Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_08g0020580 | OGI:08070280 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr08:25086630-25087474 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATTTGCCTTGCCTTGCTCAATTTCATGATGAAAACATTCCAGGTTTTCATACAAGAAATTTAAAATTAAAAAAGAAAAGAAAGAAAGAAAGAAGTTGAAGAAGAAATCTGAATCCCTAAATCATCATCATCATCATCATCATCAGTCACCTTGTGATGCATCTCCTAGCAACAAGAACACCACAGGGAGGAGCAGTGAGCTCCAGGTCACAGAGCGCCGACATCGAGTAGGTGTAGTGCCAGAACCAGAGCTTGGCCTGCACCTTGAACGTGCCCCTGATGGTGTACACCACCCTGTTGCTCCTCACCTGGTTCACCATCGCCACGGCGAGCTCCGGCGGCAGCGCCACCTGGCTGGACACCATGTGCACGCTGATGATCTGCGACTGCCCCCGCCGCTGCACGAACGGCGCCGGCAGCGCCTGCGCCGCCATCCGCCGGCCGCCGAAGAAGAGCTCCACGGCGGCCGACCGGAACACCACGTCCATCTTCTGGTTGGGGTTGGACACGTTCGCCGCCACCGTCATGTCGCCGTTCACGTACGGCGCCGGCGAGGTCGAGCCGACGTAGACGGCGTTCAGGGTGGCGCCCGCGGCGTCGAACGACGGCGCCCGGGGCCTCACCGCCAGGAACACGACGAGGATCACCGCGCCGGCGGCGATCAGGAGGAGGCTGAAGGCGAAGCACACGATCGCCGCGCACCACATCGCCGGCGACGTCCGCTGCCTCGGCTGCAGGATCAGCTTCGGCGGCGGCGGCGGCGGCAGCGCCGGCGGCTGCTGCTTCGTGGCAATCATCTTCAGTAGGATGCTTCTTGGAGACTGGACATGGTAAGGAGTCGCCAT
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| CDS seq | ATGGCGACTCCTTACCATGTCCAGTCTCCAAGAAGCATCCTACTGAAGATGATTGCCACGAAGCAGCAGCCGCCGGCGCTGCCGCCGCCGCCGCCGCCGAAGCTGATCCTGCAGCCGAGGCAGCGGACGTCGCCGGCGATGTGGTGCGCGGCGATCGTGTGCTTCGCCTTCAGCCTCCTCCTGATCGCCGCCGGCGCGGTGATCCTCGTCGTGTTCCTGGCGGTGAGGCCCCGGGCGCCGTCGTTCGACGCCGCGGGCGCCACCCTGAACGCCGTCTACGTCGGCTCGACCTCGCCGGCGCCGTACGTGAACGGCGACATGACGGTGGCGGCGAACGTGTCCAACCCCAACCAGAAGATGGACGTGGTGTTCCGGTCGGCCGCCGTGGAGCTCTTCTTCGGCGGCCGGCGGATGGCGGCGCAGGCGCTGCCGGCGCCGTTCGTGCAGCGGCGGGGGCAGTCGCAGATCATCAGCGTGCACATGGTGTCCAGCCAGGTGGCGCTGCCGCCGGAGCTCGCCGTGGCGATGGTGAACCAGGTGAGGAGCAACAGGGTGGTGTACACCATCAGGGGCACGTTCAAGGTGCAGGCCAAGCTCTGGTTCTGGCACTACACCTACTCGATGTCGGCGCTCTGTGACCTGGAGCTCACTGCTCCTCCCTGTGGTGTTCTTGTTGCTAGGAGATGCATCACAAGGTGA
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| Protein seq | MATPYHVQSPRSILLKMIATKQQPPALPPPPPPKLILQPRQRTSPAMWCAAIVCFAFSLLLIAAGAVILVVFLAVRPRAPSFDAAGATLNAVYVGSTSPAPYVNGDMTVAANVSNPNQKMDVVFRSAAVELFFGGRRMAAQALPAPFVQRRGQSQIISVHMVSSQVALPPELAVAMVNQVRSNRVVYTIRGTFKVQAKLWFWHYTYSMSALCDLELTAPPCGVLVARRCITR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_08g0020580 | OsAzu_08g0020580.01 | Chr08 | 25086630 | 25087474 | - | NAM | ||
| CDS seq | ATGGCGACTCCTTACCATGTCCAGTCTCCAAGAAGCATCCTACTGAAGATGATTGCCACGAAGCAGCAGCCGCCGGCGCTGCCGCCGCCGCCGCCGCCGAAGCTGATCCTGCAGCCGAGGCAGCGGACGTCGCCGGCGATGTGGTGCGCGGCGATCGTGTGCTTCGCCTTCAGCCTCCTCCTGATCGCCGCCGGCGCGGTGATCCTCGTCGTGTTCCTGGCGGTGAGGCCCCGGGCGCCGTCGTTCGACGCCGCGGGCGCCACCCTGAACGCCGTCTACGTCGGCTCGACCTCGCCGGCGCCGTACGTGAACGGCGACATGACGGTGGCGGCGAACGTGTCCAACCCCAACCAGAAGATGGACGTGGTGTTCCGGTCGGCCGCCGTGGAGCTCTTCTTCGGCGGCCGGCGGATGGCGGCGCAGGCGCTGCCGGCGCCGTTCGTGCAGCGGCGGGGGCAGTCGCAGATCATCAGCGTGCACATGGTGTCCAGCCAGGTGGCGCTGCCGCCGGAGCTCGCCGTGGCGATGGTGAACCAGGTGAGGAGCAACAGGGTGGTGTACACCATCAGGGGCACGTTCAAGGTGCAGGCCAAGCTCTGGTTCTGGCACTACACCTACTCGATGTCGGCGCTCTGTGACCTGGAGCTCACTGCTCCTCCCTGTGGTGTTCTTGTTGCTAGGAGATGCATCACAAGGTGA
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| Protein seq | MATPYHVQSPRSILLKMIATKQQPPALPPPPPPKLILQPRQRTSPAMWCAAIVCFAFSLLLIAAGAVILVVFLAVRPRAPSFDAAGATLNAVYVGSTSPAPYVNGDMTVAANVSNPNQKMDVVFRSAAVELFFGGRRMAAQALPAPFVQRRGQSQIISVHMVSSQVALPPELAVAMVNQVRSNRVVYTIRGTFKVQAKLWFWHYTYSMSALCDLELTAPPCGVLVARRCITR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0494000 | RBH | 0.227534 | 0.0 | 1.110399 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g38580 | RBH | 0.153870 | 0.0 | 0.285838 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0494000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020500 | RBH | 0.0 | 1.487550 | 0.272042 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0020370 | RBH | 0.0 | 7.709722 | 1.690546 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0020570 | RBH | 0.160965 | 0.065646 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020470 | RBH | 0.0 | 6.526763 | 0.787411 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0388800 | RBH | 2.1388965 | 6.8639985 | 5.2333775 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020340 | RBH | 0.0 | 0.723354 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0409400 | RBH | 2.1241215 | 7.386414 | 7.06195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0019680 | RBH | 0.0 | 0.096126 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0019960 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0019810 | RBH | 0.0 | 1.764769 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0020650 | RBH | 0.255840 | 0.321171 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0020000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G020160 | RBH | 0.0 | 1.052576 | 0.303130 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0020310 | RBH | 0.0 | 0.0 | 0.952130 |
