Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_12g0020070 | OGI:12064520 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr12:24809009-24809581 | ||||||||
| Gene Symbol | WAKL21.2, OsWAKL21.2, OsWAKL21, - | ||||||||||
| DNA seq | tcacctaggctcctcgaccttctcccaccgcgcgaacaggccgccgcccaaacccctctccgccggcgacgagagcgaggcgatgcacgtcagggaggaggacgcggtttcgttgcctccaccaccgccgcacctcgtcgtgcgaagcatggtttcgacggggacgctgcagttggcggtcgtcgcgttccggcagccgcggaggaacaggccggtgcgcgacgacacgccgtagttggcgccggagagccaccgcttggcgtcggagacggtgcggttgcaggagggcgggaaggagacggcgaaggtggaggcggtcgagttgaacgaggcgaccgtgtaggagtgatccgtcgtggcggcggcgttggtcggccggagcagcgccgccgtggagttgctgccgtcgacgttgcaggacagcatgatggggcagctgccggagaagccgaaagggtaggggacgaccaggccgccgcaccggcggctacacccctggccctgggcggcgacggcggtggcttcatgagcgagcaaagcgaagaggaggaggacgaggacgagccactgcat
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| CDS seq | atgcagtggctcgtcctcgtcctcctcctcttcgctttgctcgctcatgaagccaccgccgtcgccgcccagggccaggggtgtagccgccggtgcggcggcctggtcgtcccctaccctttcggcttctccggcagctgccccatcatgctgtcctgcaacgtcgacggcagcaactccacggcggcgctgctccggccgaccaacgccgccgccacgacggatcactcctacacggtcgcctcgttcaactcgaccgcctccaccttcgccgtctccttcccgccctcctgcaaccgcaccgtctccgacgccaagcggtggctctccggcgccaactacggcgtgtcgtcgcgcaccggcctgttcctccgcggctgccggaacgcgacgaccgccaactgcagcgtccccgtcgaaaccatgcttcgcacgacgaggtgcggcggtggtggaggcaacgaaaccgcgtcctcctccctgacgtgcatcgcctcgctctcgtcgccggcggagaggggtttgggcggcggcctgttcgcgcggtgggagaaggtcgaggagcctaggtga
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| Protein seq | MQWLVLVLLLFALLAHEATAVAAQGQGCSRRCGGLVVPYPFGFSGSCPIMLSCNVDGSNSTAALLRPTNAAATTDHSYTVASFNSTASTFAVSFPPSCNRTVSDAKRWLSGANYGVSSRTGLFLRGCRNATTANCSVPVETMLRTTRCGGGGGNETASSSLTCIASLSSPAERGLGGGLFARWEKVEEPR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0020070 | OsARC_12g0020070.01 | Chr12 | 24809009 | 24809581 | - | NAM | ||
| CDS seq | atgcagtggctcgtcctcgtcctcctcctcttcgctttgctcgctcatgaagccaccgccgtcgccgcccagggccaggggtgtagccgccggtgcggcggcctggtcgtcccctaccctttcggcttctccggcagctgccccatcatgctgtcctgcaacgtcgacggcagcaactccacggcggcgctgctccggccgaccaacgccgccgccacgacggatcactcctacacggtcgcctcgttcaactcgaccgcctccaccttcgccgtctccttcccgccctcctgcaaccgcaccgtctccgacgccaagcggtggctctccggcgccaactacggcgtgtcgtcgcgcaccggcctgttcctccgcggctgccggaacgcgacgaccgccaactgcagcgtccccgtcgaaaccatgcttcgcacgacgaggtgcggcggtggtggaggcaacgaaaccgcgtcctcctccctgacgtgcatcgcctcgctctcgtcgccggcggagaggggtttgggcggcggcctgttcgcgcggtgggagaaggtcgaggagcctaggtga
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| Protein seq | MQWLVLVLLLFALLAHEATAVAAQGQGCSRRCGGLVVPYPFGFSGSCPIMLSCNVDGSNSTAALLRPTNAAATTDHSYTVASFNSTASTFAVSFPPSCNRTVSDAKRWLSGANYGVSSRTGLFLRGCRNATTANCSVPVETMLRTTRCGGGGGNETASSSLTCIASLSSPAERGLGGGLFARWEKVEEPR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0595800 | SBH | 0.493152 | 0.710144 | 4.626463 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g41570 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0595800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020350 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020450 | RBH | 0.0 | 1.227772 | 0.179096 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0020790 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020090 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0019660 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0345100 | RBH | 0.0302825 | 1.1043985 | 0.0105035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019560 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0375600 | RBH | 0.1055815 | 1.7052635 | 0.015729 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0019820 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019980 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019140 | SBH | 0.0 | 0.0 | 0.344240 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0020200 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G019750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0019500 | RBH | 0.0 | 0.802482 | 0.158285 |
