Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsAzu_08g0001790		OGI:08003840 \| 16/16			Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)			Chr08:1553302-1556516		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		TTATTGGAGCTGAAGAAATCAAGCTAAATCATAAAATAAGTAAGAGTGAAACTTTTAAAAAATGAAATAAGATGTCATTAAATATATCAATATATAGATTAAAATATAACAAATTGAAACTCCTAACTTTTAGGGTCCCTGATCGGTTGCTCAAAGATGGCAATGCCGTCAACTCACTAGCTGCCTGGAGTATGCATGCATTCTACTCCTTGGCATTAGCCATCATTACTTTACCTCCTTCTCCGAACAACATATTTTTCAAACTTTAAACCAAATTTTCTCCTAAATTATCTAACTACATTGTTGTATTAATTGCAATTGAATCTTTACAACAATATCCCTTATCATTATATTATTTATAATAATAAAAATACATAAAACATTAAGTTATAAAAACTAAAATATCACAAAATACTTGATATAATATCTAAAGAACAATATTAAACATTTACAAATGAGCAAGTGAAACATTAAAAAAGGACTTATTGAAACATCCAAATTACAAAGCGTGCAACACTAAAAAAAATGTGTTGCAACACAATTTAGTTTCACTTAAAACATTTGTTTTTTACATGTGAAACATCTAAATTCAACCGTTAAAACACATAATTATTTTCTCTAGAATATAATCATGCGAGAATTTAATTATAACAAATTTTCTCCACTATACATGGTCTTATTATTACTTTATACCATATCCAAAGTTGCGCAAAACGATGGACAAACGCAAGACATAGTAGACAAACCAAATTTCGAAGCATTTCACCATGCGGTAGTAAAATGCATGAGTAAATTCAACTGAAATACTTACTCCATCTACTTTTGATAATCATATTTCCAAATCTGAAAATTTTATTTTTAATAGACATATTTCAATACAACAATCTATCATCTTAATGACTTTTTCGGATTTAATGCATGACTCTCCATTCTTCCACACATGATTGGCTACATAGGCATTAAGAAATGTAAATATTAATGAATCGCTTGTTTACAAGGAATGACTAGTAGCATGTTTAAATGGATGATAAGTAGAATTACTTATCCTTGATCTATGTGACAAGATGAAATATGACTATCAGAAGTAGATGGAAGGAGTATTACAGGTTCTCCTTCTCGTCATCTGAGCTGCCGGCTTCTTCCTCAGTTCGGACCAGATCCAAAAAGCTTAAGCTTCCGTCGCCGCCCTTTCTTCTCTTTCGCGACGACTCCACCATGCTCCGCATCGCCGGCGTCGCGAACCCTCCAAACCCCCCGAAAGAGAGAGATGGCGGCGCCGCCGATCCACACATCGGCATTGACCACGTCGGCGCCGCCGCTCCAAACAGCTGCACCGACGTGGCGCGCTGCTGTGCGTGCGAGCTCATGCCGGCGAGCATGCACGCGCGCCCGGTCTGCTCGTACTCCCGCCTGCTCGCCACGCGGGCGCTCAGCTCGCGCAGCTCCGACAGCAGCGCCGCGCACCTGGCGTCGCCGGCGAGACCCGGCGCCGACCGGGCGAGCGCCTCCTGCCGGCGGTCGAGTATCGCCTTCGCCGCCGCGTGCGCGCCGCGCTCGGCTGCTTCTTGCGCCGCCGCGATGTCTTCGGTTGCCTCCACGCGGAAACGCTCGCGCTCCACCTCAATGGACGGCTCCGTGTTGGTGGCCACCTCCACTGGTCTTTGCACTACGGCGTGCTCGCCGGCGACGACCATCTGCTGCCGACTCGCGGTGTCGCGGTATGTGCAGCTCACCTTGATCAGTTCTGTGACGTCTTCCCCGGCGCCGGCTGCTGGCACGTCCACGAACACCAAGAAACGCCTCTCCTCGTCGGCGTAGAGCTCGCCGACGTCCACCGACGCGGCCCGGCCGTCCCCATTGACGAGGCTTTCGTAGCGACCGGACTTGACCGACCGGACGCGGACGCCGGGGTGCGGGCAGGTGATGGCGATGCGCGCCTCCTGCACGGTGACCGAGAGGAGCCCGCCGATGCACTGCGCGAACGCGTCCTGGACGACGGCCTGGTTCTCGATGAAGGAGAACGTGCCCCCGGTCTCCTCCGCGATGGCGTTCATCGCCACCGCGTCGTGGTCGGTGCCGAAGCCGAACGTGTGGACCGACAGGCGCCGGTCGCCGGAGCGCTTGAAGGAAGGCGGCACGAGAACACTGTAGTTCTTTGAGTTCGAGGCGCCCCACCCGCCGTTGACATTGTACGTGTCTTGACCGTCGGAGAGAAGGATGACGCTGGCGACGGCGTTCCGGTAGCGGCGACCGTCGAACACCTTGGCGGCTTCGACAAGGCCCTTGAGGATGTTCGTGCCGCCGCCCGCAGCGAGGGATTCCATGGCGCTCTTGGCCGACGCCTTGCCGTCGTCCGACATCCGCGTCAGCCGGATCACTCGCTGCGCATTGTAGGAGAAGGACACGACGGCGAGGCGGTCGCCGGGGCCGAGCTTATCAATGACGAACCCCATGGCGCGCTTCAGGAGCGTGAGCTTGTAGCCTTCCATGCTGCCGCTCACGTCGAGCACCGTGACGAGGTCGACCGGCGCGCGCGCCGCCGCCGTCGCCTCCGCCACGGCGATGCTAGGAGCTTTGGCATGGACAAGGACGACGAAATTGTCCCTGATCACGCTCCTCGCCACGGCCGTGTGCTCGCAGTGCGTCCTGACGACGAGCGCCCCATTGCTCGCCGGTGCCACGCCGCCACCGTGTGCCGCTACCGGCGGCTCCACCGGCTCGTCGTCGTCATACTCTTGGCTCACCCAGAAGGGCGAAAAGGTCGGCGGCGGCGCGGGAACGCCGGCGGGAAAGAAGGTGGACGGCGGCGCCGGCGAAGGGTTTGGCACGGCCACCGTGTCGCGCCACCGCGCGTTGCACGCCGGGCAGATGACGCTCCCGGAGAAGCAGCGGAGGTGGAACGTGTGGCTGCACTCGGACGTGACGGTGGGCTGGCTGTGGTCTATGACGCCGCGGCATTTGTCGCACGACGACCATGGCCGGACGCGCATGGGAAAGCCCGTCGTCTGTCCAAACGGCGTCGTGCTGCCTCCGGCGGGTTGCGGCGGCGGGTTCGATGGCGCGTTGGTCCATCGCGCGTTGCACGCCGGGCAGACGTCGGCGCCGGAGACGACGCAGTGGAGGTGGAACCTGTGCGAGCACTCCGCCGTCAAGGGAGGCTCCCAGAGGCCGAAGTCGCCGTGGCAGCCGTCGCAGCGGCCTCCCGCCGATGCCAT More
CDS seq		ATGGCATCGGCGGGAGGCCGCTGCGACGGCTGCCACGGCGACTTCGGCCTCTGGGAGCCTCCCTTGACGGCGGAGTGCTCGCACAGGTTCCACCTCCACTGCGTCGTCTCCGGCGCCGACGTCTGCCCGGCGTGCAACGCGCGATGGACCAACGCGCCATCGAACCCGCCGCCGCAACCCGCCGGAGGCAGCACGACGCCGTTTGGACAGACGACGGGCTTTCCCATGCGCGTCCGGCCATGGTCGTCGTGCGACAAATGCCGCGGCGTCATAGACCACAGCCAGCCCACCGTCACGTCCGAGTGCAGCCACACGTTCCACCTCCGCTGCTTCTCCGGGAGCGTCATCTGCCCGGCGTGCAACGCGCGGTGGCGCGACACGGTGGCCGTGCCAAACCCTTCGCCGGCGCCGCCGTCCACCTTCTTTCCCGCCGGCGTTCCCGCGCCGCCGCCGACCTTTTCGCCCTTCTGGGTGAGCCAAGAGTATGACGACGACGAGCCGGTGGAGCCGCCGGTAGCGGCACACGGTGGCGGCGTGGCACCGGCGAGCAATGGGGCGCTCGTCGTCAGGACGCACTGCGAGCACACGGCCGTGGCGAGGAGCGTGATCAGGGACAATTTCGTCGTCCTTGTCCATGCCAAAGCTCCTAGCATCGCCGTGGCGGAGGCGACGGCGGCGGCGCGCGCGCCGGTCGACCTCGTCACGGTGCTCGACGTGAGCGGCAGCATGGAAGGCTACAAGCTCACGCTCCTGAAGCGCGCCATGGGGTTCGTCATTGATAAGCTCGGCCCCGGCGACCGCCTCGCCGTCGTGTCCTTCTCCTACAATGCGCAGCGAGTGATCCGGCTGACGCGGATGTCGGACGACGGCAAGGCGTCGGCCAAGAGCGCCATGGAATCCCTCGCTGCGGGCGGCGGCACGAACATCCTCAAGGGCCTTGTCGAAGCCGCCAAGGTGTTCGACGGTCGCCGCTACCGGAACGCCGTCGCCAGCGTCATCCTTCTCTCCGACGGTCAAGACACGTACAATGTCAACGGCGGGTGGGGCGCCTCGAACTCAAAGAACTACAGTGTTCTCGTGCCGCCTTCCTTCAAGCGCTCCGGCGACCGGCGCCTGTCGGTCCACACGTTCGGCTTCGGCACCGACCACGACGCGGTGGCGATGAACGCCATCGCGGAGGAGACCGGGGGCACGTTCTCCTTCATCGAGAACCAGGCCGTCGTCCAGGACGCGTTCGCGCAGTGCATCGGCGGGCTCCTCTCGGTCACCGTGCAGGAGGCGCGCATCGCCATCACCTGCCCGCACCCCGGCGTCCGCGTCCGGTCGGTCAAGTCCGGTCGCTACGAAAGCCTCGTCAATGGGGACGGCCGGGCCGCGTCGGTGGACGTCGGCGAGCTCTACGCCGACGAGGAGAGGCGTTTCTTGGTGTTCGTGGACGTGCCAGCAGCCGGCGCCGGGGAAGACGTCACAGAACTGATCAAGGTGAGCTGCACATACCGCGACACCGCGAGTCGGCAGCAGATGGTCGTCGCCGGCGAGCACGCCGTAGTGCAAAGACCAGTGGAGGTGGCCACCAACACGGAGCCGTCCATTGAGGTGGAGCGCGAGCGTTTCCGCGTGGAGGCAACCGAAGACATCGCGGCGGCGCAAGAAGCAGCCGAGCGCGGCGCGCACGCGGCGGCGAAGGCGATACTCGACCGCCGGCAGGAGGCGCTCGCCCGGTCGGCGCCGGGTCTCGCCGGCGACGCCAGGTGCGCGGCGCTGCTGTCGGAGCTGCGCGAGCTGAGCGCCCGCGTGGCGAGCAGGCGGGAGTACGAGCAGACCGGGCGCGCGTGCATGCTCGCCGGCATGAGCTCGCACGCACAGCAGCGCGCCACGTCGGTGCAGCTGTTTGGAGCGGCGGCGCCGACGTGGTCAATGCCGATGTGTGGATCGGCGGCGCCGCCATCTCTCTCTTTCGGGGGGTTTGGAGGGTTCGCGACGCCGGCGATGCGGAGCATGCTCCAATAA More
Protein seq		MASAGGRCDGCHGDFGLWEPPLTAECSHRFHLHCVVSGADVCPACNARWTNAPSNPPPQPAGGSTTPFGQTTGFPMRVRPWSSCDKCRGVIDHSQPTVTSECSHTFHLRCFSGSVICPACNARWRDTVAVPNPSPAPPSTFFPAGVPAPPPTFSPFWVSQEYDDDEPVEPPVAAHGGGVAPASNGALVVRTHCEHTAVARSVIRDNFVVLVHAKAPSIAVAEATAAARAPVDLVTVLDVSGSMEGYKLTLLKRAMGFVIDKLGPGDRLAVVSFSYNAQRVIRLTRMSDDGKASAKSAMESLAAGGGTNILKGLVEAAKVFDGRRYRNAVASVILLSDGQDTYNVNGGWGASNSKNYSVLVPPSFKRSGDRRLSVHTFGFGTDHDAVAMNAIAEETGGTFSFIENQAVVQDAFAQCIGGLLSVTVQEARIAITCPHPGVRVRSVKSGRYESLVNGDGRAASVDVGELYADEERRFLVFVDVPAAGAGEDVTELIKVSCTYRDTASRQQMVVAGEHAVVQRPVEVATNTEPSIEVERERFRVEATEDIAAAQEAAERGAHAAAKAILDRRQEALARSAPGLAGDARCAALLSELRELSARVASRREYEQTGRACMLAGMSSHAQQRATSVQLFGAAAPTWSMPMCGSAAPPSLSFGGFGGFATPAMRSMLQ
Function		E3 ubiquitin-protein ligase WAV3 [UniProtKB/Swiss-Prot:Q9LTA6]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsAzu_08g0001790	OsAzu_08g0001790.01	Chr08	1553302	1556516	-	NAM
CDS seq	ATGGCATCGGCGGGAGGCCGCTGCGACGGCTGCCACGGCGACTTCGGCCTCTGGGAGCCTCCCTTGACGGCGGAGTGCTCGCACAGGTTCCACCTCCACTGCGTCGTCTCCGGCGCCGACGTCTGCCCGGCGTGCAACGCGCGATGGACCAACGCGCCATCGAACCCGCCGCCGCAACCCGCCGGAGGCAGCACGACGCCGTTTGGACAGACGACGGGCTTTCCCATGCGCGTCCGGCCATGGTCGTCGTGCGACAAATGCCGCGGCGTCATAGACCACAGCCAGCCCACCGTCACGTCCGAGTGCAGCCACACGTTCCACCTCCGCTGCTTCTCCGGGAGCGTCATCTGCCCGGCGTGCAACGCGCGGTGGCGCGACACGGTGGCCGTGCCAAACCCTTCGCCGGCGCCGCCGTCCACCTTCTTTCCCGCCGGCGTTCCCGCGCCGCCGCCGACCTTTTCGCCCTTCTGGGTGAGCCAAGAGTATGACGACGACGAGCCGGTGGAGCCGCCGGTAGCGGCACACGGTGGCGGCGTGGCACCGGCGAGCAATGGGGCGCTCGTCGTCAGGACGCACTGCGAGCACACGGCCGTGGCGAGGAGCGTGATCAGGGACAATTTCGTCGTCCTTGTCCATGCCAAAGCTCCTAGCATCGCCGTGGCGGAGGCGACGGCGGCGGCGCGCGCGCCGGTCGACCTCGTCACGGTGCTCGACGTGAGCGGCAGCATGGAAGGCTACAAGCTCACGCTCCTGAAGCGCGCCATGGGGTTCGTCATTGATAAGCTCGGCCCCGGCGACCGCCTCGCCGTCGTGTCCTTCTCCTACAATGCGCAGCGAGTGATCCGGCTGACGCGGATGTCGGACGACGGCAAGGCGTCGGCCAAGAGCGCCATGGAATCCCTCGCTGCGGGCGGCGGCACGAACATCCTCAAGGGCCTTGTCGAAGCCGCCAAGGTGTTCGACGGTCGCCGCTACCGGAACGCCGTCGCCAGCGTCATCCTTCTCTCCGACGGTCAAGACACGTACAATGTCAACGGCGGGTGGGGCGCCTCGAACTCAAAGAACTACAGTGTTCTCGTGCCGCCTTCCTTCAAGCGCTCCGGCGACCGGCGCCTGTCGGTCCACACGTTCGGCTTCGGCACCGACCACGACGCGGTGGCGATGAACGCCATCGCGGAGGAGACCGGGGGCACGTTCTCCTTCATCGAGAACCAGGCCGTCGTCCAGGACGCGTTCGCGCAGTGCATCGGCGGGCTCCTCTCGGTCACCGTGCAGGAGGCGCGCATCGCCATCACCTGCCCGCACCCCGGCGTCCGCGTCCGGTCGGTCAAGTCCGGTCGCTACGAAAGCCTCGTCAATGGGGACGGCCGGGCCGCGTCGGTGGACGTCGGCGAGCTCTACGCCGACGAGGAGAGGCGTTTCTTGGTGTTCGTGGACGTGCCAGCAGCCGGCGCCGGGGAAGACGTCACAGAACTGATCAAGGTGAGCTGCACATACCGCGACACCGCGAGTCGGCAGCAGATGGTCGTCGCCGGCGAGCACGCCGTAGTGCAAAGACCAGTGGAGGTGGCCACCAACACGGAGCCGTCCATTGAGGTGGAGCGCGAGCGTTTCCGCGTGGAGGCAACCGAAGACATCGCGGCGGCGCAAGAAGCAGCCGAGCGCGGCGCGCACGCGGCGGCGAAGGCGATACTCGACCGCCGGCAGGAGGCGCTCGCCCGGTCGGCGCCGGGTCTCGCCGGCGACGCCAGGTGCGCGGCGCTGCTGTCGGAGCTGCGCGAGCTGAGCGCCCGCGTGGCGAGCAGGCGGGAGTACGAGCAGACCGGGCGCGCGTGCATGCTCGCCGGCATGAGCTCGCACGCACAGCAGCGCGCCACGTCGGTGCAGCTGTTTGGAGCGGCGGCGCCGACGTGGTCAATGCCGATGTGTGGATCGGCGGCGCCGCCATCTCTCTCTTTCGGGGGGTTTGGAGGGTTCGCGACGCCGGCGATGCGGAGCATGCTCCAATAA More
Protein seq	MASAGGRCDGCHGDFGLWEPPLTAECSHRFHLHCVVSGADVCPACNARWTNAPSNPPPQPAGGSTTPFGQTTGFPMRVRPWSSCDKCRGVIDHSQPTVTSECSHTFHLRCFSGSVICPACNARWRDTVAVPNPSPAPPSTFFPAGVPAPPPTFSPFWVSQEYDDDEPVEPPVAAHGGGVAPASNGALVVRTHCEHTAVARSVIRDNFVVLVHAKAPSIAVAEATAAARAPVDLVTVLDVSGSMEGYKLTLLKRAMGFVIDKLGPGDRLAVVSFSYNAQRVIRLTRMSDDGKASAKSAMESLAAGGGTNILKGLVEAAKVFDGRRYRNAVASVILLSDGQDTYNVNGGWGASNSKNYSVLVPPSFKRSGDRRLSVHTFGFGTDHDAVAMNAIAEETGGTFSFIENQAVVQDAFAQCIGGLLSVTVQEARIAITCPHPGVRVRSVKSGRYESLVNGDGRAASVDVGELYADEERRFLVFVDVPAAGAGEDVTELIKVSCTYRDTASRQQMVVAGEHAVVQRPVEVATNTEPSIEVERERFRVEATEDIAAAQEAAERGAHAAAKAILDRRQEALARSAPGLAGDARCAALLSELRELSARVASRREYEQTGRACMLAGMSSHAQQRATSVQLFGAAAPTWSMPMCGSAAPPSLSFGGFGGFATPAMRSMLQ More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.000000

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_08g0126100	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os08g03270	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os08g0126100	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_08g0001780	RBH	0.0	0.0	0.000000
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_08g0001800	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_08g0001830	RBH	0.0	0.000000	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_08g0001780	RBH	0.0	0.076818	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_08g0001650	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_08G0022300	RBH	0	0.0230675	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_08g0001540	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_08G0023900	RBH	0.0073065	0.045526	0.0053025
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_08g0001730	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_08g0001710	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_08g0001630	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_08g0001720	RBH	0.0	0.0	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_08g0001650	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_08G001760	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_08g0001630	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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