Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_06g0013680 | OGI:05034160 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr06:12505765-12509217 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGACGGCGCGGATTGGGGGAGGCGTGGAGGCGGGCGATCAGGCGGAGATCGGGGGCGGCAAGGGCGCGGAGGAGATCGGCGAGGAAGGCGTCGCTAGTGACGCCGGCGGGAGAGATCGTCGCGGACTGGTGGACGACCTGGTGAGAGATGAGAGCGGCCGGTGATGGTTAAGGGAGGGATGAGAGCGCGCGGAGGAGATTTGCGAGGGCGGCGGCGAGGGAGCGTCTGGAGAGGCGGCCGACGGCCGTGGCTGCCGAGGAGGCGATGCGGTGGTGAGGTGAGGAGGCGACGCCGGGAGGAGGGCGAAGGTGGAGGATCAATCCGATGCGAGGTGGAGGCGCGGAGGAGATTGGAGAGGGCGGCGGCGATCGCGCGTCTGGTGAGGAGGCCGGCGGGCGTGGAGGAGGCGACACGGAGGCGGGGCGAGGAGGCGACGTAGAGAGGAGAGCGAACGACGCGGCTTGGGGGAAAGGAGGAGAGGAGCGATCGCGTGATGGGGAGGAGATCGACGCCGTTCGATATGGCAATCGGATGGTTGAGATTGCGCGTGTCTGTCAGATGCGTCTGCTGTGTCAGGAATCAAGACCACCACTACAGATTTTTTAAGTAGTCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATCAATGACTCCCGCCGTATGAAAGCAATACTCTAACCACTTAGTTAAGTAGGCAATTTATCACCACAAAGGAAGACCCTTTACTTCGATCGATTATAGATCGAATCCTTTTTATAAGCAAATACCGCTTCGTTATTGGTATGTTATTATAGTAAACAGATCAAAGGATATCCTCTACTATTCGAGAATATTCATCTTGACAAGAAATTCTCTATATATTAAGATATCTCTGACAAGGGCTATAGCTCAGTTCGGTAGAGCAACTCGTTTACACGTGCGCCAATGCTTTTCAAGGGAGCTTATTATGCAATGAACATAGTGGATCTTCTTGCAAAATCAATGTCTTCATGGATTCGAGAGAATAGGAGAACAGTCGCCTGACAAATAGTTGGTTCAGTCCGATTCAGGTACCAATCCAGGTGCCTAAACAAATAGAACCTTTATTGATTTGCTAGTTGATAAGGTAAATATCCAGCCCACTAAATGCTAGGCTTAATGAGGATAAGAGCCTCCAAAAAAATTCTTTTCGTTCTACGAACTTTAAGGTATATGAAGTCTCATAGTCAACTCTTGTAGCGGAACGATAGAGACTCTATTTCACTTAGGTTGATTTAATTTAGGCTGGAGGCAGACCTAAGTCAAGGTAATCCTCCTTTGAAACACTTTGGTATTGCTCTTAGATAGATCATAATACAAATAATCAATCAGAGCGCAGGGAGCCATCTCATTATCTTTCCGTAAAGAAAAACTATGGTGGACTAACTGATCTTTCTATCAGTTGATAAAAGAGCCCAATGCAAAAAAAATGCATGTTGGGTCTTTGAAACAGTTCGAATCATTTCGATAATAATCTGTTTGGTCTGTTTTACCGAGAAGGTCTATGGTTCGAATCCGTATAGCCCTAATATGTCCTTTTTTAGATTTTAGGAGAGATATCCTATGTTGTTTCCTTTAGTACAGTTTTCATTTCCCTATTAGTACTTGTTTATAGACTGGACAGGCGCCTGCGCCGTAAAATAGAGATAAAAGGATTACCAGAGGCTCATTCATCGAAAATTATAGAGACAGGAAAAGAAAAATGAATTTCTATCAAATCAACTACAAGATGTTCTCCATCTTGCGAATTCCTACTTTGTTTGAAGTATATTACTTTGCTTATCTATATCTATAGATTACCTAAATCTAAATCGATCTACGTTCTGAAATAGAGTTCTTTATTTTTATAGAATTACTCCTCATTAGGCTGCATACATTAGTCATCCTATCTTAATTAGGCTCTAATTCGTAGTATTTTCGTTTTTATTCCTTTTTCTAGAGATTCTAGAGAAAATGAGACAAAGTGAAGCGAGAGAGTTTTGTTTCTATAAGAATTATGTCTCCACCATACCTAAATAGAAAGGAAATCAAAAAGAAAGGGAGTCAGGATTCCATTGGATGAATCTTTAAAGAAGACGTGGCAAAGAGGAAACAAAGGCTAAACTAAGCCCTTTGGTTTGAGAAAAACCGATCCTTGTTTCACCGAGGAAAAGAGAGAAATTCTGTATAAATTGACAATGCTGACTTGAATTGACTAATTCAGTTCCGCCTATTCCACATTAATGGGAGTACATTTATGTTTCTGCTTCATGAATATGATATTTTTTGGGCATTTCTAATAATAGCAAGCCTTATTCCTATTTTTTAGCATTTTGGATTTCAGCACTTTTAGCTCCGGTTCGTGAAGGACCAGAGAAGCTTTCTAGTTATGAATCGGGTATAGAACCCATGGGGGGAGGAGGCTTGGTTACAATTCCGAATACGCTATTACATGTTTGCGCTAGTTTTTGTTGTTTTTGATGTGGAAACGGTCTTTCTCTACCCTTGGGCAATGAGTTTCGACGTATTGGGTATATCCGTTTTTATCGAAGCTTTCATTTTCGTGCTTATCCTAGTTGTTGGTTTAGTTTATGCATGGCGAAAAAGGAGCCTTGGAATGGTCTTAACTGAATATTCAGACAAAAAAAAGAAGGAAAAGATTCCATTAAGACAGTTATGAGTTTGATTGAGTTTCCCCTACTTGACCAAACAAGTTCTAATTCCGTTATTTCAACTACACTAAAAGATCTTTCGAATTGGTCAAGACTCTCTAGTTTATGGCCCCTTCTATATGGTACCAGTTGTTGTTTCATTGAATTTGCTTCATTAATAGGCTCACGATTCGACTTTGATCGTTATGGATTGGTACCAAGATCAAGTCCTAGGCAAGCGGACCTAATTTTAATAGCCGATACAGTAACAATGAAAATGGTTCCCTCTTTAGTGAGATTATATGAGCAAATGCCTGAACCAAAATACGTCATTGCTATGGGAGCTTGCACTATTACTGGTGGAATGTTCAGTACGGATTCCTATAGTACTGTTCGGGGAGTTGATAAGTTAATTCCTGTGGACGTCTACTTGCCGGGTTGCCCACCTAAACCAGAGGCTGTTATAGATACCCTAACAAAACTTCATAAGAAGATATCGCGAGAAATAGTTGAGGATCGAACTCTATCTCAAAAGAAAAATCGATGTTTTACTACCAGCCACAAGCTTTATGTTCGGCGCAGTACTAATACTGGAACTTATGAGCAAGAATTGCTCTATCAATCATCATCTACTTTAGACATATCTTCTGAAACTTTTTTCAAATCCAAAAGTCCAGTATCTTCCTACAAATTAGTGAATTAG
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| CDS seq | ATGACGGCGCGGATTGGGGGAGGCGTGGAGGCGGGCGATCAGGCGGAGATCGGGGGCGGCAAGGGCGCGGAGGAGATCGGCGAGGAAGGCGTCGCTAGTGACGCCGGCGGGAGAGATCGTCGCGGACTGGTGGACGACCTGTTGATAAGGCTGGAGGCAGACCTAAGTCAAGGCTCACGATTCGACTTTGATCGTTATGGATTGGTACCAAGATCAAGTCCTAGGCAAGCGGACCTAATTTTAATAGCCGATACAGTAACAATGAAAATGGTTCCCTCTTTAGTGAGATTATATGAGCAAATGCCTGAACCAAAATACGTCATTGCTATGGGAGCTTGCACTATTACTGGTGGAATGTTCAGTACGGATTCCTATAGTACTGTTCGGGGAGTTGATAAGTTAATTCCTGTGGACGTCTACTTGCCGGGTTGCCCACCTAAACCAGAGGCTGTTATAGATACCCTAACAAAACTTCATAAGAAGATATCGCGAGAAATAGTTGAGGATCGAACTCTATCTCAAAAGAAAAATCGATGTTTTACTACCAGCCACAAGCTTTATGTTCGGCGCAGTACTAATACTGGAACTTATGAGCAAGAATTGCTCTATCAATCATCATCTACTTTAGACATATCTTCTGAAACTTTTTTCAAATCCAAAAGTCCAGTATCTTCCTACAAATTAGTGAATTAG
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| Protein seq | MTARIGGGVEAGDQAEIGGGKGAEEIGEEGVASDAGGRDRRGLVDDLLIRLEADLSQGSRFDFDRYGLVPRSSPRQADLILIADTVTMKMVPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDTLTKLHKKISREIVEDRTLSQKKNRCFTTSHKLYVRRSTNTGTYEQELLYQSSSTLDISSETFFKSKSPVSSYKLVN |
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| Function | NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [UniProtKB/Swiss-Prot:P0C343] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_06g0013680 | OsAzu_06g0013680.01 | Chr06 | 12505765 | 12509217 | + | NAM | ||
| CDS seq | ATGACGGCGCGGATTGGGGGAGGCGTGGAGGCGGGCGATCAGGCGGAGATCGGGGGCGGCAAGGGCGCGGAGGAGATCGGCGAGGAAGGCGTCGCTAGTGACGCCGGCGGGAGAGATCGTCGCGGACTGGTGGACGACCTGTTGATAAGGCTGGAGGCAGACCTAAGTCAAGGCTCACGATTCGACTTTGATCGTTATGGATTGGTACCAAGATCAAGTCCTAGGCAAGCGGACCTAATTTTAATAGCCGATACAGTAACAATGAAAATGGTTCCCTCTTTAGTGAGATTATATGAGCAAATGCCTGAACCAAAATACGTCATTGCTATGGGAGCTTGCACTATTACTGGTGGAATGTTCAGTACGGATTCCTATAGTACTGTTCGGGGAGTTGATAAGTTAATTCCTGTGGACGTCTACTTGCCGGGTTGCCCACCTAAACCAGAGGCTGTTATAGATACCCTAACAAAACTTCATAAGAAGATATCGCGAGAAATAGTTGAGGATCGAACTCTATCTCAAAAGAAAAATCGATGTTTTACTACCAGCCACAAGCTTTATGTTCGGCGCAGTACTAATACTGGAACTTATGAGCAAGAATTGCTCTATCAATCATCATCTACTTTAGACATATCTTCTGAAACTTTTTTCAAATCCAAAAGTCCAGTATCTTCCTACAAATTAGTGAATTAG
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| Protein seq | MTARIGGGVEAGDQAEIGGGKGAEEIGEEGVASDAGGRDRRGLVDDLLIRLEADLSQGSRFDFDRYGLVPRSSPRQADLILIADTVTMKMVPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDTLTKLHKKISREIVEDRTLSQKKNRCFTTSHKLYVRRSTNTGTYEQELLYQSSSTLDISSETFFKSKSPVSSYKLVN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.755578 | 0.000000 | 6.402435 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0423484 | SBH | 1.186243 | 0.0 | 2.620930 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g22010 | RBH | 0.000000 | 2.621269 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0423484 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006810 | SBH | 3.078001 | 0.428342 | 4.502482 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013490 | RBH | 6.215266 | 0.576774 | 5.044114 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0013620 | RBH | 0.224140 | 5.079984 | 7.012501 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013600 | RBH | 0.265914 | 0.147223 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0013720 | RBH | 1720.075439 | 40.556133 | 797.819580 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0206200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013210 | RBH | 29.654196 | 1.836470 | 11.212577 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0201700 | RBH | 0.376647 | 0.037695 | 0.072254 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0013730 | RBH | 23.575542 | 4.081563 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0013670 | RBH | 3.457268 | 50.889935 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0013380 | RBH | 177.761993 | 300.369934 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0013980 | RBH | 1.190753 | 0.005938 | 0.561781 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0013510 | RBH | 13.419702 | 56.295811 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G013380 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0013670 | RBH | 0.0 | 0.0 | 3.366788 |
