Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_05g0007130 | OGI:01009580 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr05:7040911-7043553 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACAGATTCTCTAACTAATATCCCAATATCTCTGGTTCCTCAGTCCGCATATATCGTTCCTCACAAACAGGGAAGCGATTTTGTTCCTAATATTTCCTCGTCGGTCTCTCTCGCGCGCAAAGCAGTCTCTCGCGCGCGCAAAGGGAAAATGTTCCCGCGCACTTCTCCGCGCCCTCGCTCCTCAGCGGCGAAGCCTTCTCCGCGCCCTCGCTCCTCGGCGGCTACACCTTCTTCCTCGGTGGGGGCACCCTCTTCCTCGGCGGCGGCGTCCTCTTCATCGGCGGCAGCTCCCTTTTCCCTTTTGCAAGGCACGGGGCGTGGTGTCCTGATGACGGCCGGAGGTATGCCGTTTCCGCGGTACGGCGAGTTCTGGCCCGGCGGCCATCCGTGCCCTCCACCACCGCCTGGCGGCCATCCGCGCCCCACACCGCCGCCCGGCGGCCATGCGCGGCCCCCACCGCCGCCCGGCGGCCATGCGCGCCCCCCACCGCCGCCCGCCGGCCATGCGCGCCCTCCACAACGCTACTCCGGTTTTCAGGCATCCGAGGCCATGGAGAAGCTGACATCTAGCGAGCCATTGGATCCCCTCTCACACGAAGCTTCTATCGGCAGTTCCTCCAGAGTATGGACTGTAGGTGACGAAGAATTCCTCCACATGAACAATTTCGGTAAGTCCAATCCTGATTTGTTCAGTGTTTAGTTTACATGCTCTGAATTCCTTCACATCTGAAGCTTTCTTGATTGTGCTTTCTTTTTTTTCTTCAATCTGGATAGTATTGTCTAATTTATACTATCTGATAGAGGTTGCATTTTCAGAAATTTTCATCATGTTCTTTTGTGTATGCTTGCAATTGTAGCAAAATTGCCTGACTTGAACAAGGGTATGTCTGCTGTATGTGCTGATGTACTTCACTGTGGTGTATATCCTGCATTTATGTCCAGAAGTATATAGGGTATGTACAGCATGCAGGAAAGAATAGTCAGTGGTGTTGTGCTGGAATTTCAGTTTGACACTATGTAGTGAGTATAATATGCTATCAAATTTATGCTCTGAGTTTGACACAATGGAAATTCAGTATGTACTGAGTTTCATATACGATGCTCTGAAATTTGACCTGTTGAGCAGTTATCTGAACCTTGTCGCTGTCAGGATCGATATAGGAACATTTCTATGAACCTTGTCATTTTCAGTATCCAAATTAGCAACATTTGTGTGCTCTCTCCATGCGAATGCACAGCTTTTGATTAATATTATGTGTACACAAAGTTGTCACCATCCATTACATGTGAACTTTCAGATAACAGAATGCATTTTTTGTCCAGAAATTATCACTTGTTTGTCTTTTGTTAGTCTTTTTTTTTCTCAAGTACAAGGTTATGATTTTTTATCTATGGACAGATGATATGGAGCGAGAGCGATATTACACAAACTTGATCAATGATGAGAGCAACCATTTTGGCTCGAGTGAGATGGGAAGCCAGTATGATGATGAACAAGAACCAGTTGTGAATGAAAATGTTGCTGTGAGACCGAACCAAAAAAGATCAAAAAATTTCAGTTTGGAGGAGGACAATCTTTTGGTGTCGGCGTGGATAAATGTTTCTTTCGATCCGGTTCAAGGGACGGATCAATCTCACGGTACATATTGGGGACGTATTCATGACTACTTTCATCAGAACAAGGAATTCGAATCAGATCGCTCCCAAAGTTCACTTGTACATCGTTGATCCACTATACAAGAACATGTCAATAAGTATTGTGGTTTCTTAAGTCAGATTCAGAATCGAAATCAGAGTGGTGTCAATCATGAGGACATGGTAATATATTGCTTGTGTTGCTTATTTTCCAATCGTCTCCTTTATGTTTCTGACTTCAGTTCATTTATTTGCAGCATGTGCAAGCAAGCCTGATGTACAAGAAGAAAGAGGAAAAGAAGTTTCAGTTCATGCATTGCTACAACATTTTAAAGAATCTGCCAAAGTGGGATGATAAGCGGAATCAGCTGGCAGCTAGTAAAACTTCAAGCAAGAAGCAGAAGAAGACCGCCAATGATTCTCCTGCGATATCTACTCCTGCATGTAATGTTGATGAGAATAGGGCTGCTGATCCTGAGAATACAGTAGGTGAGGGAAGACCCATGGGGAGGAAGAAGGCGAAACAACAGATGCGCGAACGCTCGGATCTATCACGGAAAGAGTCCTTAGACTATCTATGGGATAAGAAGAAAGAGGCCGATGCGGAGAAGGAGCGAAAGTTTGAGGAGAGGTACCAAATTGCTTTTGCACTTGAGCAAAAGCGGATTGATTTGGAGAGAGACAAGTTCGAGTTCAAGAGAATGACAAAAGAAGATAAGCTTTTGAGGACTGATACTAGTGCAATGAGCATCGAGGAGCAGGAGTACTATAAAAATGTGAAGAATCAAATTCTAAGTCGTCGTTCAGCTCAAGCATAAATTAGTCTTATTACTCATCAATTAGCATTCAAAATTTGTTAGATCTTTAGCTATAGAGTCTACTTAATGGACTAGTAAATTTTACTATCTTGTTTTGGTACTGTTTTATGTAGCCGGAGCATTTGCTACTACTACAAAATTGCTGGAAATTGTTTTTTTGTTCAAAATTGCTGGAAATTGTTGCTGATGG
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| CDS seq | ATGTTCCCGCGCACTTCTCCGCGCCCTCGCTCCTCAGCGGCGAAGCCTTCTCCGCGCCCTCGCTCCTCGGCGGCTACACCTTCTTCCTCGGTGGGGGCACCCTCTTCCTCGGCGGCGGCGTCCTCTTCATCGGCGGCAGCTCCCTTTTCCCTTTTGCAAGGCACGGGGCGTGGTGTCCTGATGACGGCCGGAGGTATGCCGTTTCCGCGGTACGGCGAGTTCTGGCCCGGCGGCCATCCGTGCCCTCCACCACCGCCTGGCGGCCATCCGCGCCCCACACCGCCGCCCGGCGGCCATGCGCGGCCCCCACCGCCGCCCGGCGGCCATGCGCGCCCCCCACCGCCGCCCGCCGGCCATGCGCGCCCTCCACAACGCTACTCCGGTTTTCAGGCATCCGAGGCCATGGAGAAGCTGACATCTAGCGAGCCATTGGATCCCCTCTCACACGAAGCTTCTATCGGCAGTTCCTCCAGAGTATGGACTGTAGGTGACGAAGAATTCCTCCACATGAACAATTTCGATGATATGGAGCGAGAGCGATATTACACAAACTTGATCAATGATGAGAGCAACCATTTTGGCTCGACAAGCCTGATGTACAAGAAGAAAGAGGAAAAGAAGTTTCAGTTCATGCATTGCTACAACATTTTAAAGAATCTGCCAAAGTGGGATGATAAGCGGAATCAGCTGGCAGCTAGTAAAACTTCAAGCAAGAAGCAGAAGAAGACCGCCAATGATTCTCCTGCGATATCTACTCCTGCATGTAATGTTGATGAGAATAGGGCTGCTGATCCTGAGAATACAGTAGGTGAGGGAAGACCCATGGGGAGGAAGAAGGCGAAACAACAGATGCGCGAACGCTCGGATCTATCACGGAAAGAGTCCTTAGACTATCTATGGGATAAGAAGAAAGAGGCCGATGCGGAGAAGGAGCGAAAGTTTGAGGAGAGGTACCAAATTGCTTTTGCACTTGAGCAAAAGCGGATTGATTTGGAGAGAGACAAGTTCGAGTTCAAGAGAATGACAAAAGAAGATAAGCTTTTGAGGACTGATACTAGTGCAATGAGCATCGAGGAGCAGGAGTACTATAAAAATGTGAAGAATCAAATTCTAAGTCGTCGTTCAGCTCAAGCATAA
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| Protein seq | MFPRTSPRPRSSAAKPSPRPRSSAATPSSSVGAPSSSAAASSSSAAAPFSLLQGTGRGVLMTAGGMPFPRYGEFWPGGHPCPPPPPGGHPRPTPPPGGHARPPPPPGGHARPPPPPAGHARPPQRYSGFQASEAMEKLTSSEPLDPLSHEASIGSSSRVWTVGDEEFLHMNNFDDMERERYYTNLINDESNHFGSTSLMYKKKEEKKFQFMHCYNILKNLPKWDDKRNQLAASKTSSKKQKKTANDSPAISTPACNVDENRAADPENTVGEGRPMGRKKAKQQMRERSDLSRKESLDYLWDKKKEADAEKERKFEERYQIAFALEQKRIDLERDKFEFKRMTKEDKLLRTDTSAMSIEEQEYYKNVKNQILSRRSAQA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_05g0007130 | OsAzu_05g0007130.01 | Chr05 | 7040911 | 7043553 | + | NAM | ||
| CDS seq | ATGTTCCCGCGCACTTCTCCGCGCCCTCGCTCCTCAGCGGCGAAGCCTTCTCCGCGCCCTCGCTCCTCGGCGGCTACACCTTCTTCCTCGGTGGGGGCACCCTCTTCCTCGGCGGCGGCGTCCTCTTCATCGGCGGCAGCTCCCTTTTCCCTTTTGCAAGGCACGGGGCGTGGTGTCCTGATGACGGCCGGAGGTATGCCGTTTCCGCGGTACGGCGAGTTCTGGCCCGGCGGCCATCCGTGCCCTCCACCACCGCCTGGCGGCCATCCGCGCCCCACACCGCCGCCCGGCGGCCATGCGCGGCCCCCACCGCCGCCCGGCGGCCATGCGCGCCCCCCACCGCCGCCCGCCGGCCATGCGCGCCCTCCACAACGCTACTCCGGTTTTCAGGCATCCGAGGCCATGGAGAAGCTGACATCTAGCGAGCCATTGGATCCCCTCTCACACGAAGCTTCTATCGGCAGTTCCTCCAGAGTATGGACTGTAGGTGACGAAGAATTCCTCCACATGAACAATTTCGATGATATGGAGCGAGAGCGATATTACACAAACTTGATCAATGATGAGAGCAACCATTTTGGCTCGACAAGCCTGATGTACAAGAAGAAAGAGGAAAAGAAGTTTCAGTTCATGCATTGCTACAACATTTTAAAGAATCTGCCAAAGTGGGATGATAAGCGGAATCAGCTGGCAGCTAGTAAAACTTCAAGCAAGAAGCAGAAGAAGACCGCCAATGATTCTCCTGCGATATCTACTCCTGCATGTAATGTTGATGAGAATAGGGCTGCTGATCCTGAGAATACAGTAGGTGAGGGAAGACCCATGGGGAGGAAGAAGGCGAAACAACAGATGCGCGAACGCTCGGATCTATCACGGAAAGAGTCCTTAGACTATCTATGGGATAAGAAGAAAGAGGCCGATGCGGAGAAGGAGCGAAAGTTTGAGGAGAGGTACCAAATTGCTTTTGCACTTGAGCAAAAGCGGATTGATTTGGAGAGAGACAAGTTCGAGTTCAAGAGAATGACAAAAGAAGATAAGCTTTTGAGGACTGATACTAGTGCAATGAGCATCGAGGAGCAGGAGTACTATAAAAATGTGAAGAATCAAATTCTAAGTCGTCGTTCAGCTCAAGCATAA
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| Protein seq | MFPRTSPRPRSSAAKPSPRPRSSAATPSSSVGAPSSSAAASSSSAAAPFSLLQGTGRGVLMTAGGMPFPRYGEFWPGGHPCPPPPPGGHPRPTPPPGGHARPPPPPGGHARPPPPPAGHARPPQRYSGFQASEAMEKLTSSEPLDPLSHEASIGSSSRVWTVGDEEFLHMNNFDDMERERYYTNLINDESNHFGSTSLMYKKKEEKKFQFMHCYNILKNLPKWDDKRNQLAASKTSSKKQKKTANDSPAISTPACNVDENRAADPENTVGEGRPMGRKKAKQQMRERSDLSRKESLDYLWDKKKEADAEKERKFEERYQIAFALEQKRIDLERDKFEFKRMTKEDKLLRTDTSAMSIEEQEYYKNVKNQILSRRSAQA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0227800 | RBH | 0.252906 | 0.421903 | 3.342934 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g13960 | RBH | 0.170920 | 0.283585 | 0.860315 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0227800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016380 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0007170 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004850 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0004690 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003760 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003720 | SBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0116900 | RBH | 3.879043 | 5.8803155 | 8.2550055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0025900 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026450 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016150 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016130 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016390 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G019210 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034340 | RBH | 0.0 | 0.0 | 0.0 |
