Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_10g0011720 | OGI:10049810 | 10/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr10:16829495-16829971 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCGTCCGGCCATCCCGCCGCCTGTGCGGGGCCAGGGCAGGGGAGCCCCGCGCCCGCCAAGCATCGTGCCGGCGGCGCCCCGTGGTGGAGCGGCGTGGCGTGGAGTACCCCTCTCCATCGGCGTCGATGCGGCCTCTCCGCTGGTGCCCGCGACCGCGAGTACGCATCGGAGGGAGATCGTCCTAGACGACGTTGACAAGCGCCCTCACGTGGATGATGATGCGGCCCTTCTTCTACATATCGGAGTTCGACTTCCTGCGACTGCGACCCCGCCACCGGAGGACGTCGCTGGCGACGACATGATCGACGCACCCCCGCCGCCGCCGCCCCCGCCCATGGAGGTTCAGCTCGGTGCTGACGTGCTGCCTCCTCAGCCGGCTGTGGAGATCGACGACGACGACGTGCGCGACGCACCCCTGCCGCCGGCCACGGAGGTCTTCCACGACGACGGCGCAGCCGCTGCCAAGGCACCATAG
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| CDS seq | ATGCGTCCGGCCATCCCGCCGCCTGTGCGGGGCCAGGGCAGGGGAGCCCCGCGCCCGCCAAGCATCGTGCCGGCGGCGCCCCGTGGTGGAGCGGCGTGGCGTGGAGTACCCCTCTCCATCGGCGTCGATGCGGCCTCTCCGCTGGTGCCCGCGACCGCGAGTACGCATCGGAGGGAGATCGTCCTAGACGACGTTGACAAGCGCCCTCACGTGGATGATGATGCGGCCCTTCTTCTACATATCGGAGTTCGACTTCCTGCGACTGCGACCCCGCCACCGGAGGACGTCGCTGGCGACGACATGATCGACGCACCCCCGCCGCCGCCGCCCCCGCCCATGGAGGTTCAGCTCGGTGCTGACGTGCTGCCTCCTCAGCCGGCTGTGGAGATCGACGACGACGACGTGCGCGACGCACCCCTGCCGCCGGCCACGGAGGTCTTCCACGACGACGGCGCAGCCGCTGCCAAGGCACCATAG
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| Protein seq | MRPAIPPPVRGQGRGAPRPPSIVPAAPRGGAAWRGVPLSIGVDAASPLVPATASTHRREIVLDDVDKRPHVDDDAALLLHIGVRLPATATPPPEDVAGDDMIDAPPPPPPPPMEVQLGADVLPPQPAVEIDDDDVRDAPLPPATEVFHDDGAAAAKAP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_10g0011720 | OsAzu_10g0011720.01 | Chr10 | 16829495 | 16829971 | + | NAM | ||
| CDS seq | ATGCGTCCGGCCATCCCGCCGCCTGTGCGGGGCCAGGGCAGGGGAGCCCCGCGCCCGCCAAGCATCGTGCCGGCGGCGCCCCGTGGTGGAGCGGCGTGGCGTGGAGTACCCCTCTCCATCGGCGTCGATGCGGCCTCTCCGCTGGTGCCCGCGACCGCGAGTACGCATCGGAGGGAGATCGTCCTAGACGACGTTGACAAGCGCCCTCACGTGGATGATGATGCGGCCCTTCTTCTACATATCGGAGTTCGACTTCCTGCGACTGCGACCCCGCCACCGGAGGACGTCGCTGGCGACGACATGATCGACGCACCCCCGCCGCCGCCGCCCCCGCCCATGGAGGTTCAGCTCGGTGCTGACGTGCTGCCTCCTCAGCCGGCTGTGGAGATCGACGACGACGACGTGCGCGACGCACCCCTGCCGCCGGCCACGGAGGTCTTCCACGACGACGGCGCAGCCGCTGCCAAGGCACCATAG
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| Protein seq | MRPAIPPPVRGQGRGAPRPPSIVPAAPRGGAAWRGVPLSIGVDAASPLVPATASTHRREIVLDDVDKRPHVDDDAALLLHIGVRLPATATPPPEDVAGDDMIDAPPPPPPPPMEVQLGADVLPPQPAVEIDDDDVRDAPLPPATEVFHDDGAAAAKAP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g29690 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0011940 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011650 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0011980 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0011710 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0258000 | RBH | 0.023661 | 0.0447305 | 0.0597865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0011760 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0277400 | RBH | 0 | 0.054803 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011500 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011480 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0011900 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011490 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0011980 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G011850 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0011790 | RBH | 0.0 | 0.0 | 0.0 |
