Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_01g0002820 | OGI:01007120 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr01:2117871-2119390 | ||||||||
| Gene Symbol | AP2/EREBP129, AP2/EREBP#129, OsRAV2, RAV2, OsRAV9/OsTEM1, OsRAV9, OsTEM1, RAV9, TEM1 | ||||||||||
| DNA seq | ACCACTCTTCATCATCATCTTCTTTGGCTTCTCCCTCTTCACTGCCCTAATTACTTGCTTCTCTCTCCTCTCCTCTCTCTCTCTCTCTCTCTCTCGCTGCAGCCATAGCTTAGCTTTCTTGGTGCCAAGATGGGGGTGGTCAGCTTCTCCTCGACTTCCTCCGGCGCGTCCACTGCCACCACCGAGTCCGGCGGCGCCGTGCGGATGTCGCCGGAGCCGGTGGTGGCGGTGGCGGCGGCGGCTCAACAGCTGCCGGTGGTGAAGGGAGTTGACTCGGCGGATGAGGTGGTGACGTCGAAGCCCGCAGCGGCGGCGGTGGCGCAGCAGTCGTCGAGGTACAAGGGGGTGGTGCCGCAGCCGAACGGGCGGTGGGGGGCGCAGATCTACGAGCGCCACGCGCGGGTGTGGCTCGGGACGTTCCCCGACGAGGAGGCGGCGGCGCGGGCCTACGACGTGGCGGCGCTCCGGTACCGGGGGCGCGACGCGGCCACCAACTTCCCCGGGGCCGCGGCGTCGGCGGCCGAGCTCGCGTTCCTCGCCGCGCACTCCAAGGCCGAGATCGTCGACATGCTGCGGAAGCACACCTACGCCGACGAGCTCCGCCAGGGCCTCCGCCGCGGCCGCGGCATGGGCGCCCGCGCCCAGCCCACGCCATCGTGGGCGCGCGAGCCGCTGTTCGAGAAGGCCGTGACGCCCAGCGACGTCGGCAAGCTCAACCGCCTCGTGGTGCCCAAGCAGCACGCCGAGAAGCACTTCCCGCTCCGCCGCGCGGCGAGCTCCGACTCCGCCTCCGCCGCCGCCACCGGCAAGGGCGTGCTCCTCAACTTCGAGGACGGCGAGGGCAAGGTGTGGCGATTCCGGTACTCGTACTGGAACAGCAGCCAGAGCTACGTGCTGACCAAGGGGTGGAGCCGATTCGTGAGGGAGAAGGGCCTCCGCGCCGGCGACACCATTGTCTTCTCCCGCTCGGCGTACGGCCCCGACAAGCTGCTCTTCATCGACTGCAAGAAGAACAACGCGGCGGTGGCGGCGACCACCACCTGCGCCGGCGACGAGAGGCCAACCACAACCACAAGCGGCGCCGAACCACGCGTCGTGAGGCTCTTCGGCGTCGACATCGCCGGCGGCGATTGCCGGAAGCGGGAGAGGGCGGTGGAGATGGGGCAAGAGGCCTTCCTACTGAAGAGGCAATGCGTGGTTCATCAGCGTACTCCTGTCCTAGGTGCCCTGCTGTTATAGCATCAAATCAAATTCATATATAGATCAAATTAATCAAATCTTCTTCCATCTTTTTGTTGTTCATCGTCTGTTGTTTCATCTTCGATTTAGAGCTGTTCTATCTTCGACTCTTTTCTTTTTTTTGTCTTTATTTTGCATAGAAGTTTGTCAAGTCAGAGATTGCAAATGATCGATCAAGATCGAGCTGTATATGTACAGCCTTATTAGGAAATTAAGTCTAGAGATCATTCAAGTATGTACAATTATCTAATAGTACATAGTAATAAGTTCTGTTTCTTTCC
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| CDS seq | ATGGGGGTGGTCAGCTTCTCCTCGACTTCCTCCGGCGCGTCCACTGCCACCACCGAGTCCGGCGGCGCCGTGCGGATGTCGCCGGAGCCGGTGGTGGCGGTGGCGGCGGCGGCTCAACAGCTGCCGGTGGTGAAGGGAGTTGACTCGGCGGATGAGGTGGTGACGTCGAAGCCCGCAGCGGCGGCGGTGGCGCAGCAGTCGTCGAGGTACAAGGGGGTGGTGCCGCAGCCGAACGGGCGGTGGGGGGCGCAGATCTACGAGCGCCACGCGCGGGTGTGGCTCGGGACGTTCCCCGACGAGGAGGCGGCGGCGCGGGCCTACGACGTGGCGGCGCTCCGGTACCGGGGGCGCGACGCGGCCACCAACTTCCCCGGGGCCGCGGCGTCGGCGGCCGAGCTCGCGTTCCTCGCCGCGCACTCCAAGGCCGAGATCGTCGACATGCTGCGGAAGCACACCTACGCCGACGAGCTCCGCCAGGGCCTCCGCCGCGGCCGCGGCATGGGCGCCCGCGCCCAGCCCACGCCATCGTGGGCGCGCGAGCCGCTGTTCGAGAAGGCCGTGACGCCCAGCGACGTCGGCAAGCTCAACCGCCTCGTGGTGCCCAAGCAGCACGCCGAGAAGCACTTCCCGCTCCGCCGCGCGGCGAGCTCCGACTCCGCCTCCGCCGCCGCCACCGGCAAGGGCGTGCTCCTCAACTTCGAGGACGGCGAGGGCAAGGTGTGGCGATTCCGGTACTCGTACTGGAACAGCAGCCAGAGCTACGTGCTGACCAAGGGGTGGAGCCGATTCGTGAGGGAGAAGGGCCTCCGCGCCGGCGACACCATTGTCTTCTCCCGCTCGGCGTACGGCCCCGACAAGCTGCTCTTCATCGACTGCAAGAAGAACAACGCGGCGGTGGCGGCGACCACCACCTGCGCCGGCGACGAGAGGCCAACCACAACCACAAGCGGCGCCGAACCACGCGTCGTGAGGCTCTTCGGCGTCGACATCGCCGGCGGCGATTGCCGGAAGCGGGAGAGGGCGGTGGAGATGGGGCAAGAGGCCTTCCTACTGAAGAGGCAATGCGTGGTTCATCAGCGTACTCCTGTCCTAGGTGCCCTGCTGTTATAG
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| Protein seq | MGVVSFSSTSSGASTATTESGGAVRMSPEPVVAVAAAAQQLPVVKGVDSADEVVTSKPAAAAVAQQSSRYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRYRGRDAATNFPGAAASAAELAFLAAHSKAEIVDMLRKHTYADELRQGLRRGRGMGARAQPTPSWAREPLFEKAVTPSDVGKLNRLVVPKQHAEKHFPLRRAASSDSASAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSRSAYGPDKLLFIDCKKNNAAVAATTTCAGDERPTTTTSGAEPRVVRLFGVDIAGGDCRKRERAVEMGQEAFLLKRQCVVHQRTPVLGALLL |
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| Function | AP2/ERF and B3 domain-containing protein Os01g0141000 [UniProtKB/Swiss-Prot:Q9AWS0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_01g0002820 | OsAzu_01g0002820.01 | Chr01 | 2117871 | 2119390 | + | NAM | ||
| CDS seq | ATGGGGGTGGTCAGCTTCTCCTCGACTTCCTCCGGCGCGTCCACTGCCACCACCGAGTCCGGCGGCGCCGTGCGGATGTCGCCGGAGCCGGTGGTGGCGGTGGCGGCGGCGGCTCAACAGCTGCCGGTGGTGAAGGGAGTTGACTCGGCGGATGAGGTGGTGACGTCGAAGCCCGCAGCGGCGGCGGTGGCGCAGCAGTCGTCGAGGTACAAGGGGGTGGTGCCGCAGCCGAACGGGCGGTGGGGGGCGCAGATCTACGAGCGCCACGCGCGGGTGTGGCTCGGGACGTTCCCCGACGAGGAGGCGGCGGCGCGGGCCTACGACGTGGCGGCGCTCCGGTACCGGGGGCGCGACGCGGCCACCAACTTCCCCGGGGCCGCGGCGTCGGCGGCCGAGCTCGCGTTCCTCGCCGCGCACTCCAAGGCCGAGATCGTCGACATGCTGCGGAAGCACACCTACGCCGACGAGCTCCGCCAGGGCCTCCGCCGCGGCCGCGGCATGGGCGCCCGCGCCCAGCCCACGCCATCGTGGGCGCGCGAGCCGCTGTTCGAGAAGGCCGTGACGCCCAGCGACGTCGGCAAGCTCAACCGCCTCGTGGTGCCCAAGCAGCACGCCGAGAAGCACTTCCCGCTCCGCCGCGCGGCGAGCTCCGACTCCGCCTCCGCCGCCGCCACCGGCAAGGGCGTGCTCCTCAACTTCGAGGACGGCGAGGGCAAGGTGTGGCGATTCCGGTACTCGTACTGGAACAGCAGCCAGAGCTACGTGCTGACCAAGGGGTGGAGCCGATTCGTGAGGGAGAAGGGCCTCCGCGCCGGCGACACCATTGTCTTCTCCCGCTCGGCGTACGGCCCCGACAAGCTGCTCTTCATCGACTGCAAGAAGAACAACGCGGCGGTGGCGGCGACCACCACCTGCGCCGGCGACGAGAGGCCAACCACAACCACAAGCGGCGCCGAACCACGCGTCGTGAGGCTCTTCGGCGTCGACATCGCCGGCGGCGATTGCCGGAAGCGGGAGAGGGCGGTGGAGATGGGGCAAGAGGCCTTCCTACTGAAGAGGCAATGCGTGGTTCATCAGCGTACTCCTGTCCTAGGTGCCCTGCTGTTATAG
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| Protein seq | MGVVSFSSTSSGASTATTESGGAVRMSPEPVVAVAAAAQQLPVVKGVDSADEVVTSKPAAAAVAQQSSRYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRYRGRDAATNFPGAAASAAELAFLAAHSKAEIVDMLRKHTYADELRQGLRRGRGMGARAQPTPSWAREPLFEKAVTPSDVGKLNRLVVPKQHAEKHFPLRRAASSDSASAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSRSAYGPDKLLFIDCKKNNAAVAATTTCAGDERPTTTTSGAEPRVVRLFGVDIAGGDCRKRERAVEMGQEAFLLKRQCVVHQRTPVLGALLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 16.292223 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0141000 | RBH | 0.0 | 0.165812 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04800 | RBH | 0.0 | 0.105447 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0141000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002810 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002740 | RBH | 0.0 | 14.430961 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002860 | RBH | 0.0 | 4.352559 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002700 | RBH | 0.0 | 0.524829 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002800 | RBH | 0.0 | 15.915834 | 0.739964 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0038200 | RBH | 3.389129 | 46.3707065 | 1.5597105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002730 | RBH | 0.0 | 1.523880 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0038700 | RBH | 4.6503075 | 58.422428 | 0.8912295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002620 | RBH | 0.0 | 0.722736 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002790 | RBH | 0.0 | 37.290695 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002820 | RBH | 0.0 | 39.016632 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002860 | RBH | 0.0 | 0.573440 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002740 | RBH | 0.0 | 9.116995 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002920 | RBH | 0.0 | 5.820862 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002760 | RBH | 0.0 | 53.491833 | 0.0 |
