Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_12g0016470 | OGI:12058030 | 9/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr12:21212723-21214054 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTATCTCTTCATTTCATCAGGAGATGGATTCATCCAACCAAAAATTCATAGATCTTCTCAGTCAAGACTCTCCAAACCATGCAGAAAAGCCTAGCCACAACTCCCCTCCCCAACAATTCCCCAATAATTTTCCCCAATCTCAGTTTACCCAAAGCTTCAACCCACATTTTTTACACAATTTCTATCCATTTCGTTCCCCAAGCAACTATCCACCATATGGTCATTCTCCTCCCAGCTTTCAAGGTACTCCTCCAAGCTTTCAAGGTATTCCACATCAAGGAAATTGGGCACAACCTAATTTAGCCAGCTTACAAGGTTTCCATTTGCAAGAAAATATGGTGCACTCACCAAATCAGGGGTTTGGAACTGCAAACCACCAAGCAATATTTGCACTGCAACACCCCTCAGTTAGAGCCACTCCCAACAGTTCTTCCCATGGGTCGGAGTCATCGACTCCCTGCCCTGCAAGACAACAAGAAGCGCCAGTTAATCTCGAGTCGTCAAGTGAAAGCAGCGAAGACAGAGGTGAGGAGAGCAACACGCACCAATTGGACAGAAGAGGAGAACTTACGGTTAATTAGTGCTTGGTTGAGCAACTCGGTTGATCCTACAGATGGAAATGACAAAAAGGGAGAGTATTATTGGAAGGATGTGGCTGATGAGTTCAATAACAACCGTCCTACAAATGGCCACAAGAGGACAGTCAAGCAATTGAAGACACACTGGGGAAATGTTAAGAAGGACATTGGGAAGTTTTGTGGAGTTTATGCTCAAGTTAGACGTACCTGTACCAGTGGACACTCTGATGACATGATCATGGAAAAAGCTCATCTATGGTACAAGAATCAATCAAATCAGAAGAAGCCTTTCACCTTAGAGTATATGTGGAGAGAGCTCAAGGATCAACCAAAATGGCGAAGTATTATCAAAAAGGAAGAAAACAAGAACAAGAGGACTAAGATTTCTGAGTCAGGAGCTTACACATCCTCATCAAACCAAGAGACTGAAGAAGAATCATCAAACAAAGAGAGACGCCCCGAGGGACAGAAGAAAGCAAAAGAGAGATTAAAAGGAAAAGGAAAAGGAAAAGCTCAATCTTCTCCGTTGGGGAACCAGCCATCTCAGAACATAGTTTTGTACAACGAAGCTATGAAAATTAAAGCTGAAGCATTATTGAAATCAGCAGAGGCAAAACGGGAACAAATAAGGATGGAAAAGTGGCAGGCATACATTAAACTGGAAGAAAAAGATACCTCTAATTTTAGTGGAGAAAAGCTGAGAAGGCATGAAGCTATGTTGAACAAATTATCTAAAGAACTAGCTGAGGAATAA
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| CDS seq | ATGGATTCATCCAACCAAAAATTCATAGATCTTCTCAGTCAAGACTCTCCAAACCATGCAGAAAAGCCTAGCCACAACTCCCCTCCCCAACAATTCCCCAATAATTTTCCCCAATCTCAGTTTACCCAAAGCTTCAACCCACATTTTTTACACAATTTCTATCCATTTCGTTCCCCAAGCAACTATCCACCATATGGTCATTCTCCTCCCAGCTTTCAAGGTACTCCTCCAAGCTTTCAAGGTATTCCACATCAAGGAAATTGGGCACAACCTAATTTAGCCAGCTTACAAGGTTTCCATTTGCAAGAAAATATGGTGCACTCACCAAATCAGGGGTTTGGAACTGCAAACCACCAAGCAATATTTGCACTGCAACACCCCTCAGTTAGAGCCACTCCCAACAGTTCTTCCCATGGGTCGGAGTCATCGACTCCCTGCCCTGCAAGACAACAAGAAGCGCCAAAGAAAGCAAAAGAGAGATTAAAAGGAAAAGGAAAAGGAAAAGCTCAATCTTCTCCGTTGGGGAACCAGCCATCTCAGAACATAGTTTTGTACAACGAAGCTATGAAAATTAAAGCTGAAGCATTATTGAAATCAGCAGAGGCAAAACGGGAACAAATAAGGATGGAAAAGTGGCAGGCATACATTAAACTGGAAGAAAAAGATACCTCTAATTTTAGTGGAGAAAAGCTGAGAAGGCATGAAGCTATGTTGAACAAATTATCTAAAGAACTAGCTGAGGAATAA
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| Protein seq | MDSSNQKFIDLLSQDSPNHAEKPSHNSPPQQFPNNFPQSQFTQSFNPHFLHNFYPFRSPSNYPPYGHSPPSFQGTPPSFQGIPHQGNWAQPNLASLQGFHLQENMVHSPNQGFGTANHQAIFALQHPSVRATPNSSSHGSESSTPCPARQQEAPKKAKERLKGKGKGKAQSSPLGNQPSQNIVLYNEAMKIKAEALLKSAEAKREQIRMEKWQAYIKLEEKDTSNFSGEKLRRHEAMLNKLSKELAEE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0016470 | OsARC_12g0016470.01 | Chr12 | 21212746 | 21214054 | + | NAM | ||
| CDS seq | ATGGATTCATCCAACCAAAAATTCATAGATCTTCTCAGTCAAGACTCTCCAAACCATGCAGAAAAGCCTAGCCACAACTCCCCTCCCCAACAATTCCCCAATAATTTTCCCCAATCTCAGTTTACCCAAAGCTTCAACCCACATTTTTTACACAATTTCTATCCATTTCGTTCCCCAAGCAACTATCCACCATATGGTCATTCTCCTCCCAGCTTTCAAGGTACTCCTCCAAGCTTTCAAGGTATTCCACATCAAGGAAATTGGGCACAACCTAATTTAGCCAGCTTACAAGGTTTCCATTTGCAAGAAAATATGGTGCACTCACCAAATCAGGGGTTTGGAACTGCAAACCACCAAGCAATATTTGCACTGCAACACCCCTCAGTTAGAGCCACTCCCAACAGTTCTTCCCATGGGTCGGAGTCATCGACTCCCTGCCCTGCAAGACAACAAGAAGCGCCAAAGAAAGCAAAAGAGAGATTAAAAGGAAAAGGAAAAGGAAAAGCTCAATCTTCTCCGTTGGGGAACCAGCCATCTCAGAACATAGTTTTGTACAACGAAGCTATGAAAATTAAAGCTGAAGCATTATTGAAATCAGCAGAGGCAAAACGGGAACAAATAAGGATGGAAAAGTGGCAGGCATACATTAAACTGGAAGAAAAAGATACCTCTAATTTTAGTGGAGAAAAGCTGAGAAGGCATGAAGCTATGTTGAACAAATTATCTAAAGAACTAGCTGAGGAATAA
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| Protein seq | MDSSNQKFIDLLSQDSPNHAEKPSHNSPPQQFPNNFPQSQFTQSFNPHFLHNFYPFRSPSNYPPYGHSPPSFQGTPPSFQGIPHQGNWAQPNLASLQGFHLQENMVHSPNQGFGTANHQAIFALQHPSVRATPNSSSHGSESSTPCPARQQEAPKKAKERLKGKGKGKAQSSPLGNQPSQNIVLYNEAMKIKAEALLKSAEAKREQIRMEKWQAYIKLEEKDTSNFSGEKLRRHEAMLNKLSKELAEE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0016470 | OsARC_12g0016470.02 | Chr12 | 21212723 | 21213647 | + | IsoSeq | ||
| CDS seq | ATGGAAATGACAAAAAGGGAGAGTATTATTGGAAGGATGTGGCTGATGAGTTCAATAACAACCGTCCTACAAATGGCCACAAGAGGACAGTCAAGC |
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| Protein seq | MEMTKRESIIGRMWLMSSITTVLQMATRGQSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.512723 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g36400 | RBH | 4.228297 | 4.003555 | 1.501422 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016670 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016800 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017140 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0293700 | RBH | 0.075033 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018090 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0325900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0009060 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
