Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_01g0021560 | OGI:01066570 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr01:21776722-21779771 | ||||||||
| Gene Symbol | OsRab1B2, OsRas1 | ||||||||||
| DNA seq | TTTCTAAAGGACGTAAAACATCGGATAATTCCACATAAATTTCTACAGTAAAATATCTTACTACGGAGGCAGTGCGCGCCTGGTATGACAAGATTGCACTCCGTCAGCATTTCGTAGCACAGTTTGCAAGTGGAACCATTAATCGAATAAAGTCGAACATCGATGCCACTTGAAACATAGAAATATGAACAGGCAGTTAAAACAGGCCCACAGCATCTGCCGCTTCGTTACAGTTAGGGGACAGACTTTTTCCAATAATATCCGACACAGAACACATCAAGCTTTTTGATAGTACTAATAGACTTAATTTACAGGGATAGAGCAACCAATTAAGTGTTGCTTGGTGCACAAACAAGCACACTATTGTGATCTAGATTGATAATCAAGAGCAGCAGCTGCTTTGCTGGGCAACAGGTTGGCCTCGCATTTGCACGGTTGCAGGCTTGCTTGCATTTGTAGCCGGTTGGCTTGCCATCCTATTCAAACAAAGAACAAGGTGTCAGGTAATGCAAGTGAATGCTAATACCAATAATGATGGTCCAGCAATAGTATGTTCATTTCTATGAATTCTTTCCTTATGTAACTATATATCAGGAGGTCATGATGATTAAGCACAAAATAGCAATTTCCTAGAATAAGCCTTCAAATATCTAGAGGGAATGTCACCTGTTCTTTATCTCTCCTGCCATGGTCATGAATGCCTTCTCCACATTTGTTGCATCCTTCGCACTGGTCTCCAGGAATGGTATTCCAATCTCATCAGCAAGGGCCTGTCAATGATTAAAACATATGTATGCCAGTTGAACAAGGTATAATCCACAAGGAAGTCAAAAGATATTTATGCGAGGGTAATGGAAACACAAAGCAAAAAAATACCTTGCCAGCCTCATAAGAAACCACTCTGTTCTCAGCTAGATCACACTTGTTCCCCACCAAGAGCTTGTTCACATTTTCACTAGCATACCTATCAATTTCATTCAGCCACTGCTTGACATTGTTGAAGCTCTCCTGATCAGTCACATCATAAACAACCTACATAACATACATTACATAATTAGCAAGCACGGGGTAATATTAAGCCATGGGAGATGGATAGTGACATATGTGAAGAGTGCTCACAATGATCCCGTGGGCACCACGGTAGTAGCTGCTTGTAATGGTCCTAAATCGCTCTTGGCCAGCAGTATCCCACTGAAGGAGAACAAGTTGACATATCAGAGCTGAAGTTTCTTAGCAGTCTGGAAAAATGTTACAGCCTTCACTAGAATGGTTTACTTACAATTTGCAGCTTTATTGTCTTCCCATCTTGCTCAACAGTGCGGATTTTCTAGCAGGTCAAACATGGAGTGAAAAGGCTATTAAGGAGAAAAAAAAAAAGGCTCATTTGTGCAAACTTATGCACATGGAAAAATTGAACTTACAAAATCAACACCGATGGTACTGATATAGCTCTCCAGATATGAATCGTCCTGCAAAAGAAATGAGAAGATAGATCCTTTAATCAAGGCCAGGAGGAGCTACCAAACAAAAATATGATGCAGACTATGAATACAGCTGCCATAGCACATGATTCTAGAAGTAAACGCTCTCCCACTTGATCATCATTACTGGTTGCATTTCTGTCAGATGTAATGTTGGAAAATGAGGACATTGAAAACAGAAACTCTCCAGATCTTAACTCGTTTTAGGCGAGTCACTACTACTAACTAAATCAGTATCGACAAGCTTGTCCCGAAAGTATAGTAACTTGAGATGCCACAGACCTTGACAAAATGACCAAAACACCTCAATCTTTTTTCCAAATTGTTCACGGAAACTACCCAAAGCAGAACAAAATTCAGATAAACTCTTATGATTATTTCTATGATTCTACGTAAGATTTTATCATTGGCCAAACAGCAAATAACATTATCAGGGCACCCTACGGAGGAACTTGTCATGCAAATTCAAGTCCATTACAAATCTCCCACGGCATTGTTTTTATCTTGGATCAATGAACATACCCCAAGCAATAAAGCAATCAATGTCTACTTTGTCACCGTTGCCGATGCCAAGTCATTATTCGCAAACATGCATCATACATATGCCTTGAATAAAACCAATTAGGTGATACTCTCTAGTCAAATTTTAAGTATCCTCTTATCTTTCCAATGAACTAAATTGGTGTCTTGAAAGTTCACAGGCTTCTGGCCACTTTGCCCGGGGACTTGCCATACGAGATGCATTCAAATAAACAAAACCTTAAATTATAATCTAAAAAGAAAAAAAAAGAAATCTCAATACAGGGTAAGGAAGCGATCCTCACCGCAAACCTCAGAAGCAGGCAAGACTTCCCGACGCCCGAGTCTCCGATGAGCAGAAGCTTGAAGAGGTAGTCACTGCAGAATCACCCAAGCATCACATCACAGCACATCACATCAAATCAGTAAGTGCACCACAGCAAGCCAAGCAGCCAACGGCACGCAACAAACCCCCAACGAAGCAATAGAAACACTCATGGCGGACGAAGCGCGGAAAAGCGCATCCGAGAGAATCTGCTACTCCCTCCCGCCCTCCCGGCGTGGGGGAGGCGGGGACCAGACGACAGGTAACGACTAACTACCACCACCCACCTCCACAAGCAACCCCGTTCAACGAGAAGCAAGCGGGGGGGCGGACTAGCGCCGCCGCCGGAATCCACGGCTCGGGGAGGCGAATCGGCGGCTCGACGGCGAGATCGGGTCCGCGCGCTTCGCTCCGCTCGACCCCGACTCCACCCACCGCCGCCGACAGCGAATACTCCAGACGGAACTACAGGAGAAGAAGAAGAAGAAGAAGAAGGGGAGACTTACTACTCGGGATTCATGGCGGCGGCGGCGAAGGCGGCGAATCTCCGGGAGGCGAGGCGGCGGAGGCGGCGGCGACGACCGAGGGCGGCGAGGAATTTGGGGGGAGAAAGCGGAGCACGAGGAGGGGAGGGGGGGAAAGGGGGGGTGGAGTGGGAATAAAAAAGGGGGAGAGGAGACGTAGCGGGGGTTGGGGTTTGGGTTGTCGAGTGGGGCACGTCTCGT
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| CDS seq | ATGAATCCCGAGTATGACTACCTCTTCAAGCTTCTGCTCATCGGAGACTCGGGCGTCGGGAAGTCTTGCCTGCTTCTGAGGTTTGCGGACGATTCATATCTGGAGAGCTATATCAGTACCATCGGTGTTGATTTTAAAATCCGCACTGTTGAGCAAGATGGGAAGACAATAAAGCTGCAAATTTGGGATACTGCTGGCCAAGAGCGATTTAGGACCATTACAAGCAGCTACTACCGTGGTGCCCACGGGATCATTGTTGTTTATGATGTGACTGATCAGGAGAGCTTCAACAATGTCAAGCAGTGGCTGAATGAAATTGATAGGTATGCTAGTGAAAATGTGAACAAGCTCTTGGTGGGGAACAAGTGTGATCTAGCTGAGAACAGAGTGGTTTCTTATGAGGCTGGCAAGGCCCTTGCTGATGAGATTGGAATACCATTCCTGGAGACCAGTGCGAAGGATGCAACAAATGTGGAGAAGGCATTCATGACCATGGCAGGAGAGATAAAGAACAGGATGGCAAGCCAACCGGCTACAAATGCAAGCAAGCCTGCAACCGTGCAAATGCGAGGCCAACCTGTTGCCCAGCAAAGCAGCTGCTGCTCTTGA
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| Protein seq | MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMRGQPVAQQSSCCS |
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| Function | Ras-related protein RIC1 [UniProtKB/Swiss-Prot:P40392] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_01g0021560 | OsAzu_01g0021560.01 | Chr01 | 21776722 | 21779771 | - | NAM | ||
| CDS seq | ATGAATCCCGAGTATGACTACCTCTTCAAGCTTCTGCTCATCGGAGACTCGGGCGTCGGGAAGTCTTGCCTGCTTCTGAGGTTTGCGGACGATTCATATCTGGAGAGCTATATCAGTACCATCGGTGTTGATTTTAAAATCCGCACTGTTGAGCAAGATGGGAAGACAATAAAGCTGCAAATTTGGGATACTGCTGGCCAAGAGCGATTTAGGACCATTACAAGCAGCTACTACCGTGGTGCCCACGGGATCATTGTTGTTTATGATGTGACTGATCAGGAGAGCTTCAACAATGTCAAGCAGTGGCTGAATGAAATTGATAGGTATGCTAGTGAAAATGTGAACAAGCTCTTGGTGGGGAACAAGTGTGATCTAGCTGAGAACAGAGTGGTTTCTTATGAGGCTGGCAAGGCCCTTGCTGATGAGATTGGAATACCATTCCTGGAGACCAGTGCGAAGGATGCAACAAATGTGGAGAAGGCATTCATGACCATGGCAGGAGAGATAAAGAACAGGATGGCAAGCCAACCGGCTACAAATGCAAGCAAGCCTGCAACCGTGCAAATGCGAGGCCAACCTGTTGCCCAGCAAAGCAGCTGCTGCTCTTGA
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| Protein seq | MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMRGQPVAQQSSCCS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.981579 | 149.554230 | 45.844982 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0558600 | RBH | 14.556466 | 13.133239 | 45.112053 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g37800 | RBH | 11.473021 | 10.470535 | 12.906612 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0558600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0027390 | SBH | 1.451166 | 49.082157 | 16.633587 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0021180 | RBH | 2.358483 | 26.660881 | 20.235373 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0021490 | RBH | 11.263810 | 291.062347 | 84.748497 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0020880 | RBH | 1.046726 | 4.505089 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0020660 | RBH | 36.344349 | 130.678070 | 94.391251 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0358600 | RBH | 31.2649965 | 66.363468 | 108.5067555 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0020630 | RBH | 1.340781 | 8.927886 | 8.115814 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0349800 | RBH | 44.899996 | 70.15839 | 63.2396315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0020750 | RBH | 1.378454 | 2.208411 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0020650 | RBH | 3.775609 | 86.223091 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0020890 | RBH | 21.594913 | 77.030785 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0020800 | RBH | 5.158830 | 10.770891 | 10.454898 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0020620 | RBH | 1.379168 | 51.803093 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G020490 | RBH | 2.755897 | 23.978201 | 21.242657 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0020220 | RBH | 3.300348 | 129.055878 | 33.165730 |
