Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_08g0006940 | OGI:08017150 | 10/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr08:6487440-6487847 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCGACATCATTAGCTGAAGTTCCGCAAGGAGGACATATCAAAGAGGTCATTGCAGAGGGCTCTTCGGGAGGCCTATCATCGTCAACACAGTTATTGGCTACAAAACGAAAGTTAGCAGCATCGAATCCTCCAACAGCAAAGCGAAGACGATCACCTATTGCATTGCCAATAGTCAGGTCTCCAGGAGTGCGACAAATTATTTCCCAAAATGAAGTCATCATGGAGAGATCACAAGTTGCTGGTCAGATGTCCCCAAGTGCAGAGTCTCCAAGAGCTAGATCTATGTCTCCAGTGGCAAGGTTCGTATCAAGTCCGTCTGCTATCCCAATTGAGCTGGATGTTGAAACTCAGCCAAGGGAGTCAACTCAATCAACACCTCATGTTGTGACTCATCGTTCTGGTTAG
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| CDS seq | ATGTCGACATCATTAGCTGAAGTTCCGCAAGGAGGACATATCAAAGAGGTCATTGCAGAGGGCTCTTCGGGAGGCCTATCATCGTCAACACAGTTATTGGCTACAAAACGAAAGTTAGCAGCATCGAATCCTCCAACAGCAAAGCGAAGACGATCACCTATTGCATTGCCAATAGTCAGGTCTCCAGGAGTGCGACAAATTATTTCCCAAAATGAAGTCATCATGGAGAGATCACAAGTTGCTGGTCAGATGTCCCCAAGTGCAGAGTCTCCAAGAGCTAGATCTATGTCTCCAGTGGCAAGGTTCGTATCAAGTCCGTCTGCTATCCCAATTGAGCTGGATGTTGAAACTCAGCCAAGGGAGTCAACTCAATCAACACCTCATGTTGTGACTCATCGTTCTGGTTAG
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| Protein seq | MSTSLAEVPQGGHIKEVIAEGSSGGLSSSTQLLATKRKLAASNPPTAKRRRSPIALPIVRSPGVRQIISQNEVIMERSQVAGQMSPSAESPRARSMSPVARFVSSPSAIPIELDVETQPRESTQSTPHVVTHRSG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_08g0006940 | OsAzu_08g0006940.01 | Chr08 | 6487440 | 6487847 | + | NAM | ||
| CDS seq | ATGTCGACATCATTAGCTGAAGTTCCGCAAGGAGGACATATCAAAGAGGTCATTGCAGAGGGCTCTTCGGGAGGCCTATCATCGTCAACACAGTTATTGGCTACAAAACGAAAGTTAGCAGCATCGAATCCTCCAACAGCAAAGCGAAGACGATCACCTATTGCATTGCCAATAGTCAGGTCTCCAGGAGTGCGACAAATTATTTCCCAAAATGAAGTCATCATGGAGAGATCACAAGTTGCTGGTCAGATGTCCCCAAGTGCAGAGTCTCCAAGAGCTAGATCTATGTCTCCAGTGGCAAGGTTCGTATCAAGTCCGTCTGCTATCCCAATTGAGCTGGATGTTGAAACTCAGCCAAGGGAGTCAACTCAATCAACACCTCATGTTGTGACTCATCGTTCTGGTTAG
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| Protein seq | MSTSLAEVPQGGHIKEVIAEGSSGGLSSSTQLLATKRKLAASNPPTAKRRRSPIALPIVRSPGVRQIISQNEVIMERSQVAGQMSPSAESPRARSMSPVARFVSSPSAIPIELDVETQPRESTQSTPHVVTHRSG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.761653 | 0.0 | 1.413119 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0208700 | RBH | 0.214475 | 0.438878 | 0.436257 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g10780 | RBH | 0.142946 | 0.485322 | 0.110681 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0208700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006910 | RBH | 0.0 | 0.0 | 0.390982 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007000 | RBH | 0.0 | 0.0 | 2.434183 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006880 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006750 | RBH | 0.354934 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006980 | RBH | 0.0 | 0.0 | 1.083638 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006740 | RBH | 0.384274 | 0.0 | 0.434857 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0006570 | RBH | 0.0 | 0.0 | 3.357114 |
