Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsAzu_07g0005820 OGI:07010110 | 16/16 Azucena | AzucenaRS1 | Gramene(+IsoSeq) Chr07:4826742-4829603
Gene Symbol -
DNA seq

GATGAAAAGGTATTTTTTATTACATGACACTAAACATAAACCAGTTCACTTCTGATTGTACCAAGGGCGCCGGTAGACCACTATGGCACATTTTATTAATCTACACATACTTGAAGGTCTAGTAGGCGAACTCCCTAGTCCATACTGCATTACCAAACAACATACAAATATACCCTAATATAGACTGCAAACAAGCTCTTAAGTATATTACAACAATATAGAAGGACATTTATTCCAATATGTACATAAGGAGCAATACTCGGCAATATGAGTAGACAATAACTGGATGCTGTGCCGAAGATGTTGTAGTAGGTTATTGACGGGTGCATATCAGCAAACTGTGAGCTCAATCATCACTGTAATTGCAAAAAATACAACTTTTAATCATTGTATCTTATCTAAATCATTGTGTTATTATTTAAATATGGTCAGCCACTAATACCATATAAACTAACCGAGTTACCTTGCCTTCACTTTTTTCGTGGAGAATAGTTCCTTGCGAGTAGACCTAGATCGTTTCCCAACCGGAGTTCTACGGCATAAATATCTAGCATTACAAGATAGTCCAAAGGAATAATAAATGCATAGGATGATATTTTTTAACTATAAGATGAGTCTATTATGAGGCTGTAACAACATATTAATTACATGTAGCTTGAGAAGTAGCAATATGGTGCATACCCATGTTCTTCAGAAATCTCATTCCCCTTCTGTGGTGATGTTTTTGTGATAGCCCCATGAGCAAAAGGAGGTGGTGGAGTGGCGCTTCCTTTAGGATCTGTTGGGAGTTCAGTTACACCATATGTCTGCAAGGTGGATGCTTTGTTGGAGCTACTCCCCGATGCCTCCATTAAAGGGGTAGGATCACATTTCTTTTGAGCACCTGACGTTCTAGCTAAGGTTGCATGGCTAAGACTATTTCCAAGAGTGGCATGAACACCATTGTTTTGCCCATCGATTGGGGGTGGATTAAACACTTTCCTTACTTGAAAGCACAATTGTCCAGTCCGAAAGGTCTGCTCACTTATAACTATTTGGAAAACAAACCTACGGCCAATGAGAGCACGGAGGGGTGACGGCAGTAAGAGCTGATTGGCTGAGCTTTCTTCAACTAGATCGGCAGCTGTTCGTCGCACAACTTGCTCCGCCATACCACCAAACATGAATATTTTTGCACGGTCAGTGTTGTCCTCAATCACAACATTTAACTTATAGCTGCATAGTGAATAAAAGTCAGCAAATTTAAGGAGGACAAGTTACCCTTTCATGTGTTACACCGTAATTAAAAATAAGCAATACCTGGGTGTGATTATTGGCTCTGTGTTGTCACAGTTAACACATTCAAATCCTTGAAGAGTTGGCTTCACACCCTTTCTACAAATACTGCAAGCCTTATACCACCAACCACTTGAGACATCAATTTCCTTTATACGTGCGTCACAAGTGAAGCGTACATCCTAAAACAAAATAGAGGACCAATTTCAAAATAATATATATTACATAAAAGTTTAAACTATACCTATCTTCAAAGCACGCTTACGTTGTTGTCATGAGGATTCAAGGATAAAAGCTCGGATATAGACTTCCTATTAGCATCTGCCTCGTTAGCCGCTCCTAGTGCAGCACCATCACTAGGTACGAGAAGAACCTCGCAACCTCTTCCTTGCAGGCTGAATAAACACATAATGATGCGGAAATTACATCATGGGCAAATATTGTGCCATATATAGTAACCAAATAAAGTGCATACATTACCTTGTACGAAAGGCATTAATCTCCGGAATATCAATGTTAATGTACCATTTTGTGGCAGCACTGCTCCGGCAACTTGGAGCACCTATGTATTTATAAACACACATATGTTTGTTTACAACTATCATCTAATTTTATAGCATGAATCAACAACGCACGGCATGATATAGACTAAAGCTCACCTGAGAATAGTTTCATATTAAGGCCAGCAAAAACAATTATGACTGGTTCATCTTTACCAATAGTTTCAATAAGGAACTCATCTTCAAAAGAAGTTGCATGCTCAGCCCATAAAGTGATCTCCAAGAGCCGATCGCTGTAAAATTATTGGTAAGAAACACTACGCTATTTTTTCGAAACCAAAAGGCATGAACAAAAATAATTTGTGAGAAAACAAACCTAAGGTCTCGTAATTCCACATTCCGCCTAACAGATGGCCCATTCAAACCGTTGCTTTGTACTAGAGGGTGCACAACCGTGAGTTGTCCAATAACATCTTTTAAAAAAAACAAAAGGAACCTATGTCATTGACTATAAAAATAACAAAAGTAGATGGGAAAATAAAAATATAATACTAAAAAGGGTCGAAATCCATACCTACTAAACCATTTGGATGCCTTGCCCTTTCATCCAAATCCTCAAAGTCCACGAAATTAAAAATGTAGAGTGGAAGACTGCCAGATATCTCTGTAGGGATCTCTTCAACAATAGTCCATGGTGTAAAAAAGATGGCATATGTGCTAGGCACAGCATTGAGCTTTTTTGTCTGTCTACTAACACGGAAATTCCGTAAGAAGTAGGCATGTCCCTCCACTATAGACGTTGAAAACTTCTGTATTTCATTTTCTCCCACACAAGCTGTAATGCCTACCCCCTAAGAAATTAAATCCATACCATGGAAAATAAAAATAATGTCATCCATGTCCTGTAAATAAACTGATATAATTAATATGATCAATTTTGTACCTCTTCATCGACCAAGATAAGTTCCAAAGCAGTAAAATCTCTTCTTTTGGAAGTTCCAGATAGATGCCATGACCTAGCAACTCTGACCTTTATACGCCAATTATGCCTGGTGGAATTAATTTGTGATAGCAGACTGTACTCCAT

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CDS seq

ATGGAGTACAGTCTGCTATCACAAATTAATTCCACCAGGCATAATTGGCGTATAAAGGTCAGAGTTGCTAGGTCATGGCATCTATCTGGAACTTCCAAAAGAAGAGATTTTACTGCTTTGGAACTTATCTTGGTCGATGAAGAGGGGGTAGGCATTACAGCTTGTGTGGGAGAAAATGAAATACAGAAGTTTTCAACGTCTATAGTGGAGGGACATGCCTACTTCTTACGGAATTTCCGTGTTAGTAGACAGACAAAAAAGCTCAATGCTGTGCCTAGCACATATGCCATCTTTTTTACACCATGGACTATTGTTGAAGAGATCCCTACAGAGATATCTGGCAGTCTTCCACTCTACATTTTTAATTTCGTGGACTTTGAGGATTTGGATGAAAGGGCAAGGCATCCAAATGGTTTAGTAGATGTTATTGGACAACTCACGGTTGTGCACCCTCTAGTACAAAGCAACGGTTTGAATGGGCCATCTGTTAGGCGGAATGTGGAATTACGAGACCTTAGCGATCGGCTCTTGGAGATCACTTTATGGGCTGAGCATGCAACTTCTTTTGAAGATGAGTTCCTTATTGAAACTATTGGTAAAGATGAACCAGTCATAATTGTTTTTGCTGGCCTTAATATGAAACTATTCTCAGGTGCTCCAAGTTGCCGGAGCAGTGCTGCCACAAAATGGTACATTAACATTGATATTCCGGAGATTAATGCCTTTCGTACAAGCCTGCAAGGAAGAGGTTGCGAGGTTCTTCTCGTACCTAGTGATGGTGCTGCACTAGGAGCGGCTAACGAGGCAGATGCTAATAGGAAGTCTATATCCGAGCTTTTATCCTTGAATCCTCATGACAACAACGATGTACGCTTCACTTGTGACGCACGTATAAAGGAAATTGATGTCTCAAGTGGTTGGTGGTATAAGGCTTGCAGTATTTGTAGAAAGGGTGTGAAGCCAACTCTTCAAGGATTTGAATGTGTTAACTGTGACAACACAGAGCCAATAATCACACCCAGCTATAAGTTAAATGTTGTGATTGAGGACAACACTGACCGTGCAAAAATATTCATGTTTGGTGGTATGGCGGAGCAAGTTGTGCGACGAACAGCTGCCGATCTAGTTGAAGAAAGCTCAGCCAATCAGCTCTTACTGCCGTCACCCCTCCGTGCTCTCATTGGCCGTAGGTTTGTTTTCCAAATAGTTATAAGTGAGCAGACCTTTCGGACTGGACAATTGTGCTTTCAAGTAAGGAAAGTGTTTAATCCACCCCCAATCGATGGGCAAAACAATGGTGTTCATGCCACTCTTGGAAATAGTCTTAGCCATGCAACCTTAGCTAGAACGTCAGGTGCTCAAAAGAAATGTGATCCTACCCCTTTAATGGAGGCATCGGGGAGTAGCTCCAACAAAGCATCCACCTTGCAGACATATGGTGTAACTGAACTCCCAACAGATCCTAAAGGAAGCGCCACTCCACCACCTCCTTTTGCTCATGGGGCTATCACAAAAACATCACCACAGAAGGGGAATGAGATTTCTGAAGAACATGGAACTCCGGTTGGGAAACGATCTAGGTCTACTCGCAAGGAACTATTCTCCACGAAAAAAGTGAAGGCAAGTGATGATTGA

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Protein seq

MEYSLLSQINSTRHNWRIKVRVARSWHLSGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKLNAVPSTYAIFFTPWTIVEEIPTEISGSLPLYIFNFVDFEDLDERARHPNGLVDVIGQLTVVHPLVQSNGLNGPSVRRNVELRDLSDRLLEITLWAEHATSFEDEFLIETIGKDEPVIIVFAGLNMKLFSGAPSCRSSAATKWYINIDIPEINAFRTSLQGRGCEVLLVPSDGAALGAANEADANRKSISELLSLNPHDNNDVRFTCDARIKEIDVSSGWWYKACSICRKGVKPTLQGFECVNCDNTEPIITPSYKLNVVIEDNTDRAKIFMFGGMAEQVVRRTAADLVEESSANQLLLPSPLRALIGRRFVFQIVISEQTFRTGQLCFQVRKVFNPPPIDGQNNGVHATLGNSLSHATLARTSGAQKKCDPTPLMEASGSSSNKASTLQTYGVTELPTDPKGSATPPPPFAHGAITKTSPQKGNEISEEHGTPVGKRSRSTRKELFSTKKVKASDD

Function Replication protein A 70 kDa DNA-binding subunit B [UniProtKB/Swiss-Prot:Q9SD82]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsAzu_07g0005820 OsAzu_07g0005820.01 Chr07 4826742 4829603 - NAM
CDS seq

ATGGAGTACAGTCTGCTATCACAAATTAATTCCACCAGGCATAATTGGCGTATAAAGGTCAGAGTTGCTAGGTCATGGCATCTATCTGGAACTTCCAAAAGAAGAGATTTTACTGCTTTGGAACTTATCTTGGTCGATGAAGAGGGGGTAGGCATTACAGCTTGTGTGGGAGAAAATGAAATACAGAAGTTTTCAACGTCTATAGTGGAGGGACATGCCTACTTCTTACGGAATTTCCGTGTTAGTAGACAGACAAAAAAGCTCAATGCTGTGCCTAGCACATATGCCATCTTTTTTACACCATGGACTATTGTTGAAGAGATCCCTACAGAGATATCTGGCAGTCTTCCACTCTACATTTTTAATTTCGTGGACTTTGAGGATTTGGATGAAAGGGCAAGGCATCCAAATGGTTTAGTAGATGTTATTGGACAACTCACGGTTGTGCACCCTCTAGTACAAAGCAACGGTTTGAATGGGCCATCTGTTAGGCGGAATGTGGAATTACGAGACCTTAGCGATCGGCTCTTGGAGATCACTTTATGGGCTGAGCATGCAACTTCTTTTGAAGATGAGTTCCTTATTGAAACTATTGGTAAAGATGAACCAGTCATAATTGTTTTTGCTGGCCTTAATATGAAACTATTCTCAGGTGCTCCAAGTTGCCGGAGCAGTGCTGCCACAAAATGGTACATTAACATTGATATTCCGGAGATTAATGCCTTTCGTACAAGCCTGCAAGGAAGAGGTTGCGAGGTTCTTCTCGTACCTAGTGATGGTGCTGCACTAGGAGCGGCTAACGAGGCAGATGCTAATAGGAAGTCTATATCCGAGCTTTTATCCTTGAATCCTCATGACAACAACGATGTACGCTTCACTTGTGACGCACGTATAAAGGAAATTGATGTCTCAAGTGGTTGGTGGTATAAGGCTTGCAGTATTTGTAGAAAGGGTGTGAAGCCAACTCTTCAAGGATTTGAATGTGTTAACTGTGACAACACAGAGCCAATAATCACACCCAGCTATAAGTTAAATGTTGTGATTGAGGACAACACTGACCGTGCAAAAATATTCATGTTTGGTGGTATGGCGGAGCAAGTTGTGCGACGAACAGCTGCCGATCTAGTTGAAGAAAGCTCAGCCAATCAGCTCTTACTGCCGTCACCCCTCCGTGCTCTCATTGGCCGTAGGTTTGTTTTCCAAATAGTTATAAGTGAGCAGACCTTTCGGACTGGACAATTGTGCTTTCAAGTAAGGAAAGTGTTTAATCCACCCCCAATCGATGGGCAAAACAATGGTGTTCATGCCACTCTTGGAAATAGTCTTAGCCATGCAACCTTAGCTAGAACGTCAGGTGCTCAAAAGAAATGTGATCCTACCCCTTTAATGGAGGCATCGGGGAGTAGCTCCAACAAAGCATCCACCTTGCAGACATATGGTGTAACTGAACTCCCAACAGATCCTAAAGGAAGCGCCACTCCACCACCTCCTTTTGCTCATGGGGCTATCACAAAAACATCACCACAGAAGGGGAATGAGATTTCTGAAGAACATGGAACTCCGGTTGGGAAACGATCTAGGTCTACTCGCAAGGAACTATTCTCCACGAAAAAAGTGAAGGCAAGTGATGATTGA

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Protein seq

MEYSLLSQINSTRHNWRIKVRVARSWHLSGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKLNAVPSTYAIFFTPWTIVEEIPTEISGSLPLYIFNFVDFEDLDERARHPNGLVDVIGQLTVVHPLVQSNGLNGPSVRRNVELRDLSDRLLEITLWAEHATSFEDEFLIETIGKDEPVIIVFAGLNMKLFSGAPSCRSSAATKWYINIDIPEINAFRTSLQGRGCEVLLVPSDGAALGAANEADANRKSISELLSLNPHDNNDVRFTCDARIKEIDVSSGWWYKACSICRKGVKPTLQGFECVNCDNTEPIITPSYKLNVVIEDNTDRAKIFMFGGMAEQVVRRTAADLVEESSANQLLLPSPLRALIGRRFVFQIVISEQTFRTGQLCFQVRKVFNPPPIDGQNNGVHATLGNSLSHATLARTSGAQKKCDPTPLMEASGSSSNKASTLQTYGVTELPTDPKGSATPPPPFAHGAITKTSPQKGNEISEEHGTPVGKRSRSTRKELFSTKKVKASDD

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0190600 RBH 0.0 0.0 0.338981
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g02230 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os07g0190600 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0005780 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0005690 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0005610 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0005780 RBH 0.0 0.0 1.508445
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0082600 RBH 0.02739 0.0245125 4.8237575
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0006290 RBH 0.0 0.000000 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0084500 RBH 0.159926 0.0900145 2.2281735
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0005710 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0005710 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0005750 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_Ung0039160 RBH 0.0 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0005730 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G005900 RBH 0.0 0.0 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0005700 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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