGAGCGGCGGTGTACACGGTGTGGAAGAGGTCCAGCATGGGCTTCCAGGGCACCGACGGCTTCTCCGTCTACGACCACGCCGGCACCCTCGCCTTCCGTGTTGACAACTACTCCCGCCGCCGCAAGCTCTTCTCCGGCGACCTGCTGCTCATGGATGGACATGGCTCGCCTCTCCTCGCCCTCACCCCACAGATTATCAGCATGCATGACCAATGGAATTGTTACAGAGCGTCAGAAGAAGGCCAAGGCAAGAGGACAAGATCACAACAACTCTTCTCAATGAGAAAATGCTCAGTTATGCAAAGCAGTCATGAAGCAGAAGTGCACATGTCAGGATGTACCCATGCTTCGTCAGATCGTACTGGCCATGTTCCAGGCTTCTCAATCGAGGGCAGTTTCAGGAGAAGAAGTTGCAAGATCCGCAACAGCGTCGGTGAGGAAGTCGCAAGGATAACGAGGAAGAAGGCTGGAGCAGCATCGTTGTCACTGACTCTTGCTGAAGATGTTTTCAGTCTTGAGGTCCAACCGAATGTAGATTGTGCGATGATCATGGCTTTCGTCATTGCTCTCGACCGGATCTGCTGGAAGCCATACACACCTATGATCTGTTCTTCATAG
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| Protein seq | MSRIHPSNQRQDAAAAAAASTAAARAAVYTVWKRSSMGFQGTDGFSVYDHAGTLAFRVDNYSRRRKLFSGDLLLMDGHGSPLLALTPQIISMHDQWNCYRASEEGQGKRTRSQQLFSMRKCSVMQSSHEAEVHMSGCTHASSDRTGHVPGFSIEGSFRRRSCKIRNSVGEEVARITRKKAGAASLSLTLAEDVFSLEVQPNVDCAMIMAFVIALDRICWKPYTPMICSS |
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| Function | Protein LURP-one-related 5 [UniProtKB/Swiss-Prot:Q9SSC7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_11g0001420 | OsAzu_11g0001420.01 | Chr11 | 962275 | 964324 | - | NAM | ||
| CDS seq | ATGAGTCGGATACACCCTTCGAATCAACGCCAAGATGCCGCCGCCGCCGCCGCCGCATCAACGGCAGCAGCGCGAGCGGCGGTGTACACGGTGTGGAAGAGGTCCAGCATGGGCTTCCAGGGCACCGACGGCTTCTCCGTCTACGACCACGCCGGCACCCTCGCCTTCCGTGTTGACAACTACTCCCGCCGCCGCAAGCTCTTCTCCGGCGACCTGCTGCTCATGGATGGACATGGCTCGCCTCTCCTCGCCCTCACCCCACAGATTATCAGCATGCATGACCAATGGAATTGTTACAGAGCGTCAGAAGAAGGCCAAGGCAAGAGGACAAGATCACAACAACTCTTCTCAATGAGAAAATGCTCAGTTATGCAAAGCAGTCATGAAGCAGAAGTGCACATGTCAGGATGTACCCATGCTTCGTCAGATCGTACTGGCCATGTTCCAGGCTTCTCAATCGAGGGCAGTTTCAGGAGAAGAAGTTGCAAGATCCGCAACAGCGTCGGTGAGGAAGTCGCAAGGATAACGAGGAAGAAGGCTGGAGCAGCATCGTTGTCACTGACTCTTGCTGAAGATGTTTTCAGTCTTGAGGTCCAACCGAATGTAGATTGTGCGATGATCATGGCTTTCGTCATTGCTCTCGACCGGATCTGCTGGAAGCCATACACACCTATGATCTGTTCTTCATAG
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| Protein seq | MSRIHPSNQRQDAAAAAAASTAAARAAVYTVWKRSSMGFQGTDGFSVYDHAGTLAFRVDNYSRRRKLFSGDLLLMDGHGSPLLALTPQIISMHDQWNCYRASEEGQGKRTRSQQLFSMRKCSVMQSSHEAEVHMSGCTHASSDRTGHVPGFSIEGSFRRRSCKIRNSVGEEVARITRKKAGAASLSLTLAEDVFSLEVQPNVDCAMIMAFVIALDRICWKPYTPMICSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.430997 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0121000 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g02800 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0121000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001300 | RBH | 0.000000 | 0.000000 | 0.252954 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0001470 | RBH | 0.0 | 3.210166 | 0.634908 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0001440 | RBH | 0.0 | 2.190040 | 0.650390 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0001430 | RBH | 0.0 | 0.231199 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001410 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0018100 | RBH | 0.0605955 | 2.4604915 | 0.0534325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001400 | RBH | 0.0 | 0.469576 | 0.297061 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0019700 | RBH | 0 | 0.8155105 | 0.0236265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001290 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001440 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001420 | SBH | 0.000000 | 9.212277 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001390 | RBH | 0.061930 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001450 | RBH | 0.159181 | 0.611071 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001410 | RBH | 0.0 | 0.837317 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0001900 | SBH | 0.289231 | 19.983721 | 4.109836 |
