Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_04g0025350 | OGI:04089800 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr04:28932457-28934701 | ||||||||
| Gene Symbol | DLN66, OsDLN66, RLI1, OsRLI1, RLI1/HINGE1, HINGE1, OsHINGE1 | ||||||||||
| DNA seq | AGACTTGCACTGCTCTTTTATCTCTTTCTCTGGCCACCAAGCTGGTTGTTGTATATTACTAGTAGTAATCCGTCGCCGATAGCTGCTTCGTGTTGCTCGATCTTTGACCAGCCAGTGGGGTTGGAGGAGGGAGGGAGCTAGCTATAGTTGCTAGCGTGTTTACGTTTTTGCCGGCGAGGCGATCGACGGAGATGTTTGAGGGGTGCTACGGCGGAGTCGGGTCGGCGGCGGCGGCGGCGGCGCGGGACCCGAAGCCGCGGCTGCGGTGGACGCCGGACCTCCACGAGCGCTTCGTCGACGCCGTCACCAGGCTCGGCGGCCCGGACAGTGAGTCCTCTTTGCCCATCAGTCAGTTCGTTTCCTGCTTAATTTTCTCTTCGCGGCACGGTGACGACAACTTCGTAGTCCTCTAGCTCTGTTTCGGTTGGCACTTGGCAAAGGCAAATAGTCTGCTGATTTCTCTAAACTGCAATGTTTATTGCATTGTTCATCCAAATCCTTTTCCTCTGCGTGACTCTGCAGCTTGGCACATAACTATGTAGAGCTGCATGGTTAATTTTGGGCATGCAAACTGGTTTTCAATTTCAGTGTCAAGAATTTCATTCGAAGAATAGTACGCAAACATCATTTGTCATGCTAAATAAAAATATCACGCATAATCCAGTTTGAACCTGCTTCCTTTATCCTTTATCATAGAATAATTGATTGTCTCCATTCTGATCGTGCTTCCTGCAACAGAAGCAACACCCAAGTCGGTGCTCAGATTAATGGGCATGAAAGGCCTCACCCTGTACCATCTAAAAAGCCACCTCCAGGTTTGAACTCATTTTCATAGATAAAACATTCCATATAGCTGCTCTTTTATTTTCTGTTTTTTTTCGCTCAGTTATATTAACACAGTGCTACTTGTATTGTAACTAGAAATATAGACTGGGAAGGCAAAGCAAGAAATCAGCAGGCCTGGAGCTAGCAGTAGCAGATAGTGGTGGTATGTGCCTACCTTGAAATATTACTGTCATGACTCATGAGCAGAATCAAAAGTATCATGCCTTAAAGCTAAGATTTGTCCACACTTCCTACCTTTATTTTATCAGAATTTACAGCGGAAGGCATCAGTTTTTCTATCGGAGCGCCTCCAAGGAATCCTGCCGGAGGAAACAACACGGGGTAACTAGCAATTGCCCTTCTGCTTGTCCTCATAATGCACTACAATAGAATCATCATAGTCTATTACAGCTACAATGGTATATTTGTAATGGGATGTAAATCCTACTGAATGCCTTTTGTTATGTGATCTTTGGGGATTTTTAATTTCCTTCAGTGGAAGTTCTATGAGTGTCTGACTAACCATCTTTAGAACATTTCTCTTGTGAAGCAGAGAAATACCGCTTGCAGATGCGCTAAAGTATCAAGTCGAAGTCCAAAGAAAACTGCAAGAACAACTTGAGGTTAGACCATCGACAGCTTTTGCATCAATCCATGAGCTTCTACTTGCCAATGTTTTCTTCCATTATTGCTAAAAGTGCTTGTCTACACTCAGGTTCAAAAGAAGCTGCAGATGCGAATAGAAGCCCAAGGGAGGTATTTAAAGGAAATACTAGAGAAAGCTCAGAAAAACATTTCCCTGGATGCAAATGGGTCTGCTAACCTCTCATCAACCAGATCACAGATTACAGACATCAACCTAGCTCTTTCAGGTTTCATGGACAATGCAACACAAGTTCAGGAGGAAAACAATGAACTGATGAAACCTATATCTGATGACAACCTAAAAGTTAATAATTTGGGCTTTCAGCTCTACCATTTAGGAAGTCAGGAGAGTAAGGATGTTAAGTGCACTCCAAAAACTGAAGAGTTGCTTCTACTAGACTTGAATATTCAAGGAGGATATGAACTCTCTTCTAGAGGAATGCAAGGGTGTGAGTTGGATCTGAAGATCAACCAGCAGAGAAGATAGAGAGTTGTTTCACAAACCTAACAGTTTTGGAAAGTTGACCGTTCGCTATTAGTTTATTCTTTTTCCATGTGCCAGTGTTGAGCATGCTTGTGTTCACAAGTTTGTTTTTTCTGTCTGCTAATGTTAAATTTCCTGAAAGGAACTTCTGAATAAATATGGTATTATTTAGTTATTTGAAGCTTCAATTGTATATACGAGTGAAGTGTGCAAAATGAGGGAACATCCAACACAGATGTGTATATTCTATCCAAGTATCCTATAAATTGATGTTTTACTTTTGTTCTTATT
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| CDS seq | ATGTTTGAGGGGTGCTACGGCGGAGTCGGGTCGGCGGCGGCGGCGGCGGCGCGGGACCCGAAGCCGCGGCTGCGGTGGACGCCGGACCTCCACGAGCGCTTCGTCGACGCCGTCACCAGGCTCGGCGGCCCGGACAAAGCAACACCCAAGTCGGTGCTCAGATTAATGGGCATGAAAGGCCTCACCCTGTACCATCTAAAAAGCCACCTCCAGAAATATAGACTGGGAAGGCAAAGCAAGAAATCAGCAGGCCTGGAGCTAGCAGTAGCAGATAGTGGTGAATTTACAGCGGAAGGCATCAGTTTTTCTATCGGAGCGCCTCCAAGGAATCCTGCCGGAGGAAACAACACGGGAGAAATACCGCTTGCAGATGCGCTAAAGTATCAAGTCGAAGTCCAAAGAAAACTGCAAGAACAACTTGAGGTTCAAAAGAAGCTGCAGATGCGAATAGAAGCCCAAGGGAGGTATTTAAAGGAAATACTAGAGAAAGCTCAGAAAAACATTTCCCTGGATGCAAATGGGTCTGCTAACCTCTCATCAACCAGATCACAGATTACAGACATCAACCTAGCTCTTTCAGGTTTCATGGACAATGCAACACAAGTTCAGGAGGAAAACAATGAACTGATGAAACCTATATCTGATGACAACCTAAAAGTTAATAATTTGGGCTTTCAGCTCTACCATTTAGGAAGTCAGGAGAGTAAGGATGTTAAGTGCACTCCAAAAACTGAAGAGTTGCTTCTACTAGACTTGAATATTCAAGGAGGATATGAACTCTCTTCTAGAGGAATGCAAGGGTGTGAGTTGGATCTGAAGATCAACCAGCAGAGAAGATAG
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| Protein seq | MFEGCYGGVGSAAAAAARDPKPRLRWTPDLHERFVDAVTRLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRLGRQSKKSAGLELAVADSGEFTAEGISFSIGAPPRNPAGGNNTGEIPLADALKYQVEVQRKLQEQLEVQKKLQMRIEAQGRYLKEILEKAQKNISLDANGSANLSSTRSQITDINLALSGFMDNATQVQEENNELMKPISDDNLKVNNLGFQLYHLGSQESKDVKCTPKTEELLLLDLNIQGGYELSSRGMQGCELDLKINQQRR |
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| Function | Myb family transcription factor PHL11 [UniProtKB/Swiss-Prot:C0SVS4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_04g0025350 | OsAzu_04g0025350.01 | Chr04 | 28932457 | 28934701 | + | NAM | ||
| CDS seq | ATGTTTGAGGGGTGCTACGGCGGAGTCGGGTCGGCGGCGGCGGCGGCGGCGCGGGACCCGAAGCCGCGGCTGCGGTGGACGCCGGACCTCCACGAGCGCTTCGTCGACGCCGTCACCAGGCTCGGCGGCCCGGACAAAGCAACACCCAAGTCGGTGCTCAGATTAATGGGCATGAAAGGCCTCACCCTGTACCATCTAAAAAGCCACCTCCAGAAATATAGACTGGGAAGGCAAAGCAAGAAATCAGCAGGCCTGGAGCTAGCAGTAGCAGATAGTGGTGAATTTACAGCGGAAGGCATCAGTTTTTCTATCGGAGCGCCTCCAAGGAATCCTGCCGGAGGAAACAACACGGGAGAAATACCGCTTGCAGATGCGCTAAAGTATCAAGTCGAAGTCCAAAGAAAACTGCAAGAACAACTTGAGGTTCAAAAGAAGCTGCAGATGCGAATAGAAGCCCAAGGGAGGTATTTAAAGGAAATACTAGAGAAAGCTCAGAAAAACATTTCCCTGGATGCAAATGGGTCTGCTAACCTCTCATCAACCAGATCACAGATTACAGACATCAACCTAGCTCTTTCAGGTTTCATGGACAATGCAACACAAGTTCAGGAGGAAAACAATGAACTGATGAAACCTATATCTGATGACAACCTAAAAGTTAATAATTTGGGCTTTCAGCTCTACCATTTAGGAAGTCAGGAGAGTAAGGATGTTAAGTGCACTCCAAAAACTGAAGAGTTGCTTCTACTAGACTTGAATATTCAAGGAGGATATGAACTCTCTTCTAGAGGAATGCAAGGGTGTGAGTTGGATCTGAAGATCAACCAGCAGAGAAGATAG
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| Protein seq | MFEGCYGGVGSAAAAAARDPKPRLRWTPDLHERFVDAVTRLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRLGRQSKKSAGLELAVADSGEFTAEGISFSIGAPPRNPAGGNNTGEIPLADALKYQVEVQRKLQEQLEVQKKLQMRIEAQGRYLKEILEKAQKNISLDANGSANLSSTRSQITDINLALSGFMDNATQVQEENNELMKPISDDNLKVNNLGFQLYHLGSQESKDVKCTPKTEELLLLDLNIQGGYELSSRGMQGCELDLKINQQRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 3.691105 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0600000 | RBH | 0.000000 | 0.151193 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g51130 | RBH | 0.000000 | 0.101080 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0600000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0030210 | RBH | 0.000000 | 3.452804 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0026130 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0025860 | RBH | 0.0 | 0.0 | 1.182318 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0025580 | RBH | 0.056688 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0025840 | RBH | 0.189567 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0478400 | RBH | 1.180716 | 10.6696015 | 4.3425465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0024580 | RBH | 0.0 | 0.253193 | 0.097273 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0482400 | RBH | 1.406429 | 4.7038105 | 3.469807 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0025050 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0024880 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0024970 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0025390 | RBH | 0.145482 | 0.376839 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0025570 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G024800 | RBH | 0.000000 | 0.0 | 1.126409 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0024690 | RBH | 0.0 | 0.000000 | 0.000000 |
