Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_03g0038000 | OGI:03092830 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr03:35158028-35159745 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTCTGCAATGCAATCTGTCAATCCATTATTACTTTTTTTTCTTTCTGAAAAATAAAGATTTACTGTATATACCTTATGTATACACTTGCTGAATTTTTACCCTTTCTCACAGCTCAAAGGCAGAAAACAGTTACAGCAATTACAGTTTTACCGCAGATCAATATACCGGCGGCGGAGGCGCGTAGTGCACCGGCGGCGGCGGCGGCGGCGGCGACAGCGGCGCGATGCAGCCGTGCGCGTCGCAGTGCACCGGCGGGCGGTGCAGGAACGCGATGCACTCCTCGCCGGAGCGCTGGTCGGGGCGGCCGGCGATGCAGTTCTGGCGGTCGTCAACGTGCGGCACCTCGAGGCAGCGGTGCGGCTCGCCGCAGAAGAAGTTGTGGGAGTAGGTGAAGTTCTTGAGGTGCGGGAGGGCGCAGATGGAGTCCGGGATCTCGCCGGCGAGGCCGTTGTGCGCGACGTTGAGCTGCTCCAGCGCCCGCATGTGGCCGATGGTCTCCGGCAGCGCGCCGGCGAAGTCGTTGAAGCTGAGGTCGAGCACGGTGAGCTTGTCCAGCTTGCCGATCTCCGGCGGGATGCACGACGAGATGCCGCTGTTGAGGAGGACCAGCTCGTTGAGCGTCTCGGCCATGTCGCCGATGCTGCTCGGCAGGCAGCCCCCCAGCTTCGGCAGGTTCGCCAGCACGATCACCGACGCCGTCGAGTTGCTGAAGCTCTCCGTCAGCTTGAAGTCGAAGTTGTTGTTGTTGATGAACAGCGCGTCTATCTTCTTCTCGAATATCGCCGCCGGCACCTCTCCGCACAAGTTGTTAAACCTTCCCCAAACACATTACACAATTACACTTACATCATACTTTACTACGTACAAATACTACTCTCTCTTTGCAATTTTGTACGTATAAAACTATATAAATGAATAATATATGTAGGATATATAATTTTATCATCCTTAAAAAAATACGTGTAAAATTTGATATCTTCGGGTAGTACTAAGCGTATTAAGCTACCAAAAATTTTAATGTAAAATTTAGATATCTCAAAAATATTTTCTCAAGAAACGTAAAATTTTTATGTAGATGTACCTGAGGTCGACGTATTTGAGGTCAGGGAGGCAGAGGAGTTGGGAGGGGAAGGAGCCGGAGAGGTGGTTGTTGCTGACGTCGATCTCGTGGAGGCGGTGGAGGTTGCGGAGGGAGTCGGGGAGGGAGCCGCAGAAGCGGTTGGAGTTGAGGTGGAAGACGGCGAGGTCGGTGAGGAGGCCGAGCTCCTCCGGGAGGGTGCCGGCGAGGTCGCCGTGGTTGAGGTCCACGCCGGCCACCGTGCGCGCGCACGGGTCGTCGGGCGCCGCCGCGCAGTACACGCCGAAGTAGCCGCACACCTCCGGCCCGCACCAGCTGTGCGTCAGGTTCTTGGGGTCGTCGGTGATGGCGCGCTTCAGCGCCTGCAGCGCCACGTACGCCTTCTCCAGCCGCGAGTTGTTCGTCGGCGCCGCCGCCGCCGCCGGCGCCATCGCCGGCTGCTGCGATGACGCCAGCAGCGGCGAGGCCACCACCACCGCCACGAACAGCGCCGCCGCCGCCGCCGCCGAGACGCGCATTCTCGCCATGCAATGAGACGCGTATGGCAGTACAAAGGTTGGTTGCTAGCTACACCTCACCAGCTCACCTCGTATGTTGCTATGAGTAGTAGTTGTGCTACTAATCAGTGTTTAGTACGC
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| CDS seq | ATGGCGAGAATGCGCGTCTCGGCGGCGGCGGCGGCGGCGCTGTTCGTGGCGGTGGTGGTGGCCTCGCCGCTGCTGGCGTCATCGCAGCAGCCGGCGATGGCGCCGGCGGCGGCGGCGGCGCCGACGAACAACTCGCGGCTGGAGAAGGCGTACGTGGCGCTGCAGGCGCTGAAGCGCGCCATCACCGACGACCCCAAGAACCTGACGCACAGCTGGTGCGGGCCGGAGGTGTGCGGCTACTTCGGCGTGTACTGCGCGGCGGCGCCCGACGACCCGTGCGCGCGCACGGTGGCCGGCGTGGACCTCAACCACGGCGACCTCGCCGGCACCCTCCCGGAGGAGCTCGGCCTCCTCACCGACCTCGCCGTCTTCCACCTCAACTCCAACCGCTTCTGCGGCTCCCTCCCCGACTCCCTCCGCAACCTCCACCGCCTCCACGAGATCGACGTGCCGGCGGCGATATTCGAGAAGAAGATAGACGCGCTGTTCATCAACAACAACAACTTCGACTTCAAGCTGACGGAGAGCTTCAGCAACTCGACGGCGTCGGTGATCGTGCTGGCGAACCTGCCGAAGCTGGGGGGCTGCCTGCCGAGCAGCATCGGCGACATGGCCGAGACGCTCAACGAGCTGGTCCTCCTCAACAGCGGCATCTCGTCGTGCATCCCGCCGGAGATCGGCAAGCTGGACAAGCTCACCGTGCTCGACCTCAGCTTCAACGACTTCGCCGGCGCGCTGCCGGAGACCATCGGCCACATGCGGGCGCTGGAGCAGCTCAACGTCGCGCACAACGGCCTCGCCGGCGAGATCCCGGACTCCATCTGCGCCCTCCCGCACCTCAAGAACTTCACCTACTCCCACAACTTCTTCTGCGGCGAGCCGCACCGCTGCCTCGAGGTGCCGCACGTTGACGACCGCCAGAACTGCATCGCCGGCCGCCCCGACCAGCGCTCCGGCGAGGAGTGCATCGCGTTCCTGCACCGCCCGCCGGTGCACTGCGACGCGCACGGCTGCATCGCGCCGCTGTCGCCGCCGCCGCCGCCGCCGCCGGTGCACTACGCGCCTCCGCCGCCGGTATATTGA
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| Protein seq | MARMRVSAAAAAALFVAVVVASPLLASSQQPAMAPAAAAAPTNNSRLEKAYVALQALKRAITDDPKNLTHSWCGPEVCGYFGVYCAAAPDDPCARTVAGVDLNHGDLAGTLPEELGLLTDLAVFHLNSNRFCGSLPDSLRNLHRLHEIDVPAAIFEKKIDALFINNNNFDFKLTESFSNSTASVIVLANLPKLGGCLPSSIGDMAETLNELVLLNSGISSCIPPEIGKLDKLTVLDLSFNDFAGALPETIGHMRALEQLNVAHNGLAGEIPDSICALPHLKNFTYSHNFFCGEPHRCLEVPHVDDRQNCIAGRPDQRSGEECIAFLHRPPVHCDAHGCIAPLSPPPPPPPVHYAPPPPVY |
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| Function | Leucine-rich repeat extensin-like protein 3 [UniProtKB/Swiss-Prot:Q9T0K5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_03g0038000 | OsAzu_03g0038000.01 | Chr03 | 35158186 | 35159634 | - | NAM | ||
| CDS seq | ATGGCGAGAATGCGCGTCTCGGCGGCGGCGGCGGCGGCGCTGTTCGTGGCGGTGGTGGTGGCCTCGCCGCTGCTGGCGTCATCGCAGCAGCCGGCGATGGCGCCGGCGGCGGCGGCGGCGCCGACGAACAACTCGCGGCTGGAGAAGGCGTACGTGGCGCTGCAGGCGCTGAAGCGCGCCATCACCGACGACCCCAAGAACCTGACGCACAGCTGGTGCGGGCCGGAGGTGTGCGGCTACTTCGGCGTGTACTGCGCGGCGGCGCCCGACGACCCGTGCGCGCGCACGGTGGCCGGCGTGGACCTCAACCACGGCGACCTCGCCGGCACCCTCCCGGAGGAGCTCGGCCTCCTCACCGACCTCGCCGTCTTCCACCTCAACTCCAACCGCTTCTGCGGCTCCCTCCCCGACTCCCTCCGCAACCTCCACCGCCTCCACGAGATCGACGTGCCGGCGGCGATATTCGAGAAGAAGATAGACGCGCTGTTCATCAACAACAACAACTTCGACTTCAAGCTGACGGAGAGCTTCAGCAACTCGACGGCGTCGGTGATCGTGCTGGCGAACCTGCCGAAGCTGGGGGGCTGCCTGCCGAGCAGCATCGGCGACATGGCCGAGACGCTCAACGAGCTGGTCCTCCTCAACAGCGGCATCTCGTCGTGCATCCCGCCGGAGATCGGCAAGCTGGACAAGCTCACCGTGCTCGACCTCAGCTTCAACGACTTCGCCGGCGCGCTGCCGGAGACCATCGGCCACATGCGGGCGCTGGAGCAGCTCAACGTCGCGCACAACGGCCTCGCCGGCGAGATCCCGGACTCCATCTGCGCCCTCCCGCACCTCAAGAACTTCACCTACTCCCACAACTTCTTCTGCGGCGAGCCGCACCGCTGCCTCGAGGTGCCGCACGTTGACGACCGCCAGAACTGCATCGCCGGCCGCCCCGACCAGCGCTCCGGCGAGGAGTGCATCGCGTTCCTGCACCGCCCGCCGGTGCACTGCGACGCGCACGGCTGCATCGCGCCGCTGTCGCCGCCGCCGCCGCCGCCGCCGGTGCACTACGCGCCTCCGCCGCCGGTATATTGA
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| Protein seq | MARMRVSAAAAAALFVAVVVASPLLASSQQPAMAPAAAAAPTNNSRLEKAYVALQALKRAITDDPKNLTHSWCGPEVCGYFGVYCAAAPDDPCARTVAGVDLNHGDLAGTLPEELGLLTDLAVFHLNSNRFCGSLPDSLRNLHRLHEIDVPAAIFEKKIDALFINNNNFDFKLTESFSNSTASVIVLANLPKLGGCLPSSIGDMAETLNELVLLNSGISSCIPPEIGKLDKLTVLDLSFNDFAGALPETIGHMRALEQLNVAHNGLAGEIPDSICALPHLKNFTYSHNFFCGEPHRCLEVPHVDDRQNCIAGRPDQRSGEECIAFLHRPPVHCDAHGCIAPLSPPPPPPPVHYAPPPPVY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_03g0038000 | OsAzu_03g0038000.02 | Chr03 | 35158028 | 35159745 | - | IsoSeq | ||
| CDS seq | GTACTAAACACT |
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| Protein seq | VLNT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 25.539106 | 0.904949 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0795300 | RBH | 0.000000 | 0.000000 | 0.423805 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g58110 | RBH | 0.000000 | 0.239013 | 0.102064 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0795300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0004830 | RBH | 0.0 | 36.425777 | 4.797819 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0037690 | RBH | 0.159695 | 26.486937 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0037740 | RBH | 0.0 | 40.954666 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0038050 | RBH | 0.098644 | 1.963769 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0037570 | RBH | 0.000000 | 73.486244 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0565500 | RBH | 5.5957935 | 17.4356385 | 0.566054 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0037360 | RBH | 0.000000 | 2.376276 | 0.173142 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0567200 | RBH | 2.703588 | 4.864718 | 1.050061 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0037900 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0037900 | RBH | 0.0 | 13.038101 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0037510 | RBH | 0.000000 | 58.568760 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0037570 | RBH | 0.000000 | 2.320089 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0037590 | RBH | 0.000000 | 17.373108 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G037370 | RBH | 0.000000 | 1.314103 | 0.654212 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0037150 | RBH | 0.989501 | 40.481712 | 0.000000 |
