Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_06g0018980 | OGI:06057770 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr06:20834918-20836525 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAAATGGAGCTCCACCCCTTTGCAGCAGGAAGAGGAGGAATACTCTGCTCATTCCTGAAGAAATCATCAGGATCAACCATGGCCTTCACCGCCGCCAACCTCTCGAAATTGCCCCTGAAATACTTCTCCCCCCAAACCTTACCCTTCGTGTAGCTCGTCACATTCCCCTCGATCTCATTCCTCCCAAGATCCATGTCCCTGTAGTTGACATACCCAGTTCTTGGGTTCTTGGACACGTACGGCTCCATCTCGCCATACAGCCCCCTGACCCAGCTCAGATGCCTCTCCAATGTCTCTGCTCTGTGCTCGAACCAGAACGAGTAGTACTGGAGGTTGTACAGGTTGCCCTTCCGGTGCGGGAACGGCGTCGCCGCCGGCGAGACGCGGGCCATCTCGCCGCCGTAGGGGTCGAGGATGAGCAGCCCGGCGTCGTGCTCCTCCAGCCATGGCCATGTGCTCTCCCAGGCGTGGCGTGGGATGGGTTCTTGGACGTAGTCGGATTTGGCCTTGAAGTATCTGTCCGGCTCGGTGCCCCTGTCCAGGAGGAGCTCCAGTGGCTTGGAGCTGGAGTAGAAGGCGAAGTAGACGGTGGATTGGATCCAGGTGATCTCCTCGCAGTCGGACTGCGTCATCCCGAGCTCCGGGAAGCGAGCTCGCATGAGGCGGGCGAGGCGGCGGCACCGGCCGAGGAACAGGGACTCGAACTGCGCGTGCTGGCTCTGCACGACGACGCGGAGGATGACGTCTCGGGGCAGTGAGGGGGAGATCTCTTGCCATTTGGTGATGAGGTCGGTGGCGGATTGGTTTCTCGGGCGGCGGATGGTGAACACGGTGACCGTCTCCGGGACGCGGACCAGCCGCAGCTTCCAGGACAGCACGACGCCGAAGCTCTCGCCGCCGCCGCCCCTGATTGCCCAGAAGAGGCCCTCCCCCATGGTGGTCCTGTTCAGGAGCCGGCCGTCGGCGTCCACGAGGACGGCGTCGAGGACGTTGTCCGCGGCGAGGCCGTACCTGCGCATCAGCGTGCCGAATCCCCCGCCGCTGATGTGGCCCCCGACGCCGACGGTCGGGCAGACACCGGCCGGGAACGCGAGAGTGCGGCTCGCGGCGCCCACCGCGTAGTAGAGCTCGCCGAGCGTGGCGCCCGACCCGACCCACGCCTCGGCGCGATCGGCGTCCACGCGGACGTCGCGGAGCGCGGCGAGGTCGAGCACCGCGAACCGCTCGCGGCGGTCGAGGGAGAGGTAGGAGAGGCCCTCGTAGTCGTGCCCGCCGCTGCGCGCGCGGACGCGGACCCCGTGGCGCCGGCCGCACCGCACCGCGGCCTGGGCGTGGCCCGCCTCGGCGGCCGCGACGATGGCGAGCGGCCTCGGCGTCCCCGGCGTGACGAAGCGGAGGTTCCGGATGGAGGAGACGAGCGTCGGGGCGTAGGACGCGGAGCCCGGGGTGTGGACCAGCCGTGGCGGGACAGCGGCGGCGGCGAGGCAGCGGATGAACGCGTCGTCATCGCCGGCGGCGAATCCGGCGATGCCGCTGCTGCAGGAGATAGCGAGGGTGCAGAGGATCAGGACGAGCCGGCGCGATGCTGCCGTTGGCGTCGTTGACAT
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| CDS seq | ATGTCAACGACGCCAACGGCAGCATCGCGCCGGCTCGTCCTGATCCTCTGCACCCTCGCTATCTCCTGCAGCAGCGGCATCGCCGGATTCGCCGCCGGCGATGACGACGCGTTCATCCGCTGCCTCGCCGCCGCCGCTGTCCCGCCACGGCTGGTCCACACCCCGGGCTCCGCGTCCTACGCCCCGACGCTCGTCTCCTCCATCCGGAACCTCCGCTTCGTCACGCCGGGGACGCCGAGGCCGCTCGCCATCGTCGCGGCCGCCGAGGCGGGCCACGCCCAGGCCGCGGTGCGGTGCGGCCGGCGCCACGGGGTCCGCGTCCGCGCGCGCAGCGGCGGGCACGACTACGAGGGCCTCTCCTACCTCTCCCTCGACCGCCGCGAGCGGTTCGCGGTGCTCGACCTCGCCGCGCTCCGCGACGTCCGCGTGGACGCCGATCGCGCCGAGGCGTGGGTCGGGTCGGGCGCCACGCTCGGCGAGCTCTACTACGCGGTGGGCGCCGCGAGCCGCACTCTCGCGTTCCCGGCCGGTGTCTGCCCGACCGTCGGCGTCGGGGGCCACATCAGCGGCGGGGGATTCGGCACGCTGATGCGCAGGTACGGCCTCGCCGCGGACAACGTCCTCGACGCCGTCCTCGTGGACGCCGACGGCCGGCTCCTGAACAGGACCACCATGGGGGAGGGCCTCTTCTGGGCAATCAGGGGCGGCGGCGGCGAGAGCTTCGGCGTCGTGCTGTCCTGGAAGCTGCGGCTGGTCCGCGTCCCGGAGACGGTCACCGTGTTCACCATCCGCCGCCCGAGAAACCAATCCGCCACCGACCTCATCACCAAATGGCAAGAGATCTCCCCCTCACTGCCCCGAGACGTCATCCTCCGCGTCGTCGTGCAGAGCCAGCACGCGCAGTTCGAGTCCCTGTTCCTCGGCCGGTGCCGCCGCCTCGCCCGCCTCATGCGAGCTCGCTTCCCGGAGCTCGGGATGACGCAGTCCGACTGCGAGGAGATCACCTGGATCCAATCCACCGTCTACTTCGCCTTCTACTCCAGCTCCAAGCCACTGGAGCTCCTCCTGGACAGGGGCACCGAGCCGGACAGATACTTCAAGGCCAAATCCGACTACGTCCAAGAACCCATCCCACGCCACGCCTGGGAGAGCACATGGCCATGGCTGGAGGAGCACGACGCCGGGCTGCTCATCCTCGACCCCTACGGCGGCGAGATGGCCCGCGTCTCGCCGGCGGCGACGCCGTTCCCGCACCGGAAGGGCAACCTGTACAACCTCCAGTACTACTCGTTCTGGTTCGAGCACAGAGCAGAGACATTGGAGAGGCATCTGAGCTGGGTCAGGGGGCTGTATGGCGAGATGGAGCCGTACGTGTCCAAGAACCCAAGAACTGGGTATGTCAACTACAGGGACATGGATCTTGGGAGGAATGAGATCGAGGGGAATGTGACGAGCTACACGAAGGGTAAGGTTTGGGGGGAGAAGTATTTCAGGGGCAATTTCGAGAGGTTGGCGGCGGTGAAGGCCATGGTTGATCCTGATGATTTCTTCAGGAATGAGCAGAGTATTCCTCCTCTTCCTGCTGCAAAGGGGTGGAGCTCCATTTAA
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| Protein seq | MSTTPTAASRRLVLILCTLAISCSSGIAGFAAGDDDAFIRCLAAAAVPPRLVHTPGSASYAPTLVSSIRNLRFVTPGTPRPLAIVAAAEAGHAQAAVRCGRRHGVRVRARSGGHDYEGLSYLSLDRRERFAVLDLAALRDVRVDADRAEAWVGSGATLGELYYAVGAASRTLAFPAGVCPTVGVGGHISGGGFGTLMRRYGLAADNVLDAVLVDADGRLLNRTTMGEGLFWAIRGGGGESFGVVLSWKLRLVRVPETVTVFTIRRPRNQSATDLITKWQEISPSLPRDVILRVVVQSQHAQFESLFLGRCRRLARLMRARFPELGMTQSDCEEITWIQSTVYFAFYSSSKPLELLLDRGTEPDRYFKAKSDYVQEPIPRHAWESTWPWLEEHDAGLLILDPYGGEMARVSPAATPFPHRKGNLYNLQYYSFWFEHRAETLERHLSWVRGLYGEMEPYVSKNPRTGYVNYRDMDLGRNEIEGNVTSYTKGKVWGEKYFRGNFERLAAVKAMVDPDDFFRNEQSIPPLPAAKGWSSI |
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| Function | Berberine bridge enzyme-like Cyn d 4 [UniProtKB/Swiss-Prot:Q5QJ60] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_06g0018980 | OsAzu_06g0018980.01 | Chr06 | 20834918 | 20836525 | - | NAM | ||
| CDS seq | ATGTCAACGACGCCAACGGCAGCATCGCGCCGGCTCGTCCTGATCCTCTGCACCCTCGCTATCTCCTGCAGCAGCGGCATCGCCGGATTCGCCGCCGGCGATGACGACGCGTTCATCCGCTGCCTCGCCGCCGCCGCTGTCCCGCCACGGCTGGTCCACACCCCGGGCTCCGCGTCCTACGCCCCGACGCTCGTCTCCTCCATCCGGAACCTCCGCTTCGTCACGCCGGGGACGCCGAGGCCGCTCGCCATCGTCGCGGCCGCCGAGGCGGGCCACGCCCAGGCCGCGGTGCGGTGCGGCCGGCGCCACGGGGTCCGCGTCCGCGCGCGCAGCGGCGGGCACGACTACGAGGGCCTCTCCTACCTCTCCCTCGACCGCCGCGAGCGGTTCGCGGTGCTCGACCTCGCCGCGCTCCGCGACGTCCGCGTGGACGCCGATCGCGCCGAGGCGTGGGTCGGGTCGGGCGCCACGCTCGGCGAGCTCTACTACGCGGTGGGCGCCGCGAGCCGCACTCTCGCGTTCCCGGCCGGTGTCTGCCCGACCGTCGGCGTCGGGGGCCACATCAGCGGCGGGGGATTCGGCACGCTGATGCGCAGGTACGGCCTCGCCGCGGACAACGTCCTCGACGCCGTCCTCGTGGACGCCGACGGCCGGCTCCTGAACAGGACCACCATGGGGGAGGGCCTCTTCTGGGCAATCAGGGGCGGCGGCGGCGAGAGCTTCGGCGTCGTGCTGTCCTGGAAGCTGCGGCTGGTCCGCGTCCCGGAGACGGTCACCGTGTTCACCATCCGCCGCCCGAGAAACCAATCCGCCACCGACCTCATCACCAAATGGCAAGAGATCTCCCCCTCACTGCCCCGAGACGTCATCCTCCGCGTCGTCGTGCAGAGCCAGCACGCGCAGTTCGAGTCCCTGTTCCTCGGCCGGTGCCGCCGCCTCGCCCGCCTCATGCGAGCTCGCTTCCCGGAGCTCGGGATGACGCAGTCCGACTGCGAGGAGATCACCTGGATCCAATCCACCGTCTACTTCGCCTTCTACTCCAGCTCCAAGCCACTGGAGCTCCTCCTGGACAGGGGCACCGAGCCGGACAGATACTTCAAGGCCAAATCCGACTACGTCCAAGAACCCATCCCACGCCACGCCTGGGAGAGCACATGGCCATGGCTGGAGGAGCACGACGCCGGGCTGCTCATCCTCGACCCCTACGGCGGCGAGATGGCCCGCGTCTCGCCGGCGGCGACGCCGTTCCCGCACCGGAAGGGCAACCTGTACAACCTCCAGTACTACTCGTTCTGGTTCGAGCACAGAGCAGAGACATTGGAGAGGCATCTGAGCTGGGTCAGGGGGCTGTATGGCGAGATGGAGCCGTACGTGTCCAAGAACCCAAGAACTGGGTATGTCAACTACAGGGACATGGATCTTGGGAGGAATGAGATCGAGGGGAATGTGACGAGCTACACGAAGGGTAAGGTTTGGGGGGAGAAGTATTTCAGGGGCAATTTCGAGAGGTTGGCGGCGGTGAAGGCCATGGTTGATCCTGATGATTTCTTCAGGAATGAGCAGAGTATTCCTCCTCTTCCTGCTGCAAAGGGGTGGAGCTCCATTTAA
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| Protein seq | MSTTPTAASRRLVLILCTLAISCSSGIAGFAAGDDDAFIRCLAAAAVPPRLVHTPGSASYAPTLVSSIRNLRFVTPGTPRPLAIVAAAEAGHAQAAVRCGRRHGVRVRARSGGHDYEGLSYLSLDRRERFAVLDLAALRDVRVDADRAEAWVGSGATLGELYYAVGAASRTLAFPAGVCPTVGVGGHISGGGFGTLMRRYGLAADNVLDAVLVDADGRLLNRTTMGEGLFWAIRGGGGESFGVVLSWKLRLVRVPETVTVFTIRRPRNQSATDLITKWQEISPSLPRDVILRVVVQSQHAQFESLFLGRCRRLARLMRARFPELGMTQSDCEEITWIQSTVYFAFYSSSKPLELLLDRGTEPDRYFKAKSDYVQEPIPRHAWESTWPWLEEHDAGLLILDPYGGEMARVSPAATPFPHRKGNLYNLQYYSFWFEHRAETLERHLSWVRGLYGEMEPYVSKNPRTGYVNYRDMDLGRNEIEGNVTSYTKGKVWGEKYFRGNFERLAAVKAMVDPDDFFRNEQSIPPLPAAKGWSSI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.859195 | 0.339557 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0548100 | RBH | 0.540470 | 0.988690 | 0.336937 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g35550 | RBH | 0.111443 | 0.113574 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0548100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010100 | RBH | 0.593614 | 18.545162 | 4.433385 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0018830 | RBH | 0.159254 | 1.911132 | 0.239142 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0018880 | RBH | 0.0 | 4.154853 | 0.800327 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0018750 | SBH | 0.219029 | 0.051859 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0019100 | RBH | 2.054273 | 2.578079 | 1.754789 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0327600 | RBH | 0.782995 | 1.7295575 | 1.2051685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0018590 | SBH | 0.186871 | 0.556461 | 0.489067 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0302400 | RBH | 1.035562 | 3.2234785 | 2.3852645 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0019020 | RBH | 0.293339 | 0.238963 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0018960 | SBH | 1.657038 | 3.653666 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0018610 | RBH | 0.704629 | 17.000525 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0019340 | SBH | 0.110579 | 0.482827 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0018800 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G018730 | RBH | 0.054178 | 0.272498 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0018890 | RBH | 1.847255 | 1.211113 | 0.449808 |
