Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_12g0018960 | OGI:12063850 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr12:23723155-23723952 | ||||||||
| Gene Symbol | DOF30, OsDof30, Dof30, OsDof-30 | ||||||||||
| DNA seq | tcacatcagctgcggggcgccgccgccgccgtggcgtagcagcccgccgccgccggcgagctccaccggcgccgccgcggcgagctcctgccacagcgctgggaacggggagtacgacacgccggcggccgcggcggcggacttccacgcgtcgccgccctccaggaccctcgccggccacagcagcggcgccggcggcatcgccatcgccccgaagccgagctgctcgccaccgaggaggtcgacgccgatgccgccgccgagccgcccctccagcaccggcgccgcgccgagcagcgacacgagtagtccatcacctccaccccctccgctcgccgccgccgccgccgccgccgcctcatgctggctcatcaccacaggaggcgcctgctgctgctgggcggcaatctgggagccgctcgcgctcgccgcggcggcggcggcgatggcggcggcgacggcggcgcgggcggggcgagaggggcgggggcgcttgcgggtggagccgccgatggggacgttgcggagggagccgccgagcgtccagtagcggcggcaggcgcggcagaagtgccgcggctgcgccgtgttgtagttgttgtagtagcagaacttggtgtccctcgacgcgcaccgcgggcactgctccctccctcctccccccgccgccgccgccatcgccggcggcggcggcaccaccgcctcctgctgctgctgctgctgcacgccgacgacgcgcggcggcggtggcggcggcgggagcagcggcactggcgactggtgcagcggcgcctccat
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| CDS seq | atggaggcgccgctgcaccagtcgccagtgccgctgctcccgccgccgccaccgccgccgcgcgtcgtcggcgtgcagcagcagcagcagcaggaggcggtggtgccgccgccgccggcgatggcggcggcggcggggggaggagggagggagcagtgcccgcggtgcgcgtcgagggacaccaagttctgctactacaacaactacaacacggcgcagccgcggcacttctgccgcgcctgccgccgctactggacgctcggcggctccctccgcaacgtccccatcggcggctccacccgcaagcgcccccgcccctctcgccccgcccgcgccgccgtcgccgccgccatcgccgccgccgccgcggcgagcgcgagcggctcccagattgccgcccagcagcagcaggcgcctcctgtggtgatgagccagcatgaggcggcggcggcggcggcggcggcgagcggagggggtggaggtgatggactactcgtgtcgctgctcggcgcggcgccggtgctggaggggcggctcggcggcggcatcggcgtcgacctcctcggtggcgagcagctcggcttcggggcgatggcgatgccgccggcgccgctgctgtggccggcgagggtcctggagggcggcgacgcgtggaagtccgccgccgcggccgccggcgtgtcgtactccccgttcccagcgctgtggcaggagctcgccgcggcggcgccggtggagctcgccggcggcggcgggctgctacgccacggcggcggcggcgccccgcagctgatgtga
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| Protein seq | MEAPLHQSPVPLLPPPPPPPRVVGVQQQQQQEAVVPPPPAMAAAAGGGGREQCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQHEAAAAAAAASGGGGGDGLLVSLLGAAPVLEGRLGGGIGVDLLGGEQLGFGAMAMPPAPLLWPARVLEGGDAWKSAAAAAGVSYSPFPALWQELAAAAPVELAGGGGLLRHGGGGAPQLM |
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| Function | Dof zinc finger protein MNB1A [UniProtKB/Swiss-Prot:P38564] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0018960 | OsARC_12g0018960.01 | Chr12 | 23723155 | 23723952 | - | NAM | ||
| CDS seq | atggaggcgccgctgcaccagtcgccagtgccgctgctcccgccgccgccaccgccgccgcgcgtcgtcggcgtgcagcagcagcagcagcaggaggcggtggtgccgccgccgccggcgatggcggcggcggcggggggaggagggagggagcagtgcccgcggtgcgcgtcgagggacaccaagttctgctactacaacaactacaacacggcgcagccgcggcacttctgccgcgcctgccgccgctactggacgctcggcggctccctccgcaacgtccccatcggcggctccacccgcaagcgcccccgcccctctcgccccgcccgcgccgccgtcgccgccgccatcgccgccgccgccgcggcgagcgcgagcggctcccagattgccgcccagcagcagcaggcgcctcctgtggtgatgagccagcatgaggcggcggcggcggcggcggcggcgagcggagggggtggaggtgatggactactcgtgtcgctgctcggcgcggcgccggtgctggaggggcggctcggcggcggcatcggcgtcgacctcctcggtggcgagcagctcggcttcggggcgatggcgatgccgccggcgccgctgctgtggccggcgagggtcctggagggcggcgacgcgtggaagtccgccgccgcggccgccggcgtgtcgtactccccgttcccagcgctgtggcaggagctcgccgcggcggcgccggtggagctcgccggcggcggcgggctgctacgccacggcggcggcggcgccccgcagctgatgtga
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| Protein seq | MEAPLHQSPVPLLPPPPPPPRVVGVQQQQQQEAVVPPPPAMAAAAGGGGREQCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQHEAAAAAAAASGGGGGDGLLVSLLGAAPVLEGRLGGGIGVDLLGGEQLGFGAMAMPPAPLLWPARVLEGGDAWKSAAAAAGVSYSPFPALWQELAAAAPVELAGGGGLLRHGGGGAPQLM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0590700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g39990 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0590700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0019190 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0019300 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0019640 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026410 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018560 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0329200 | RBH | 0.445682 | 0.0111615 | 1.737003 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018430 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0358700 | RBH | 0.298039 | 0 | 3.558308 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0018670 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018900 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0018820 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0018850 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019030 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018690 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018380 | RBH | 0.0 | 0.0 | 0.0 |
