Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_02g0029600 | OGI:02079680 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr02:28739848-28742895 | ||||||||
| Gene Symbol | PUP11, OsPUP11 | ||||||||||
| DNA seq | CTCATTCTCGATAGATCCAGATTCGGCATCGGCAACAGCCGCCCGTGCGCCGCCTGAGCCGTCTGCGCCGCCTCCGCACATCCCACGCCGCTCCCTCCATCCTGAGCCGCCTGCGCACTCCCTCCATCCTGCTTCGCCGTCGCCCGTCCAGCGTCCAGTGGCCGACGCTCGCTGCTTGCCGGTTCATGCCCAGGAACCAGATGGCCGGTCCCCAACTGCGGAGCTACCCACGCCGTGATGCTCACTGGTCGCTGTCGGCCTCTCGATGAGCAACCCATGCCGAGTGTCCCTGTGCATCACGGAGGAGGAAGACGAGGTGCAGCCGTGTAGGTGTAACGTACTAACATCCTCCTGTGATTTGTTCAACTGATGATTCATTTGTTGAACACTTGACTCTGTGATTCGTTGCCTCATTACTTTGATACTTAGATACAGTTGCATACTTGGATTTGAACGCTGGTTTGATAATCTGAATTTTTATTGCAAACTTTTTGGTTTTGTTGTATTGGCTCGCGAGCTGAACGAGCTAGCTCAAGCTAGCCGAGCTGATCCAGTCTTCTAGCTCGTTAGAATAACGAGCTGGCTTGGCTTGTTATCCTAGCAAGCCAGACCGAGCCGAGCCGGCTCGATATCCACCCCTATGTGGGCTTGGTCGAGATCGGCTCGTTTTAGCCCCTGACGATAGTAAAACAAGGGATCGGTCGGCGGCTCGCGAAGCGAAAGAAGGAGGAGGCAGTTTTCAGTTTTCACACGACTGCAGCGCCCCACCCTTTCCTACTCTTTTTATTTCCCCACTTGTCTTCCCCCGTGCGGCGCCACACCTCTTCTCATCTTCTCCTCCTATCAACTCCCTCTCTCTCCACCGCTCCGCTTGCCTCGGATCGCGCTCGCGCTCGCGCGGAGCAGCGCCCCCAACGACGGGCATGGCCGGTGACAGCGGCAACAGCGACGGCGGTAGCAACCGGGATGAGGAGGTCCAGATACAGATCGCAGGTCAATCAAATCTTTCCCCCCCTTCCTCTGTCGAAAGCCTCACTGTTTAGCTATGTCCGATTTTCTTCGTTGAGGGAGTGGGGGTGAGGAGGTTAGAGTCGTCTTGCGATGGGCGGCGGTAAACGCAGATGAAATGAACTCGTTCGTTCTCTCGGGCTTATTTGGTGTTCGATGGTGTGGGGAAGTAAGCCCGCGAGGTGTTCGATGAATTGCCTTCTCGTGCGTGGCGTGTTGGATATGGCCATATGCCCATATGGGATTTGTTTTTTGTTTATAGACCATATTAACTTTTCAGACTATCGTGACATCATCGAGTGGCAGAGTAGGCATGTGAGTTTAATTGGCAAACCCCTGTTGTTCGCGTACATGAGCTGGATAAGTGGTTGATGATAGCACCAGCTATAGTAATGCACTGCATTTAACAAAAGTACAATCTTTATATTAGTTTTTTTATATTAGTGCAGGATTTCCCTGAGATTCCAAGTAACTCGCTTTCATTTGATAGTTTCACCAATGGACAATACTGTAAGGATGGAGCTATAGTCTTGTGTTGCTCGACTTTCTCTCAATAAATTTAGAGCTTTTGGGGTTTATATGGCCAATTGTTGGGGGGAAAAAAGGAGAGGAGGGTTTCACTTCACTATGGGAACTTTGGTAGTCTATTTTGAATAGGAAAAGAAAGTTTCAGTTGGCCGTGCTATGCTTAACACATGAAGTTTGGGCTAACCTGTTGATACTGCCTACCTTCTGTAACTTGCAGATTCATCCAAAGCTGCAACTTCGTCAACTCATGAAGTACCTATACAGAACTCTCCTGTCAAGAGTTGGCAATGGTGGCTGATGGTGGGAGTTAACATGTTCTTCCTCATTGCCGGTCAGACCGCATCTACACTTCTTGGGAGGTTCTACTACAATCAAGGCGGCAATAGCAAGTGGATGTCCACATTCGTCCAAACTGCTGGCTTTCCGATTTTGTTCATTGCCCTATTTCTTTTCCATTCAAAGACATCTTCTACACAAACAGTCACTAGTAGTCCTGCCCCTACAATTTCTATCCCCAAAATTACTCTGATATATGTTGTCCTGGGCCTCATCATTGCTGCAGACGACTTGATGTATTCCTATGGCCTACTATATCTTCCGGTCTCAACATATTCGCTCATCTGTGCTAGTCAGCTTGCCTTCAATGCTGTCTTCTCATATTTCCTCAATGCTCAAAAATTCACCCCTCTGATTTTCAATTCCGTAGTCCTCCTTACGTTTTCTGCTTCACTCCTTGGAGTTGATGAAGATTCTCAGGGAACTACTAGTATATCACATGGGAAGTACATTTTGGGTTTCCTGTTGACACTAGGGGCATCAGCTACATACTCGCTCATTCTCTCCCTGATGCAAGTCACATTTGAGAAGGTTATTAAGAGGGAGACCTTCTCAGTTGTGTTGAACATGCAGATATATACAGCTCTCGTGGCAACATTGGCTTCTCTTGTTGGGTTATTTGCAAGTGGTGAATGGATGACTTTACAAGGAGAGATGCATGCATTCCAGTCTGGGAAGCTGTCATATGTAATGACACTGCTGTGGACGGCTATATCTTGGCAGGTAGCATCAGTTGGAGTGGTGGGATTGATCTTTGTGGTGTCATCGCTGTTTTCAAATGTGATAAGCACCCTAGCTCTACCCATCATTCCTGTTTTTGCTGTGATTTTCTTTCATGACAAGATGGATGGAGTAAAGATTATAGCTATGCTGATGGCCATTTGGGGATTTATGTCATATGGCCACCAATTATATGTTGATGGCAAGAAAGGTAGAAAGACTACAGTCAGTGTAGAGGAAACTTCCTAATCATCACAATGTTGCCTAGAATGCCGCTCTTACCAATTTAAGTTGTTGGTTCTGAGTAAGGTACTGTAGTTATTAGGAACCTCATCAAAGAAATTCCATTTTTGCACCATTTGGTATATAACTATACATATTGTCTTGATTACTCTGATGTAAGGATGTATCAAGCAAGAGAATAAATTTTATGTCACCCCCAATTTTCCTTGTCCT
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| CDS seq | ATGGCCGGTGACAGCGGCAACAGCGACGGCGGTAGCAACCGGGATGAGGAGGTCCAGATACAGATCGCAGATTCATCCAAAGCTGCAACTTCGTCAACTCATGAAGTACCTATACAGAACTCTCCTGTCAAGAGTTGGCAATGGTGGCTGATGGTGGGAGTTAACATGTTCTTCCTCATTGCCGGTCAGACCGCATCTACACTTCTTGGGAGGTTCTACTACAATCAAGGCGGCAATAGCAAGTGGATGTCCACATTCGTCCAAACTGCTGGCTTTCCGATTTTGTTCATTGCCCTATTTCTTTTCCATTCAAAGACATCTTCTACACAAACAGTCACTAGTAGTCCTGCCCCTACAATTTCTATCCCCAAAATTACTCTGATATATGTTGTCCTGGGCCTCATCATTGCTGCAGACGACTTGATGTATTCCTATGGCCTACTATATCTTCCGGTCTCAACATATTCGCTCATCTGTGCTAGTCAGCTTGCCTTCAATGCTGTCTTCTCATATTTCCTCAATGCTCAAAAATTCACCCCTCTGATTTTCAATTCCGTAGTCCTCCTTACGTTTTCTGCTTCACTCCTTGGAGTTGATGAAGATTCTCAGGGAACTACTAGTATATCACATGGGAAGTACATTTTGGGTTTCCTGTTGACACTAGGGGCATCAGCTACATACTCGCTCATTCTCTCCCTGATGCAAGTCACATTTGAGAAGGTTATTAAGAGGGAGACCTTCTCAGTTGTGTTGAACATGCAGATATATACAGCTCTCGTGGCAACATTGGCTTCTCTTGTTGGGTTATTTGCAAGTGGTGAATGGATGACTTTACAAGGAGAGATGCATGCATTCCAGTCTGGGAAGCTGTCATATGTAATGACACTGCTGTGGACGGCTATATCTTGGCAGGTAGCATCAGTTGGAGTGGTGGGATTGATCTTTGTGGTGTCATCGCTGTTTTCAAATGTGATAAGCACCCTAGCTCTACCCATCATTCCTGTTTTTGCTGTGATTTTCTTTCATGACAAGATGGATGGAGTAAAGATTATAGCTATGCTGATGGCCATTTGGGGATTTATGTCATATGGCCACCAATTATATGTTGATGGCAAGAAAGGTAGAAAGACTACAGTCAGTGTAGAGGAAACTTCCTAA
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| Protein seq | MAGDSGNSDGGSNRDEEVQIQIADSSKAATSSTHEVPIQNSPVKSWQWWLMVGVNMFFLIAGQTASTLLGRFYYNQGGNSKWMSTFVQTAGFPILFIALFLFHSKTSSTQTVTSSPAPTISIPKITLIYVVLGLIIAADDLMYSYGLLYLPVSTYSLICASQLAFNAVFSYFLNAQKFTPLIFNSVVLLTFSASLLGVDEDSQGTTSISHGKYILGFLLTLGASATYSLILSLMQVTFEKVIKRETFSVVLNMQIYTALVATLASLVGLFASGEWMTLQGEMHAFQSGKLSYVMTLLWTAISWQVASVGVVGLIFVVSSLFSNVISTLALPIIPVFAVIFFHDKMDGVKIIAMLMAIWGFMSYGHQLYVDGKKGRKTTVSVEETS |
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| Function | Probable purine permease 11 [UniProtKB/Swiss-Prot:Q9LPF6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_02g0029600 | OsAzu_02g0029600.01 | Chr02 | 28739848 | 28742895 | + | NAM | ||
| CDS seq | ATGAGCAACCCATGCCGAGTGTCCCTGTGCATCACGGAGGAGGAAGACGAGGTGCAGCCGTATTCATCCAAAGCTGCAACTTCGTCAACTCATGAAGTACCTATACAGAACTCTCCTGTCAAGAGTTGGCAATGGTGGCTGATGGTGGGAGTTAACATGTTCTTCCTCATTGCCGGTCAGACCGCATCTACACTTCTTGGGAGGTTCTACTACAATCAAGGCGGCAATAGCAAGTGGATGTCCACATTCGTCCAAACTGCTGGCTTTCCGATTTTGTTCATTGCCCTATTTCTTTTCCATTCAAAGACATCTTCTACACAAACAGTCACTAGTAGTCCTGCCCCTACAATTTCTATCCCCAAAATTACTCTGATATATGTTGTCCTGGGCCTCATCATTGCTGCAGACGACTTGATGTATTCCTATGGCCTACTATATCTTCCGGTCTCAACATATTCGCTCATCTGTGCTAGTCAGCTTGCCTTCAATGCTGTCTTCTCATATTTCCTCAATGCTCAAAAATTCACCCCTCTGATTTTCAATTCCGTAGTCCTCCTTACGTTTTCTGCTTCACTCCTTGGAGTTGATGAAGATTCTCAGGGAACTACTAGTATATCACATGGGAAGTACATTTTGGGTTTCCTGTTGACACTAGGGGCATCAGCTACATACTCGCTCATTCTCTCCCTGATGCAAGTCACATTTGAGAAGGTTATTAAGAGGGAGACCTTCTCAGTTGTGTTGAACATGCAGATATATACAGCTCTCGTGGCAACATTGGCTTCTCTTGTTGGGTTATTTGCAAGTGGTGAATGGATGACTTTACAAGGAGAGATGCATGCATTCCAGTCTGGGAAGCTGTCATATGTAATGACACTGCTGTGGACGGCTATATCTTGGCAGGTAGCATCAGTTGGAGTGGTGGGATTGATCTTTGTGGTGTCATCGCTGTTTTCAAATGTGATAAGCACCCTAGCTCTACCCATCATTCCTGTTTTTGCTGTGATTTTCTTTCATGACAAGATGGATGGAGTAAAGATTATAGCTATGCTGATGGCCATTTGGGGATTTATGTCATATGGCCACCAATTATATGTTGATGGCAAGAAAGGTAGAAAGACTACAGTCAGTGTAGAGGAAACTTCCTAA
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| Protein seq | MSNPCRVSLCITEEEDEVQPYSSKAATSSTHEVPIQNSPVKSWQWWLMVGVNMFFLIAGQTASTLLGRFYYNQGGNSKWMSTFVQTAGFPILFIALFLFHSKTSSTQTVTSSPAPTISIPKITLIYVVLGLIIAADDLMYSYGLLYLPVSTYSLICASQLAFNAVFSYFLNAQKFTPLIFNSVVLLTFSASLLGVDEDSQGTTSISHGKYILGFLLTLGASATYSLILSLMQVTFEKVIKRETFSVVLNMQIYTALVATLASLVGLFASGEWMTLQGEMHAFQSGKLSYVMTLLWTAISWQVASVGVVGLIFVVSSLFSNVISTLALPIIPVFAVIFFHDKMDGVKIIAMLMAIWGFMSYGHQLYVDGKKGRKTTVSVEETS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_02g0029600 | OsAzu_02g0029600.02 | Chr02 | 28740658 | 28742880 | + | NAM | ||
| CDS seq | ATGGCCGGTGACAGCGGCAACAGCGACGGCGGTAGCAACCGGGATGAGGAGGTCCAGATACAGATCGCAGATTCATCCAAAGCTGCAACTTCGTCAACTCATGAAGTACCTATACAGAACTCTCCTGTCAAGAGTTGGCAATGGTGGCTGATGGTGGGAGTTAACATGTTCTTCCTCATTGCCGGTCAGACCGCATCTACACTTCTTGGGAGGTTCTACTACAATCAAGGCGGCAATAGCAAGTGGATGTCCACATTCGTCCAAACTGCTGGCTTTCCGATTTTGTTCATTGCCCTATTTCTTTTCCATTCAAAGACATCTTCTACACAAACAGTCACTAGTAGTCCTGCCCCTACAATTTCTATCCCCAAAATTACTCTGATATATGTTGTCCTGGGCCTCATCATTGCTGCAGACGACTTGATGTATTCCTATGGCCTACTATATCTTCCGGTCTCAACATATTCGCTCATCTGTGCTAGTCAGCTTGCCTTCAATGCTGTCTTCTCATATTTCCTCAATGCTCAAAAATTCACCCCTCTGATTTTCAATTCCGTAGTCCTCCTTACGTTTTCTGCTTCACTCCTTGGAGTTGATGAAGATTCTCAGGGAACTACTAGTATATCACATGGGAAGTACATTTTGGGTTTCCTGTTGACACTAGGGGCATCAGCTACATACTCGCTCATTCTCTCCCTGATGCAAGTCACATTTGAGAAGGTTATTAAGAGGGAGACCTTCTCAGTTGTGTTGAACATGCAGATATATACAGCTCTCGTGGCAACATTGGCTTCTCTTGTTGGGTTATTTGCAAGTGGTGAATGGATGACTTTACAAGGAGAGATGCATGCATTCCAGTCTGGGAAGCTGTCATATGTAATGACACTGCTGTGGACGGCTATATCTTGGCAGGTAGCATCAGTTGGAGTGGTGGGATTGATCTTTGTGGTGTCATCGCTGTTTTCAAATGTGATAAGCACCCTAGCTCTACCCATCATTCCTGTTTTTGCTGTGATTTTCTTTCATGACAAGATGGATGGAGTAAAGATTATAGCTATGCTGATGGCCATTTGGGGATTTATGTCATATGGCCACCAATTATATGTTGATGGCAAGAAAGGTAGAAAGACTACAGTCAGTGTAGAGGAAACTTCCTAA
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| Protein seq | MAGDSGNSDGGSNRDEEVQIQIADSSKAATSSTHEVPIQNSPVKSWQWWLMVGVNMFFLIAGQTASTLLGRFYYNQGGNSKWMSTFVQTAGFPILFIALFLFHSKTSSTQTVTSSPAPTISIPKITLIYVVLGLIIAADDLMYSYGLLYLPVSTYSLICASQLAFNAVFSYFLNAQKFTPLIFNSVVLLTFSASLLGVDEDSQGTTSISHGKYILGFLLTLGASATYSLILSLMQVTFEKVIKRETFSVVLNMQIYTALVATLASLVGLFASGEWMTLQGEMHAFQSGKLSYVMTLLWTAISWQVASVGVVGLIFVVSSLFSNVISTLALPIIPVFAVIFFHDKMDGVKIIAMLMAIWGFMSYGHQLYVDGKKGRKTTVSVEETS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_02g0029600 | OsAzu_02g0029600.03 | Chr02 | 28739888 | 28742880 | + | IsoSeq | ||
| CDS seq | CCCGTGCGCCGCCTGAGCCGTCTGCGCCGCCTCCGCACATCCCACGCCGCTCCCTCCATCCTGAGCCGCCTGCGCACTCCCTCCATCCTGCTTCGCCGTCGCCCGTCCAGCGTCCAGTGGCCGACGCTCGCTGCTTGCCGGTTCATGCCCAGGAACCAGATGGCCGGTCCCCAACTGCGGAGCTACCCACGCCGTGATGCTCACTGGTCGCTGTCGGCCTCT
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| Protein seq | PVRRLSRLRRLRTSHAAPSILSRLRTPSILLRRRPSSVQWPTLAACRFMPRNQMAGPQLRSYPRRDAHWSLSAS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr02 | 28740173 | 28741601 | + | OsAzu_02g0029600.03 | OsAzu_02g0029600.03,OsAzu_02g0029600.01 | All |
| AF | Chr02 | 28739848 | 28741601 | + | OsAzu_02g0029600.01 | OsAzu_02g0029600.02,OsAzu_02g0029600.01 | All |
| AF | Chr02 | 28739888 | 28741601 | + | OsAzu_02g0029600.03 | OsAzu_02g0029600.03,OsAzu_02g0029600.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.699686 | 9.051480 | 2.864188 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0689200 | RBH | 3.489594 | 1.961761 | 1.428105 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g46380 | RBH | 2.530949 | 0.947062 | 0.830725 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0689200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024590 | RBH | 0.445679 | 0.0 | 2.384026 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029670 | RBH | 0.358723 | 0.626328 | 1.121648 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029530 | RBH | 1.925961 | 4.408923 | 4.821926 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0029120 | RBH | 0.219968 | 0.216888 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0029340 | RBH | 10.094500 | 0.0 | 12.447787 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0459100 | RBH | 4.5044895 | 7.7781245 | 12.124459 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0029140 | RBH | 0.296403 | 0.252516 | 1.337307 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0487100 | RBH | 5.4220455 | 13.5936765 | 4.4047765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029450 | RBH | 0.609897 | 0.074545 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0029190 | RBH | 1.118597 | 5.554059 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029490 | RBH | 5.527301 | 8.563039 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0029340 | RBH | 1.923372 | 0.444618 | 2.479377 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0029020 | RBH | 0.403810 | 2.549748 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029590 | RBH | 0.922836 | 0.0 | 2.813018 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0029350 | RBH | 1.166251 | 7.259490 | 7.436185 |
