Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_05g0014120 | OGI:05046690 | 15/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr05:18374221-18381384 | ||||||||
| Gene Symbol | SRP33A, Os-SR33a, OsSR33a, SR33a, OsSRp33a, Os-SRp33a | ||||||||||
| DNA seq | GCTTCCGAAGCTTCTCGAGCCCTCCTCCTCCGCCGCCGCCGCCGCCGCCTCCGCCTCGCCGCCGGCGCAGAGTCGCAGGTTAGCTCCGTACTCCGCTCCCCTCCCCGAACCAAGCCGACGCCGCTGCTGGAATCCTAGTACTCCTGCGCGAGTTCTAGCGTGCTCTCTCTCTCTCCCGTCCCGTGCCGTTGCGTCCTCGCGCTTTAGTTCTCTCGGTTGAGCGAGTGCGCGAGTGTTCTGCTTGGTTCTCCGGTAGATTTGGTAGCCCGCGATCATATCTCCTAGGTTTTTTTTTTCCTTCGGTTGAGCGGGGCAGCAATTGAATTCGTGGTCGTCAGGGTTTCTGAGAGCTGGAGATGCAGTGCTATGCTTGGTTTGTTTTGCTGTTTGCGTGTTATCGTTACGTGGCTTGACGCTACGGCCATTGTTGGATTTGTGCGTGCTAATTTAGCTGACTTGATGTTTGTCTGTCAGGAACGATGAGCCGACGCAACAGCCGCACCATCTATGTGAGCAATCTCCCCGGAGACATTCGCGAGAGGGAAGTGGAGGATCTCTTCTATAAGGTGAGCCATGATTACATTACGGATTAGGCATGTGTGTGCCATGTAACAGTGTTATCCTCTAGTACTAAAGTGGTAGGTCAGTGCAAATTTTGTTTTGGTATCAGCGAGTACATCGTAGGCTGCTTTTAGGACTTAGGAGGAAGATATTTGGGGGCAATACTGCTTTCTTATGGAATTATAAATTTGCTATGTTGGGCCCTATGGTTTTCTGTTGTGTGGTTGGAGCATTTGTTAAATACTTCAATGTGAACTAGATATCTAAGTTGCGTCTTCACGCGACCATAACCTGTCTTTTATTTACAAATATGATAATGAATTGTTTGTAACAGTTACCTATGTTAAAATTTAATTCGTCTAGTTGCAGTTTTCAAATTCTACAATTGAATTTTGTTAAGGATTGAACTTTGGAGAGTATTTGGCCCAATTTCCGAGCAATTAGGTTGAGATATAGTTTTGCGTTATGCATATCAGTTTGTTTTTCTATTTGTTGGTTATGGATATATCTGTAGGTGATAGGTATTTTTTTTATCTTAATTATTCATTCTGGATCATTTCTATAACCGACACATCTGAATTTTAGACCTGCCAGTATTGTTTAGGACTTTTGTGAATATATGATTTATTATAGTTCTATTGACATAAAATCCATATAATACACATTATTCGTTATGTTTATTGGGTCTCTGTGGCTATGTAAAGATAGTAGTGATAATCATTTTTATGTGCAGTATTTTCACTTTATATGGATTTGATTTCGCTATATTTATTCATGTTTGTAATTGAATTTATGAACAAATTGAGATAGCAATCGAGGTGTAAGTGGTGGCCATGGATCGAAGTACTGACACGGGTGATGTTGGCTGAGGAAATATATTTCAACTTGACAGAAGATTTATCTTAATATGAGTTTCACATCTTGTTAGTAAAAGAGTTTATTTTGCTTTTCTTCTAAACTTGACCTAGGCGCACGGAGAAAAGAGGATGGAGTTTGGGCTTGCAGCTGTTGTAGTTAGGATGCATACCGATCCAATTAGGCCTATTTATGTCACCGAGTTATACATGCACCACAGCTAGAGGGTACTCTAGAATACTCCTACATTTTTAACAACTACTTAAGTTTCATCCAACGGTAAAGATTGTTTCGACTTATTTTGTCTTTAAGCGTATCTGACGGTTCATATTAGTCAGAAGAAGTGGCACATCCTGGTTTCTTTTTGAGATTTACTTTTCACTTGGAGAGATTCCACCAGTCGGTTGGGCACTTGGGCACCTCTTTGTTGTTGCCATCTTATGTGGTGAACTGGTGATACCGAAGGATGTTACTGGTAGAAGGGTAGAACAATGGCATCTTGTAATTACTAAATTTTCTGATATCTTTATTTTCTTGATTATTCATACAGATAGAGTTTAACTTTTTTTTTCATTACTTTTGCTTCTGCAGTATGGCCGTATTGTGGATATTGACTTGAAAATTCCTCCAAGGCCTCCTGGTTATGCTTTTGTTGAGGTAAGGGATTAAGTATGTTATGGTGATTACTTGCTATGAGCACATTTTCTATCTAGATTTTTGCTCATCTTTTTATATATAAGCTATCATTTTATTTAGTCATAACCTTGTTGTTATTTGAGGATTTTTTTTTGGGGTCTGTGAGCAAATTTAGCACATGAAAACCGACTACAGACATTAGCTTTATCAAAATCTAACCCGAATTGGTTGCTATTTTTTTTAACTTAAAAATGGTCCACACTAAACTGGATAGCCAAAGAAAACTGGACCTTTACTAATTCTTTTCGTATGGTCAAAAGTTGCCAAATTTTCATAAGATAAACTTCGGCTTGGCGTGAAATAAAACAACCCCTGGATAACAAACTTTAGAGGTTCTGTTAGAATGATGTGTTAATATGAACCCAGGAGTGTTTTGAGCTTTGAATAGGAGGTAGCGAGGTGGGTAAGCAGAGTGCTTGCATTCTACCCCTGAATGGACTTCTTCCCAATCATGGCAAGAGGACTCTAAGGCCGGCAAGTAGATGCAAGTTGATGATTAAATAAATTTCTTGGTTTGAAATGAAGCATTCTATGGAAGCTTATATTTCAGGCATCTCTTAGCAACCCATGCGATTAGTTTAGAGCTGAAACAAAGGAATATACTATCGCAACAATTTACCCCTAACGAACTCCTCAACTGGCTTGCCTGCTTGCTTATTACAATGTGTGACTACCTCTATATACCTTGCTCAGGGAAAGGAATAGGCAAATCTCTAAAATGGATAAGCTGGCAAGCACAGGTTTATAAACAGGAGTTAGGTATGGGTTGTGTGATTTGAACGATCAAGTAACGGATACAAGACATAGACCCCCTCCAGGTGCAAACATTATTGTTCTCATGCTTTGCCTTGCTACTACTTCTGTTCTTTTTATAGAACATTTTTTTTATCTATAATCAATATATCATTTTTATTATTTTTAGGAAAAGCAGAATGGGTAGATCTTGGCGCGCGCGCGTGCACACACACAAAAATAATAATAAAAAACTGGTTTAAGAATATCTCGCTTTTGTTATGTTGGACATGTGGTTCTCATTGGAAACTATGATGACTAACGAAAGTGCATAGGATGTGAGCAAGGGGCAACTTAAGGGTTACTATGGAGGCAAGAGAATGGAAACACCCAAATTTGTTTCTTTAAGCTCATGAGGAATTTGGGGGTGACGGAGACTGACAAAAAATGTAGGGGATGAGTGAAATTTGACATACGATCAATGAATTTTTCCATGTAGCATAAAGACAAAGGTTAGACAAACTTGCTTTAGAGGAAACTTAACAACTAGCCTCAAATCCAGTTTTGCCAAGTGTTGCTGAACTATCTAAAGAAATGCTTGTCAAAATTAACCTTGTGCAATCTGATTGTACATATAGCACCTTAGAGGCTAAGAGGACTTGATACTAACTAAAAGTGGTTCCTTATGCAGTTTGAAGACCCTCGTGATGCACAAGATGCAATTTATGGCCGTCATGGATATGACTTTGATGGCCACAGGTTGCGGGTAAGTGGATCTTGCATGATATCCGTTATCTTTCTTGAGAGAATACCAGGTGGTGAAGAGGGTAGTTCATATTTATTTATTTTTGTTGCAGCAGCAAAGAGGATAGTTTTGTTCTTTGTCGTAATGTTAATCTTATACCTTTATTTAGGTGGAGTTAGCTCATGGTGGCAGAGGCCCTTCTTTTGATCGATCAAGTAGCTATAGCAGTGCTGGGCGCCGTGGTGCCGCTAAACGTACTGATTACCGAGGTACGTACTTCTGAACTCAAGCTTTACAAACTTGATTGGATACATCAGTGTTCTTATTTGCTCTATTCATGGAATGTGCAGTTATGGTTACTGGATTACCTTCGTCAGCATCATGGCAAGACCTCAAGGTATTGATGCAGATGAACTCCCATACAATTATTCACTCTTCACGAATCTTGAGTTTTACTTCCATTTTCAGGATCATATGAGGCGAGCTGGTGATGTCTGTTTCTCTGATGTTTACCGTGAGGGTGGAGGTTAGTACTGAACACTTCTATGCTCTTCTGTTGCTGATATTAATTTTGGTATGAATTGGGCAGTAGTTTGTTTTGATAATACAGCAACCATTTAAGCTGTATTATCTTTTTCCATTCATGTTTCAGTAGTTCTTACTTCTTAATACTGAAATTTCATGTGTTTCAGCAACTATTGGAATTGTTGATTATACCAACTATGAGGATATGAAACAAGCGGTAAGTTTGAATTAGTTCTATGCATTTTACTTTCCAGAAGTGAACACTGCCATGTGCCATCTGGAAATTCATGTTTTGGTTGGTTCCTTTAATAATAGAAAAAGGGCACTTTGTGATATGCCAGACACCTACTTTCTCCCCAATCATGCATGTTCTTATCTTCCCGTGAAGATACACCTGACAAGCAGTTTTTTGTTACCTTACAGATAAGAAAGCTTGATGACTCAGAGTTCCGTAATGCATTTTCACGGGCATATATCAGGGTATGGTCATACTGGAAATGTTTCTGCACTTCATTTAACCTAATCTCAAGTTGAAGATTTACGTACTCATGGACATGTCTGTTAAAGGTGAGGGAGTATGATTCTGCTAAGCGCAGCCGCTCTCGTTCCAGAGGTAGAAGCCACAGCCGCTCTATCTCCAGAAGCAGAAGCCGCAGCCGCTCGATCTCCAGAAGCAGAAGCCGCAGTTATAGCAGAAGCAGGAGTCCAAGGTATGGTTTGAATCTCATAATGCTCAAATGAATTTGTTATGGTAACAACAACATGAATATTATTACAATGTGCTGTTTTTTCCTTCCAGATCTAGGTCTGCTTCTCGGTCTCACTCACCTGTGAAAGAAAGGTATGCACAGTTCCATTTTGATTTTGAATTTTTCAAAGTTAAGAAACTGAGTAGCTTTGGCATGTGTTATCTTCATATTGGCTATTGAAAAACTGCACATGATTTTTTAAGAAATGGACCCCCTCCAATGTTGATTATTGAAATTTGATTATGTAATTAGCCTATGTTATCCCATATCTCCCTCAAATAATTGCAAGAAAGGAAATGTCGTTAACTTAAATGAGTTTACTGCTGTTCTCTGCTTCCAGATCTAGGTCGGCTTCACAGTCTCGCTCACCTGTGAAGGAAAGGTATGCGTAGTTCCATTTCGATTTTGAATTCATAACATATTACATAGTACATGGAATGCTTTCGATTCATTGCGATGGTGTGATACTGAGATTCTCGGATTAATACTATGTTACAAAGTTAAGAAACTAAGTAGCATTTGCATGCGTTATCTTCAATTTGCCAAAAAAGAAACTACATATGATTTTCTAAGAACCCCTCCAATGTTGTACATTCAAATTTGATTATGTGATTAGCCTGTGTGATCCCATATCTATCTCTAATAATTGCAATACACGAAATATTGTAAAATGAAATAGGGCCGGCTCTTTATATTCTCATATAATTTGTCATTTCCTTTCTGGTTTGTACTTTAAATGTTATGCTTTCGAGATGCATTTTTTCTTCTGTACATGCACTTTGAGTTTCCACTCTCTGATGATTAAACATGCAGAAAACTGGATAGCTGTCATTTGTTGAAAATTTGCTCTTGTCTTTCCTAGATTTGGGACATGCAGCTATTTGGGTTGCGTTGGTAGGATATTGGATGCGTTGAGAACCAAAGGATGGTTTGGAACGTTGGATAGTTCTGCTGGCTAGTGACATACTGTATGACAAGTGGACTACAACCAGCGATAGGAGCAAGATAGGGCTGGCTCTAAACATATTTGGACTTATGGAGTGCATTTCGTGGTATAATTGAAGTACTATTGACTTACGCATTTCTATTCTCAAATGTAAACCTCGGCCTTGCACCCCTATTGGTTATTCTCAAACATAACCTCACCTTAATGTTGAAGTTTATTTCTAAATTACACTTTCTGATGAAATAAGTGTGTTTAGCGATTAGCTCTTTAACCAATTTGTGATCTATTGTGGCTTCACCTTCATTTGGAGGACTCGTGATTTTACTTATAAGGTCTGTCATAGTTTTTCAAAAGATGACATGTTACATGTACAGTGGAAAAAGGTGGTCCCTTTACCTATGCTCATCCAAAACACTTCTCCACATGTTTACTGTTTATTGCTCTCAATCTCATGTGTATTGATGTTACCATATTCACACATATTTTGATCAAACTGTTGTAATATCCCTTTACTGAGTAACAATTTCTTGGCTTTTGGAACATTTTGCAGATCACCATCAAGATCCCCACCCCCTGCTACTTCTGTAAGTTTTCCAAACAAGTAACTTATATTCTATAAATTTGTTCCATATAGTAACCATTGTCTCGTGCAGCCTCCTCGTGAAAAGTCAGCAAGCAAGAGCCCTGTCAAGAGCAGAAGTTTATCCCGATCCCCATCTCCTGTCCGTGACATTAACCAAAAACTCTGTATTTTTGTGAGCCTTTAATATGCTTGAAGTTTCCCATATTGATATGGTCAATGCTTCCTTTCAGGTGAAATCTGAGTGAAGATGGATGCACTTGAAGCCTGCCAGAAACTATTTCATGATTTGTGGAGCTGAGTTTCGGAAGGCAGTAGATTGTGGATTATGGTTTATCTGTTTCTGCGTTACCATTGTTGTTACTTTTCAGAAGAGAGCCGTGTTATTTCACTGTTGCTTGGTCATGTCGTAATATCTGTCAGAAACATTGCCTTACATGCTTAGCGTTTTACTTGCCATCACCAATCTATCAGACCTCGTAGCACATGGTGCTCGAACTTCATGCTATACATACAGCACTATGAACTCTGCTATATTCTAAAGCTCAACTATCTGTAGTAACTGCAGGAAGCCTTTGCGCTTCAATTATTGTCTTTTTACTCTAGTTTTTTAGAGCTTGTGCTTGTGTACTTGTATGCACCTGTTATGTTGTAATTCTACAGAGTGGTTTTCCTCGCTTAATTGTTGACATGTTTTGTCGTTCGGTGTAATTGTGCGACCACTGATGCGTGATATGGTCTTGCTGACATGGCTTGGCTTGGATTGGCTTGACCT
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| CDS seq | ATGAGCCGACGCAACAGCCGCACCATCTATGTGAGCAATCTCCCCGGAGACATTCGCGAGAGGGAAGTGGAGGATCTCTTCTATAAGTATGGCCGTATTGTGGATATTGACTTGAAAATTCCTCCAAGGCCTCCTGGTTATGCTTTTGTTGAGTTTGAAGACCCTCGTGATGCACAAGATGCAATTTATGGCCGTCATGGATATGACTTTGATGGCCACAGGTTGCGGGTGGAGTTAGCTCATGGTGGCAGAGGCCCTTCTTTTGATCGATCAAGTAGCTATAGCAGTGCTGGGCGCCGTGGTGCCGCTAAACGTACTGATTACCGAGTTATGGTTACTGGATTACCTTCGTCAGCATCATGGCAAGACCTCAAGGATCATATGAGGCGAGCTGGTGATGTCTGTTTCTCTGATGTTTACCGTGAGGGTGGAGCAACTATTGGAATTGTTGATTATACCAACTATGAGGATATGAAACAAGCGATAAGAAAGCTTGATGACTCAGAGTTCCGTAATGCATTTTCACGGGCATATATCAGGGTGAGGGAGTATGATTCTGCTAAGCGCAGCCGCTCTCGTTCCAGAGGTAGAAGCCACAGCCGCTCTATCTCCAGAAGCAGAAGCCGCAGCCGCTCGATCTCCAGAAGCAGAAGCCGCAGTTATAGCAGAAGCAGGAGTCCAAGATCTAGGTCTGCTTCTCGGTCTCACTCACCTGTGAAAGAAAGATCTAGGTCGGCTTCACAGTCTCGCTCACCTGTGAAGGAAAGATCACCATCAAGATCCCCACCCCCTGCTACTTCTCCTCCTCGTGAAAAGTCAGCAAGCAAGAGCCCTGTCAAGAGCAGAAGTTTATCCCGATCCCCATCTCCTGTGAAATCTGAGTGA
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| Protein seq | MSRRNSRTIYVSNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYGRHGYDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRTDYRVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSEFRNAFSRAYIRVREYDSAKRSRSRSRGRSHSRSISRSRSRSRSISRSRSRSYSRSRSPRSRSASRSHSPVKERSRSASQSRSPVKERSPSRSPPPATSPPREKSASKSPVKSRSLSRSPSPVKSE |
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| Function | Serine/arginine-rich-splicing factor SR34 [UniProtKB/Swiss-Prot:O22315] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_05g0014120 | OsAzu_05g0014120.01 | Chr05 | 18374221 | 18381384 | + | NAM | ||
| CDS seq | ATGAGCCGACGCAACAGCCGCACCATCTATGTGAGCAATCTCCCCGGAGACATTCGCGAGAGGGAAGTGGAGGATCTCTTCTATAAGTATGGCCGTATTGTGGATATTGACTTGAAAATTCCTCCAAGGCCTCCTGGTTATGCTTTTGTTGAGTTTGAAGACCCTCGTGATGCACAAGATGCAATTTATGGCCGTCATGGATATGACTTTGATGGCCACAGGTTGCGGGTGGAGTTAGCTCATGGTGGCAGAGGCCCTTCTTTTGATCGATCAAGTAGCTATAGCAGTGCTGGGCGCCGTGGTGCCGCTAAACGTACTGATTACCGAGTTATGGTTACTGGATTACCTTCGTCAGCATCATGGCAAGACCTCAAGGATCATATGAGGCGAGCTGGTGATGTCTGTTTCTCTGATGTTTACCGTGAGGGTGGAGCAACTATTGGAATTGTTGATTATACCAACTATGAGGATATGAAACAAGCGATAAGAAAGCTTGATGACTCAGAGTTCCGTAATGCATTTTCACGGGCATATATCAGGGTGAGGGAGTATGATTCTGCTAAGCGCAGCCGCTCTCGTTCCAGAGGTAGAAGCCACAGCCGCTCTATCTCCAGAAGCAGAAGCCGCAGCCGCTCGATCTCCAGAAGCAGAAGCCGCAGTTATAGCAGAAGCAGGAGTCCAAGATCTAGGTCTGCTTCTCGGTCTCACTCACCTGTGAAAGAAAGATCTAGGTCGGCTTCACAGTCTCGCTCACCTGTGAAGGAAAGATCACCATCAAGATCCCCACCCCCTGCTACTTCTCCTCCTCGTGAAAAGTCAGCAAGCAAGAGCCCTGTCAAGAGCAGAAGTTTATCCCGATCCCCATCTCCTGTGAAATCTGAGTGA
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| Protein seq | MSRRNSRTIYVSNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYGRHGYDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRTDYRVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSEFRNAFSRAYIRVREYDSAKRSRSRSRGRSHSRSISRSRSRSRSISRSRSRSYSRSRSPRSRSASRSHSPVKERSRSASQSRSPVKERSPSRSPPPATSPPREKSASKSPVKSRSLSRSPSPVKSE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.380380 | 0.000000 | 2.927392 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0364600 | RBH | 1.235385 | 1.151808 | 4.887150 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g30140 | RBH | 0.641157 | 0.680983 | 0.968454 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0364600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0014560 | RBH | 1.136344 | 0.000000 | 13.096912 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0014130 | RBH | 0.211769 | 0.726626 | 1.652096 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0013970 | RBH | 1.070106 | 3.282971 | 3.903173 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0014000 | RBH | 0.000000 | 0.140293 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0014130 | RBH | 5.070879 | 16.097797 | 8.299903 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0013690 | RBH | 0.161259 | 0.322648 | 0.611055 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0274600 | RBH | 8.4921755 | 22.2812005 | 9.208866 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0013880 | RBH | 0.125259 | 0.112448 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0013900 | RBH | 0.280630 | 6.868941 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0013930 | RBH | 5.112646 | 16.751844 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0013980 | RBH | 0.000000 | 0.590755 | 0.540892 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0013980 | RBH | 0.224370 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G013680 | RBH | 0.000000 | 0.0 | 0.139329 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0013920 | RBH | 0.128624 | 2.932235 | 1.035362 |
