Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_04g0018670 | OGI:04075730 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr04:23510990-23511910 | ||||||||
| Gene Symbol | AGP, OsAGP | ||||||||||
| DNA seq | CACTTAATTTTCACTCTCCTTTCGCTAAATCATGACCATCCAGACCAGAGCATGGAGAAAAAAAAAACCAAGCTGCTACTACAAACAGATCATCATCAACAACAACGAACAAATCGAATATCGATCATTCTCAACATACATTGTGTCGATCCCTTCTATGCATGTATGTATCGATCGTGCGTGCACGCATCATCAGCCGTTGACGCGGGAGCACGTCCGGCGGACCTCGCCGTCGGCGCCGGTCCTGACGCCGAGGCTGGTGAGCCTGGCGAACGAGGCCGCCCAGCTGGCGAAGAAGCTCCCCTCGCTCCGCGCGAACGCCTCCACCGTGGCCCGCGTCGTGGCGTTCTGCACCAGCACGGCGTCCGTGCGCAGCAGCCCGCGCCCGGCGAGCAGGTTGGCGAAGTAGGCGTTGTCGAACCGCGACGCCGACCCCTCGTCGCAGTCCACCGCCGCCGTCGACGACACCGTGTTGTTCACCGCCGAGCACGCCCTGATCAGCCCCCCGGCGTAGTCCGCGTTCATCGCCGCGTCCGCGGGCACCGTGCTCCCGTTCGCGTCCACCCGGAACCGCTCCCCGAACGTCGTGCAGTGCGCCGACCCGATGGTGTGCCCCCCTGCGCGCCAGTGCGCCACGCCGGCGATCGACAGCCGTGTGCTCACGGTGAGACCAGGTGAAAAGTGAAAATCGCAGTTGATCCTCCAGCATTCAAGAGCGTGTGTGTGTGTACCTGAGAGGGTGACGAGGTCGTCCAGGGTGAGCCCTTTGGCGGAGAAGCTCCTCGCCATGGCGTCGACGGAGAAGCCGGTGTCGATGATGTTCGCCCTGACGTTGGAGGCCAGCGAGACCAGGCCGTCGAGCCTCCCGAGAGAGACTGGCACCAACGGTCCTCCGGTCTGGTTTGCAGCAGGTGAATGCAT
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| CDS seq | ATGCATTCACCTGCTGCAAACCAGACCGGAGGACCGTTGGTGCCAGTCTCTCTCGGGAGGCTCGACGGCCTGGTCTCGCTGGCCTCCAACGTCAGGGCGAACATCATCGACACCGGCTTCTCCGTCGACGCCATGGCGAGGAGCTTCTCCGCCAAAGGGCTCACCCTGGACGACCTCGTCACCCTCTCAGGGGGGCACACCATCGGGTCGGCGCACTGCACGACGTTCGGGGAGCGGTTCCGGGTGGACGCGAACGGGAGCACGGTGCCCGCGGACGCGGCGATGAACGCGGACTACGCCGGGGGGCTGATCAGGGCGTGCTCGGCGGTGAACAACACGGTGTCGTCGACGGCGGCGGTGGACTGCGACGAGGGGTCGGCGTCGCGGTTCGACAACGCCTACTTCGCCAACCTGCTCGCCGGGCGCGGGCTGCTGCGCACGGACGCCGTGCTGGTGCAGAACGCCACGACGCGGGCCACGGTGGAGGCGTTCGCGCGGAGCGAGGGGAGCTTCTTCGCCAGCTGGGCGGCCTCGTTCGCCAGGCTCACCAGCCTCGGCGTCAGGACCGGCGCCGACGGCGAGGTCCGCCGGACGTGCTCCCGCGTCAACGGCTGA
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| Protein seq | MHSPAANQTGGPLVPVSLGRLDGLVSLASNVRANIIDTGFSVDAMARSFSAKGLTLDDLVTLSGGHTIGSAHCTTFGERFRVDANGSTVPADAAMNADYAGGLIRACSAVNNTVSSTAAVDCDEGSASRFDNAYFANLLAGRGLLRTDAVLVQNATTRATVEAFARSEGSFFASWAASFARLTSLGVRTGADGEVRRTCSRVNG |
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| Function | Peroxidase 18 [UniProtKB/Swiss-Prot:Q9SK52] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_04g0018670 | OsAzu_04g0018670.01 | Chr04 | 23510990 | 23511910 | - | NAM | ||
| CDS seq | ATGCATTCACCTGCTGCAAACCAGACCGGAGGACCGTTGGTGCCAGTCTCTCTCGGGAGGCTCGACGGCCTGGTCTCGCTGGCCTCCAACGTCAGGGCGAACATCATCGACACCGGCTTCTCCGTCGACGCCATGGCGAGGAGCTTCTCCGCCAAAGGGCTCACCCTGGACGACCTCGTCACCCTCTCAGGGGGGCACACCATCGGGTCGGCGCACTGCACGACGTTCGGGGAGCGGTTCCGGGTGGACGCGAACGGGAGCACGGTGCCCGCGGACGCGGCGATGAACGCGGACTACGCCGGGGGGCTGATCAGGGCGTGCTCGGCGGTGAACAACACGGTGTCGTCGACGGCGGCGGTGGACTGCGACGAGGGGTCGGCGTCGCGGTTCGACAACGCCTACTTCGCCAACCTGCTCGCCGGGCGCGGGCTGCTGCGCACGGACGCCGTGCTGGTGCAGAACGCCACGACGCGGGCCACGGTGGAGGCGTTCGCGCGGAGCGAGGGGAGCTTCTTCGCCAGCTGGGCGGCCTCGTTCGCCAGGCTCACCAGCCTCGGCGTCAGGACCGGCGCCGACGGCGAGGTCCGCCGGACGTGCTCCCGCGTCAACGGCTGA
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| Protein seq | MHSPAANQTGGPLVPVSLGRLDGLVSLASNVRANIIDTGFSVDAMARSFSAKGLTLDDLVTLSGGHTIGSAHCTTFGERFRVDANGSTVPADAAMNADYAGGLIRACSAVNNTVSSTAAVDCDEGSASRFDNAYFANLLAGRGLLRTDAVLVQNATTRATVEAFARSEGSFFASWAASFARLTSLGVRTGADGEVRRTCSRVNG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.964707 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0498700 | RBH | 0.0 | 0.0 | 0.478782 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g42100 | RBH | 0.0 | 0.0 | 0.117255 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0498700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0019440 | RBH | 0.0 | 0.0 | 0.395343 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0019150 | RBH | 0.0 | 0.0 | 0.811991 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018880 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019090 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0390100 | RBH | 2.2727135 | 0.0685465 | 28.583905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017880 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0390400 | RBH | 2.807725 | 0.0158395 | 16.062196 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018370 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0018220 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0018320 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018730 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018870 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G018180 | RBH | 0.0 | 0.545779 | 1.630898 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0018110 | RBH | 0.000000 | 0.0 | 0.442455 |
