Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_10g0014690 | OGI:10056440 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr10:19749319-19752102 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCCTTCCGACCGCGCCTCCCGCTCCCCCTCCTCCTCCTCCTCCTGCCTCACCTCCGGCGCCGCCGCTCCTCCCCCCGCCCGCCCGTGCCCGCGTGGAGACCGCTCTCGTATTATCCCTCGGCGGCGGCCGCGGCGGCGGAGGTGACGGAGTCCGAGGAGGACGCGGCGGCTGTTGGCAGGGACACCCGAGCCCCTCCCTCCATCGGCGGGATTGCACGGGGAGCGCCTAGGGTTGGCTGCAATGGCGGGGGGGCTGCCGATGACGAGGAGGTCGAGAGGAAGGCCCGCGCTGTCGCGCGGATCAAGCTCTGCCATGAGCTTCTGCGGGAGAGGAGGTGGCGCGCGATGCGGGCAGCCTTGGCGCAGCTGGTGACTGAGCAAGGTGAGCATGCTATGAATTTTCCCCATTCTGATTATCAACTCTACTCATGTGGTATCTGAATAACTATGGTGATTGGTGTGAGGAGGCGTAGGAATGGCATCGGTAGTTTTGAACTTCTGATCGATATGAATGTGTGACACAGGATATATTGTTTTTCCAGAGGCATTATCAATTGATCATTACCATATAAAAAACAGTAAGAAAAGGGTCGAAAGCAATGCATACATAGTTGTATTTGGTGTAGTATTATTACTGTAATTCGTTTTTTACTAGAAGGTCTCTGCAAGTATGACAAACTAGTAACATAAAAATTGTTCGCGTTTAATCTTATTGCGCTTCCTGCTGTAGGATCTGGGTCTGCAGCTGCTCTCTGTGACATCTTATGGAACAGATTCAGAGAGTGTGATTCCAACGGTTGTGTATGGGATGCTCTAGCGAACAGTTATGCTAGAGCTCAGATGGTTCATGATGCCCTTTACGTTCTTAGTAAAATGAGCAGCCTAAACATGCAAATCTCGGTGTTCACCTATGACAGTTTATTGCACGGCTTAAGGATGACAGACGTGGCATTGGAGCTTTTTGAAGAAATGGAGTCTTGTGGTGTCTCTCCCAGTGAATATTCGCATAGTATTATTATTAATGGCCTCTGTAAGCAAGATAAGGTTGGAGAAGCTTTATCTTTCCTTCAGGAAGCTAGGAAGGAGGGAAAGTTTAAACCCTTGGGAATGACCTTTAACATTCTTATGTCTGCATTGTGTAATTGGGGGTTTGTTCAGTCTGCAAAATCATTTTTATGCCTGATGCTGAAATATGGATTAGTCCCTGACAGGTATACCTTTTCTACCCTTATACACGGTCTATGTAAAGTAGGTTCAATGGAGGAAGCATTGGATCTTTTCGAGAGAGTGACAAAAGAAGGAATGGAACTTGAGATTGTGACCTACAATAGCCTTATCAATGGGTACCGATTGCTTGGTTTAACAAAAGAAATTCCTAAAATCATCCAGATGATGAGAGGCCAAGGTGTTGAACCTGATCTTGTTACATATACTATACTTATTGCTGGTCACTGCGAAAGTGGTGATGTTGAAGAAGGAATGAAGGTAAGGAAGGATGTCCTAGACCAAGGTTTGCAGTTGAATATTGTCACATATAGTGTCCTTCTCAATGCTCTCTTCAAAAAAGGCATGTTCTGCGAAATTGACAACCTACTCGGCGAGATCTACAATATTGGTTTGGATATGGATGTTATCGCATATTCCATCCTTATCCATGGGTATTGCAAGCTAGGGGAAATTGAAAAGGCTCTTCAAGTATGTAATGCAATGTGCAGTTCTCAGAGGGTAATGCCAACATCACTGAACCATTTTTCTATTCTTCTAGGACTTTGCAAGAAAGGATTGTTAGTTGAAGCAAGGTGGTATTTGGAAAATGTAGCTAGAAAATATGAGCCAACTGATGTAGTGTTCTATAATGTCGTTATTGATGGTTATGCAAAACTTGGTGATATTGTAAATGCTGTTCGTTTGTATGATCAGATCACTGTAGCTGGTATGCACCCAACCATTGTCACATGCAATTCTCTTCTATATGGGTATTGTAAAATTGGGGATCTGCAACTTGCCGAGAGCTATTTTAGGGCTATTCAGCTAAGTGGACTTCTACCAACAGCAGTGACATACACTACCTTGATGGATGCACTCTCTGAAGCTGGAGAAGTTAATACCATGCTAAGTCTTTTTGATGAAATGGTTGCAAAGAGGATCAAGGCAAATGCAGTAACTTACAGTGTCATTGTTAAAGGGCTTTGTAAGCAGCTCAGATTTGATGAGGCTATCAATGTTCTCAAAGATATGGATAGCAAAGGTATTAATGCTGACCCGATAACTTACAATACCCTTATACAAGGTTTCTGTGAATCAGAAAACGTTCAGATGGCTTTCCACATACATGACATCATGTTATGCCGTGGCCTTGTGCCGACACCTGTTACTTATAACTTGCTTATTAATGTGCTGTGTTTGAAGGGAAAAGTTATTCAAGCAGAAATACTTTTGGAGTCCCTCAGAGAAAATGGCATTAAGTTGAGAAAATTTGCGTACACAACACTTATCAAAGCTCAGTGCGCAAAAGGAATGCCTATCAATGCTGTTTTGTTAGTTGGTAAGCTTCTAGATGCAGGATTTGAAGCTTCTATTGAAGATTTCAGTGCAGCAATCAATCGACTTTGCAAAAGACAATTTGCCAAAGAAGCCTTTATGTTTGTCCCGATTATGCTATCTGTTGGTATTTACCCAGATACTCAAATATATTGTGTGCTAGGCAGAGCTCTGCAGAAAAATAGTGAGCTTGTCTATCTACCCATATTAAATGCACTTGCTGTTAAAACTGGTATTTAA
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| CDS seq | ATGCCCTTCCGACCGCGCCTCCCGCTCCCCCTCCTCCTCCTCCTCCTGCCTCACCTCCGGCGCCGCCGCTCCTCCCCCCGCCCGCCCGTGCCCGCGTGGAGACCGCTCTCGTATTATCCCTCGGCGGCGGCCGCGGCGGCGGAGGTGACGGAGTCCGAGGAGGACGCGGCGGCTGTTGGCAGGGACACCCGAGCCCCTCCCTCCATCGGCGGGATTGCACGGGGAGCGCCTAGGGTTGGCTGCAATGGCGGGGGGGCTGCCGATGACGAGGAGGTCGAGAGGAAGGCCCGCGCTGTCGCGCGGATCAAGCTCTGCCATGAGCTTCTGCGGGAGAGGAGGTGGCGCGCGATGCGGGCAGCCTTGGCGCAGCTGGTGACTGAGCAAGGATATATTGTTTTTCCAGAGGCATTATCAATTGATCATTACCATATAAAAAACAGATCTGGGTCTGCAGCTGCTCTCTGTGACATCTTATGGAACAGATTCAGAGAGTGTGATTCCAACGGTTGTGTATGGGATGCTCTAGCGAACAGTTATGCTAGAGCTCAGATGGTTCATGATGCCCTTTACGTTCTTAGTAAAATGAGCAGCCTAAACATGCAAATCTCGGTGTTCACCTATGACAGTTTATTGCACGGCTTAAGGATGACAGACGTGGCATTGGAGCTTTTTGAAGAAATGGAGTCTTGTGGTGTCTCTCCCAGTGAATATTCGCATAGTATTATTATTAATGGCCTCTGTAAGCAAGATAAGGTTGGAGAAGCTTTATCTTTCCTTCAGGAAGCTAGGAAGGAGGGAAAGTTTAAACCCTTGGGAATGACCTTTAACATTCTTATGTCTGCATTGTGTAATTGGGGGTTTGTTCAGTCTGCAAAATCATTTTTATGCCTGATGCTGAAATATGGATTAGTCCCTGACAGGTATACCTTTTCTACCCTTATACACGGTCTATGTAAAGTAGGTTCAATGGAGGAAGCATTGGATCTTTTCGAGAGAGTGACAAAAGAAGGAATGGAACTTGAGATTGTGACCTACAATAGCCTTATCAATGGGTACCGATTGCTTGGTTTAACAAAAGAAATTCCTAAAATCATCCAGATGATGAGAGGCCAAGGTGTTGAACCTGATCTTGTTACATATACTATACTTATTGCTGGTCACTGCGAAAGTGGTGATGTTGAAGAAGGAATGAAGGTAAGGAAGGATGTCCTAGACCAAGGTTTGCAGTTGAATATTGTCACATATAGTGTCCTTCTCAATGCTCTCTTCAAAAAAGGCATGTTCTGCGAAATTGACAACCTACTCGGCGAGATCTACAATATTGGTTTGGATATGGATGTTATCGCATATTCCATCCTTATCCATGGGTATTGCAAGCTAGGGGAAATTGAAAAGGCTCTTCAAGTATGTAATGCAATGTGCAGTTCTCAGAGGGTAATGCCAACATCACTGAACCATTTTTCTATTCTTCTAGGACTTTGCAAGAAAGGATTGTTAGTTGAAGCAAGGTGGTATTTGGAAAATGTAGCTAGAAAATATGAGCCAACTGATGTAGTGTTCTATAATGTCGTTATTGATGGTTATGCAAAACTTGGTGATATTGTAAATGCTGTTCGTTTGTATGATCAGATCACTGTAGCTGGTATGCACCCAACCATTGTCACATGCAATTCTCTTCTATATGGGTATTGTAAAATTGGGGATCTGCAACTTGCCGAGAGCTATTTTAGGGCTATTCAGCTAAGTGGACTTCTACCAACAGCAGTGACATACACTACCTTGATGGATGCACTCTCTGAAGCTGGAGAAGTTAATACCATGCTAAGTCTTTTTGATGAAATGGTTGCAAAGAGGATCAAGGCAAATGCAGTAACTTACAGTGTCATTGTTAAAGGGCTTTGTAAGCAGCTCAGATTTGATGAGGCTATCAATGTTCTCAAAGATATGGATAGCAAAGGTATTAATGCTGACCCGATAACTTACAATACCCTTATACAAGGTTTCTGTGAATCAGAAAACGTTCAGATGGCTTTCCACATACATGACATCATGTTATGCCGTGGCCTTGTGCCGACACCTGTTACTTATAACTTGCTTATTAATGTGCTGTGTTTGAAGGGAAAAGTTATTCAAGCAGAAATACTTTTGGAGTCCCTCAGAGAAAATGGCATTAAGTTGAGAAAATTTGCGTACACAACACTTATCAAAGCTCAGTGCGCAAAAGGAATGCCTATCAATGCTGTTTTGTTAGTTGGTAAGCTTCTAGATGCAGGATTTGAAGCTTCTATTGAAGATTTCAGTGCAGCAATCAATCGACTTTGCAAAAGACAATTTGCCAAAGAAGCCTTTATGTTTGTCCCGATTATGCTATCTGTTGGTATTTACCCAGATACTCAAATATATTGTGTGCTAGGCAGAGCTCTGCAGAAAAATAGTGAGCTTGTCTATCTACCCATATTAAATGCACTTGCTGTTAAAACTGGTATTTAA
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| Protein seq | MPFRPRLPLPLLLLLLPHLRRRRSSPRPPVPAWRPLSYYPSAAAAAAEVTESEEDAAAVGRDTRAPPSIGGIARGAPRVGCNGGGAADDEEVERKARAVARIKLCHELLRERRWRAMRAALAQLVTEQGYIVFPEALSIDHYHIKNRSGSAAALCDILWNRFRECDSNGCVWDALANSYARAQMVHDALYVLSKMSSLNMQISVFTYDSLLHGLRMTDVALELFEEMESCGVSPSEYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILMSALCNWGFVQSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYRLLGLTKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIVTYSVLLNALFKKGMFCEIDNLLGEIYNIGLDMDVIAYSILIHGYCKLGEIEKALQVCNAMCSSQRVMPTSLNHFSILLGLCKKGLLVEARWYLENVARKYEPTDVVFYNVVIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYCKIGDLQLAESYFRAIQLSGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFDEAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLINVLCLKGKVIQAEILLESLRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGKLLDAGFEASIEDFSAAINRLCKRQFAKEAFMFVPIMLSVGIYPDTQIYCVLGRALQKNSELVYLPILNALAVKTGI |
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| Function | Putative pentatricopeptide repeat-containing protein At1g13630 [UniProtKB/Swiss-Prot:Q9LMY5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_10g0014690 | OsAzu_10g0014690.01 | Chr10 | 19749319 | 19752102 | + | NAM | ||
| CDS seq | ATGCCCTTCCGACCGCGCCTCCCGCTCCCCCTCCTCCTCCTCCTCCTGCCTCACCTCCGGCGCCGCCGCTCCTCCCCCCGCCCGCCCGTGCCCGCGTGGAGACCGCTCTCGTATTATCCCTCGGCGGCGGCCGCGGCGGCGGAGGTGACGGAGTCCGAGGAGGACGCGGCGGCTGTTGGCAGGGACACCCGAGCCCCTCCCTCCATCGGCGGGATTGCACGGGGAGCGCCTAGGGTTGGCTGCAATGGCGGGGGGGCTGCCGATGACGAGGAGGTCGAGAGGAAGGCCCGCGCTGTCGCGCGGATCAAGCTCTGCCATGAGCTTCTGCGGGAGAGGAGGTGGCGCGCGATGCGGGCAGCCTTGGCGCAGCTGGTGACTGAGCAAGGATATATTGTTTTTCCAGAGGCATTATCAATTGATCATTACCATATAAAAAACAGATCTGGGTCTGCAGCTGCTCTCTGTGACATCTTATGGAACAGATTCAGAGAGTGTGATTCCAACGGTTGTGTATGGGATGCTCTAGCGAACAGTTATGCTAGAGCTCAGATGGTTCATGATGCCCTTTACGTTCTTAGTAAAATGAGCAGCCTAAACATGCAAATCTCGGTGTTCACCTATGACAGTTTATTGCACGGCTTAAGGATGACAGACGTGGCATTGGAGCTTTTTGAAGAAATGGAGTCTTGTGGTGTCTCTCCCAGTGAATATTCGCATAGTATTATTATTAATGGCCTCTGTAAGCAAGATAAGGTTGGAGAAGCTTTATCTTTCCTTCAGGAAGCTAGGAAGGAGGGAAAGTTTAAACCCTTGGGAATGACCTTTAACATTCTTATGTCTGCATTGTGTAATTGGGGGTTTGTTCAGTCTGCAAAATCATTTTTATGCCTGATGCTGAAATATGGATTAGTCCCTGACAGGTATACCTTTTCTACCCTTATACACGGTCTATGTAAAGTAGGTTCAATGGAGGAAGCATTGGATCTTTTCGAGAGAGTGACAAAAGAAGGAATGGAACTTGAGATTGTGACCTACAATAGCCTTATCAATGGGTACCGATTGCTTGGTTTAACAAAAGAAATTCCTAAAATCATCCAGATGATGAGAGGCCAAGGTGTTGAACCTGATCTTGTTACATATACTATACTTATTGCTGGTCACTGCGAAAGTGGTGATGTTGAAGAAGGAATGAAGGTAAGGAAGGATGTCCTAGACCAAGGTTTGCAGTTGAATATTGTCACATATAGTGTCCTTCTCAATGCTCTCTTCAAAAAAGGCATGTTCTGCGAAATTGACAACCTACTCGGCGAGATCTACAATATTGGTTTGGATATGGATGTTATCGCATATTCCATCCTTATCCATGGGTATTGCAAGCTAGGGGAAATTGAAAAGGCTCTTCAAGTATGTAATGCAATGTGCAGTTCTCAGAGGGTAATGCCAACATCACTGAACCATTTTTCTATTCTTCTAGGACTTTGCAAGAAAGGATTGTTAGTTGAAGCAAGGTGGTATTTGGAAAATGTAGCTAGAAAATATGAGCCAACTGATGTAGTGTTCTATAATGTCGTTATTGATGGTTATGCAAAACTTGGTGATATTGTAAATGCTGTTCGTTTGTATGATCAGATCACTGTAGCTGGTATGCACCCAACCATTGTCACATGCAATTCTCTTCTATATGGGTATTGTAAAATTGGGGATCTGCAACTTGCCGAGAGCTATTTTAGGGCTATTCAGCTAAGTGGACTTCTACCAACAGCAGTGACATACACTACCTTGATGGATGCACTCTCTGAAGCTGGAGAAGTTAATACCATGCTAAGTCTTTTTGATGAAATGGTTGCAAAGAGGATCAAGGCAAATGCAGTAACTTACAGTGTCATTGTTAAAGGGCTTTGTAAGCAGCTCAGATTTGATGAGGCTATCAATGTTCTCAAAGATATGGATAGCAAAGGTATTAATGCTGACCCGATAACTTACAATACCCTTATACAAGGTTTCTGTGAATCAGAAAACGTTCAGATGGCTTTCCACATACATGACATCATGTTATGCCGTGGCCTTGTGCCGACACCTGTTACTTATAACTTGCTTATTAATGTGCTGTGTTTGAAGGGAAAAGTTATTCAAGCAGAAATACTTTTGGAGTCCCTCAGAGAAAATGGCATTAAGTTGAGAAAATTTGCGTACACAACACTTATCAAAGCTCAGTGCGCAAAAGGAATGCCTATCAATGCTGTTTTGTTAGTTGGTAAGCTTCTAGATGCAGGATTTGAAGCTTCTATTGAAGATTTCAGTGCAGCAATCAATCGACTTTGCAAAAGACAATTTGCCAAAGAAGCCTTTATGTTTGTCCCGATTATGCTATCTGTTGGTATTTACCCAGATACTCAAATATATTGTGTGCTAGGCAGAGCTCTGCAGAAAAATAGTGAGCTTGTCTATCTACCCATATTAAATGCACTTGCTGTTAAAACTGGTATTTAA
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| Protein seq | MPFRPRLPLPLLLLLLPHLRRRRSSPRPPVPAWRPLSYYPSAAAAAAEVTESEEDAAAVGRDTRAPPSIGGIARGAPRVGCNGGGAADDEEVERKARAVARIKLCHELLRERRWRAMRAALAQLVTEQGYIVFPEALSIDHYHIKNRSGSAAALCDILWNRFRECDSNGCVWDALANSYARAQMVHDALYVLSKMSSLNMQISVFTYDSLLHGLRMTDVALELFEEMESCGVSPSEYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILMSALCNWGFVQSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYRLLGLTKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIVTYSVLLNALFKKGMFCEIDNLLGEIYNIGLDMDVIAYSILIHGYCKLGEIEKALQVCNAMCSSQRVMPTSLNHFSILLGLCKKGLLVEARWYLENVARKYEPTDVVFYNVVIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYCKIGDLQLAESYFRAIQLSGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFDEAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLINVLCLKGKVIQAEILLESLRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGKLLDAGFEASIEDFSAAINRLCKRQFAKEAFMFVPIMLSVGIYPDTQIYCVLGRALQKNSELVYLPILNALAVKTGI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.381477 | 1.053868 | 2.036772 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0479200 | RBH | 0.225641 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g33874 | RBH | 0.861256 | 0.999103 | 0.282625 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0479200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0020170 | SBH | 0.140750 | 7.823378 | 1.135217 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0014950 | RBH | 0.103185 | 1.079726 | 0.448452 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0014390 | RBH | 0.507404 | 1.343051 | 3.439126 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0014740 | RBH | 0.028640 | 0.138606 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0014620 | RBH | 1.680272 | 0.000000 | 6.181737 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0296600 | RBH | 0 | 3.885548 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0014600 | RBH | 0.261797 | 0.070239 | 0.339435 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0319000 | RBH | 2.1791715 | 6.484914 | 8.122781 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0014300 | RBH | 0.082957 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0014200 | RBH | 0.256387 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0014620 | RBH | 3.305005 | 3.710979 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0014330 | RBH | 0.438765 | 0.0 | 0.243379 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0014870 | RBH | 0.192708 | 1.735502 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G014550 | RBH | 0.377792 | 1.059771 | 0.641282 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0014520 | RBH | 0.475260 | 4.757458 | 2.273391 |
