Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_07g0019610 | OGI:06023730 | 10/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr07:22059631-22063019 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATACAAAGTCAACACAAATCATTAAATGGAATTTATGGCTACACAAACCGTTGAAGATAGTTCTAGACCTGGACCAAGACAAACTCGCGTAGGTAATTTATTGAAACCCTTGAATTCGGAATATGGGAAAGTAGCTCCGGGTTGGGGGACTACTCCTTTTATGGGGGTCGCAATGGCTTTATTCGCGGTATTCCTATCTATTATTTTAGAAATTTATAATTCTTCCGTTTTACTGGACGGAATTTTAATGAATTAGGTTTCTACTAACGAAAACTACGAAGTCATAGTTTTTCCATCCAAAAGAGCCTTTCTACTTTAAGCTCTACATTTCTAGACATTCTGGTAGTTCGACCGTGGAATTTTTTGGTTTCGGTATCTCTGGAATATGAGTGTGTGACTTGTTAGAATTTGCTCCTATTGATAATACATAGAAAGCACCTGTTATCTCTATCAAGATGATTCTAATTCGTCGGATATTATTTATTCTAGTATCTGGAACACGAAATAGATAGAGTGGATCAAGAAAAAAAAATGAAACTATGATTCATATTAACTATTCAGACCTCGCAACCAGACTGAAAAAAATTCAAGTAGTTCTTAATAAAAATAAAAAAAGAAAATTTCTTCCTTCCAATTTTGTTTGCCCAAAAAACAACTTTTTTTCTCTCGATTTTGTCGAGTCATTACACCGATTCAATAAATGATCATCAAGCGGTTCTTATTCGAAGAACCCTTGCCTTTTGTTTAGCTTGAGACTCAATCATCGTGGCTCTAGTATGAATCTAAGGTTTTAATTGAACTGATTCATAGGATCGCAACAAGATAATTTCTACCAGAAAACTACTCCAATTTTTGCTTTATTTATTTATCTAGTAAAACAAGAGTAAATCTGCATTACGCACAAAAAAAAGAAATCCAAAATAGGGAAGAGAAAAATCAAGAGGCCTCTAATGATCAACATTTGGGAAAGAAAGATAGACGAGCCAACTTGAGATTTTTTGGCATTATCATCACAAAGAAGAAATTATGGATTTTTCTTATTTCATATCTTCAAGGCAAATCGACCCAACCCAGTGGCTGATGAAGTTTTGAACCTTTTTTCTAATATCCGTTGAAAATTTGTGTGTTTCTGTTTGAGCCGTACGAGATGAAATTCTCATATACGGTTCTCGGAGGGGGGTTCGGGTTAGTTACCTATCTCAATAAAGTATATGATTGGTTTGAGGAACGTCTTGAGATTCAGGCAATTGCAGATGATATAACTAGTAAATATGTTCCTCCTCATGTCAACATATTTTATTGTTTAGGGGGAATTACACTTACTTGTTTTCTAGTACAAGTTGCTACCGGTTTTGCTATGACTTTTTACTATCGCCCAACCGTTACAGAGGCTTTTTCCTCGGTTCAATACATAATGACCGAGGCCAACTTTGGTTGGTTAATCCGATCAGTTCATCGATGGTCAGCAAGTATGATGGTTCTAATGATGATCCTGCACGTATTTCGTGTGTATCTCACAGGTGGGTTTAAAAAACCCCGCGAATTAACTTGGGTCACTGGTGTGGTTTTAGCTGTATTAACTGCATCGTTTGGTGTAACTGGTTATTCTTTACCTTGGGATCAAATTGGTTATTGGGCAGTCAAAATTGTGACAGGTGTGCCTGACGCGATTCCGGTAATAGGATCACCTTTAGTGGAGTTATTACGTGGAAGTGCTAGTGTGGGTCAATCCACTTTGACTCGTTTTTATAGTTTACATACCTTTGTACTTCCTCTGCTTACTGCCGTATTTATGTTAATGCACTTTCTAATGATACGTAAGCAAGGTATTTCGGGCCCTTTATAAGGAAGGCATCTCATAGAGAGTTCTAATTCTCATATATCATATCGGGTAGGTTGTGGTATTTCATTGCTACAAACATGGGTTATTCTAAAATAAGACATGTCATTTAGATACTTCTCTTCAACTCCGAACTATTGTGATACAAATAATACAAATAGTTGAAGTTAATTTTACGAAAGAAAAGAAGGCGGATTATGGGAGTGTGCGACTTGAATTATTGATTTGGCCATGCAGATAGAGAGTTGGATCTGCCACATTAGAATTCACGACCAAAGGTGTCTCCATATCCAATCAACACGTAAGTCCCCTGTCTAGTAAGGATAGGCTGGTTCACTTGAGGAGAATATTTTCTATGATCATACCTCAACCATGTCATCCATGAAGAGGCTCCGTAAGATCCCATAGAGTAGAAATGGAATAAGTCATGTGACATGATCCAATTCTCTATTTATTACACTTACTTTTTATTATAGTATGGAAATGCATTCATTTTCTTTGCATCGATTGTGATCTGCAATACTATCGGAGTAAAAGAAGGGATCTAAGGAAGAACGTAGGCTAAACTTTTTGATTTTTTATTAGTAACAAGTAAATACTTTGTTTGGACGTAAGAAACTTGCAATATTGGGGGGGATAAATACCAACTAATCAAGAGACGCGAGACAATCCACAAAGCAATTGATCATGATCAAATTTGTAAGCCCACTTGGATATTGAGCATTTACCCATAAGAGTAGGATTCTTTTCAATGAATAGTTGTAGGTGCAACTTCGGAAAATAGAATCTGATAAAGCTTTTCTTACTTAGAGCCATTGAGCCATTATATACCTTATTCTATTATGGATCTTCTACGGTTTTATTTCTTTCATTCTTGCTCGAGCCGGATGATGAAAAATTCTCATGTCCGGTTCCTTTGGGGGCTGGATCTTAAAGAATTCACCTATCCCAATAACAAAGAAACCTGACTTAAACGATCCTGTATTAAGAGCAAAATTAGCTAAAGGGATGGGACATAATTATTACGGGGAACCCGCGTGGCCCAACGATCTTTTATATATTTTTCCAGTAGTAATTCTAGGTACTATTGCATGTAATGTAGGTTTAGCGGTTCTCGAGCCGTCAATGATTGGTGAACCGGCGGATCCGTTTGCAACTCCTCTGGAAATATTACCCGAGTGGTACTTCTTTCCCGTGTTTCAAATACTCCGTACAGTACCTAATAAGTTATTGGGCGTTCTCTTAATGGTTTCTGTGCCGACGGGCTTATTGACAGTACCTTTTCTAGAGAATGTCAATAAATTCCAAAATCCATTTCGTCGCCCAGTAGCTACAACCGTTTTTTTAATCGGTACTGCAGTAGCTCTTTGGTTAGGTATTGGAGCAACATTACCCATTGAAAAATCCTTAACTTTAGGTCTTTTTTAGGGATTTTTCAGTTTGATTCATTCAATCGTGAAGTACCGTGCATAGGTATCTAGGAAATAGTTACTTCCAAGTGAATCTTCCCTAGATACCTATAATCTATTTTATTATGATCCATTTCGCG
More
|
||||||||||
| CDS seq | ATGGTCAGCAAGTATGATGGTTCTAATGATGATCCTGCACGTGGGTTTAAAAAACCCCGCGAATTAACTTGGGTCACTGGTGTGGTTTTAGCTGTATTAACTGCATCGTTTGGTGTAACTGGTTATTCTTTACCTTGGGATCAAATTGGTTATTGGGCAGTCAAAATTGTGACAGGTGTGCCTGACGCGATTCCGTTTACATACCTTTGTACTTCCTCTGCTTACTGCCGTATTTATGTTAATGCACTTTCTAATGATACGTAA |
||||||||||
| Protein seq | MVSKYDGSNDDPARGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPFTYLCTSSAYCRIYVNALSNDT |
||||||||||
| Function | Cytochrome b6 [UniProtKB/Swiss-Prot:Q2PMQ5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_07g0019610 | OsAzu_07g0019610.01 | Chr07 | 22061089 | 22061451 | + | NAM | ||
| CDS seq | ATGGTCAGCAAGTATGATGGTTCTAATGATGATCCTGCACGTGGGTTTAAAAAACCCCGCGAATTAACTTGGGTCACTGGTGTGGTTTTAGCTGTATTAACTGCATCGTTTGGTGTAACTGGTTATTCTTTACCTTGGGATCAAATTGGTTATTGGGCAGTCAAAATTGTGACAGGTGTGCCTGACGCGATTCCGTTTACATACCTTTGTACTTCCTCTGCTTACTGCCGTATTTATGTTAATGCACTTTCTAATGATACGTAA
More
|
|||||||
| Protein seq | MVSKYDGSNDDPARGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPFTYLCTSSAYCRIYVNALSNDT |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_07g0019610 | OsAzu_07g0019610.02 | Chr07 | 22059631 | 22063019 | + | IsoSeq | ||
| CDS seq | ACAAAGTCAACACAAATCATTAAATGGAATTTATGGCTACACAAACCGTTGAAGATAGTTCTAGACCTGGACCAAGACAAACTC |
|||||||
| Protein seq | TKSTQIIKWNLWLHKPLKIVLDLDQDKL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 227.094589 | 7.678259 | 79.034019 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035860 | RBH | 516.208984 | 35.845612 | 601.950195 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006730 | SBH | 70.395493 | 0.498259 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0008440 | RBH | 6577.612305 | 172.266373 | 4283.900879 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0140600 | SBH | 4151.807251 | 321.1246795 | 149.580002 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014170 | SBH | 97.354736 | 0.0 | 36.148006 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006610 | SBH | 448.440643 | 26.425066 | 453.750824 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
