Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_12g0015220 | OGI:12054410 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr12:19761370-19766391 | ||||||||
| Gene Symbol | Os_F0684, OsFbox662, Os_F0567 | ||||||||||
| DNA seq | TTAATTTGTCTCTCGGGTCCACTCATATTTTGTGGCGCCATCAAATATGCCACACTCACGGTACTTCCATTCATATGGTGTCCAGAACCCTTGATAACCAGGCACATCAAAATTTGTGTTTTCCCTAACTTCTTCTGGGCTTTGGAGAATGTATGTGTTGTTGAGCTTCACGTTTATCTTCTCAAGAACCGGTGTGTTCTTTAGCAATAGTCGCAAGAGGCTTTTCTGATCATCGCACGGTATAAACCCTTTGAACTCTACCTTCTTTAGATGCTCTAGTCGTATCTTTTGGTCCTCCCAGCCCTCTGGCTGACTGCAATTACACTGAGGATCTGAACATACTTTGAACTGCAATCTAATCTATTATATAATAAAAGTCCATTAAACTTCCTACAAATGCTCCCAAACTGCCACGTGTACCCTACAAACGCTCCCAAGCTGCCACTTGGCACTATGATAAATTATAGAAATTCTTAAAATTCTAAAAAAAAAAGACAACACCCAACCATTGATTTTCATTTAATCTGGTGGACCCGATATTTTTAACCATTAGATCAATCTATAAAGAAAAAATAATCCTCCAATCCCTATCAGTATTGTACCTACGTGGAGTCGTAGTAGGTATACGTACGTACTTGGACCCGTATGCCTCCTCTCTTCCTCCTCTGTTCCCTCTCTTATTTCTTATTCCTATTCTTATGCAATATTAGGTAGAAAGCACAATAGGTGAGCACAATTGACAATTAAACAAATATAACATCTAAACTGCTTATATTTAATCTTTCAAAAAGAATGTCATGTTTTGGTTACAATTTCTGACTTTTACGTGCCATTTAAATAATTCCAAAATATTATGAAAAAATAACGATATAGATTTTATCATCAAACATAATTACACAATAATTAAATTAGAAAATAAATTACTCCCCGGTAAGTCAAAATAATATAATTATACGTGTCTTATATTATATTATATACTATAAACGCTTATAAATTGCCACATGACTCTTTAATAAATTAGAAAAATTCCTACAAATTCTAAGAAAAAAAGAAAAATATCTTTAGCATTGATTTTCATTTAAAATGTTAGACCAATTAATTTTAACCATTAGATCTATATAAAATAATATAATGGTGTGGACCATGCGTACATCGATCTAATGTAAAGGATATGAGAATGGTTATAGCTTCGTTCGTACACTTACGGAAGAAGAAAACATTATATAGTAGTCTAAAAAATCGAGATTCATTTTTCTTTCTGAAACTTAAAAAAATACTAAAAGTCCATTATACTTCCAATAAACATTATCAAGCCACCACATGCATATTCTACAAATGCTCCTAAATCATCACTTTACGCTATAATAAATTAGATAAAATCCTATAAATTCTAAAAAAAAGAAAAATATCTTACCATCGGTTTTCATTCAAATCGGTGGACCTATTAATTTTAACCATTAGATATATATAAATTAATGGTGTGGGCCATATACATTGATCTAACGCAAAGGAAAAGAGATCGGTTATAGCTTCGTTCGTACATATAGAGTACAAGACATTGGATAGTAGTCTAAAAAATTGAGATTAGAAATTCGTATAACGATATGATTAGAAATTTCCTACTAATTTTTATTTTAAGACTCATATTAACTTGGTATTTTTCTTAAAAATACTGTAGGATCCTACGCATAAGAATCACTATCTTACATATGTATATTTGGTCAATTTAAAAAAGGTGATAGCAGGTTAGTAAAAAATATATATTTATGAGCAATTAAAGTTTCTCAAGATTTTTAAAGAAAAAATACAATGAACATTCAATTAAGAAGGGAAACACCTCACTTTAATTTAAACTTATTTTGTTAGACATGTTTTCGAAACGAAATAAAAACATGCCCGCGCAAATGCGCGGGCTACCTTCCTAGTTATATAATAAAAGACATTATGCCAAGTTTAGGATTTATTAATCAATAGTATCCTTTTAAATTGGCATAGAACAGTTAAGAGTTTCTTTTCTATACTATTGTAATATTTACCATCTTGGTATTTCGATTCTCAATACTAATATGTAATCCTCGGTTAAACAATCATTGTATTTAAATATATGACATTGTTACTTAATTCATTTTTTATATGTAACATTGACCACTATGTTTTATTAAAATATAATAATACTATAAAGCTAAAAATTATAATATTTTTAAAAATGCTTATAAAGAAAAAAATTCATATGATTTTTATGTTTACGACTAATTAATAGTAAAGTTTTGAAAGTTTAACTCAATGAAACCGATAGTGTCATATATTTAAATATCAATGAAATACTGTAAATTAGAACCATGCATACGGCCGAGGAACCTTGTGTAGTTTTCTCTAGCTAGTACAATGGATCAAAGAAACCATATATCTTAATTAAGTAAAGTGATGAATATAAATTAAACATGATAAGTGATCATGCTTACCAAGCCAATGACACGAATGGAGAGGTGTTTGATGTTGTTACACTTTGCAATGCTTCTGGCTAGGGTTGCACCTATGGTATGCCCCTTCCACCATGTGTTCACATCTAACCTCAAGTTGGTAACTGTGGGGAGATATGGTATTTCCTTCATGGTGTCCTCCGACGATTCCTGTAATTTTATGTGAGAATTACATATATAATTGAAAAAATATATATCAAACATCAATTTTGCTAATATCCTTCATGGTGTCTACAAATTGAGACACACAAAGATCCATGTTGCATGCTAGCATTACTCGATAAATAAAGTTACATGTTTCTCAGCAAGATTTAATGATGAAAAAAGTAAATTGTATTTGGGCCATATTTTATTACCAAAGTTTCACTTTGTATCATATTTTAACAAATGTTTTCACTTTAAACTACTCTCTCCGTTTCAAGTTATAAGACGTTTTGACTTTTGTCAAAGTCAAACTATTTTAAGTTTGACTAAGTTTGTATATAAATATAGTAATATTTATAATACTAAATTAGTTTTATCAAATCAATAATTGAATATATTTTCATAATAAATTTGTCTTAATTTGGAAATGTTATTATTTTTTCCTACAAACTTAGTCAAACTTAAAGCAGTTTGACTTTGACCAAAGTTAAAATGTCTTATAACGTACCTGTAACAAAGGTAGTATGTGATATTATTATTATTACACTTTGGACTACTCATATCATGTTTCTCTTTTCAAGTACATCAATGTGGCTACAATTAAACCAGTTTCTTGCATACCGATGAACTCTTGAAGCTAAGTAGACCATATAATATATGATGTATTGGATGTGAAGAGTGGTCAAATTTAAAATGGTATAAAGGTAAGTTACCGAGTCGAAAGTAGAAACGTTGAGTATGGGTGGTTCGCAGTATTAAAGTTTCCTATATGCTAGTCGCATATGTCATATATTGGTGTGCATTTATTCTAAAATTATAAGTTTTGAGCAACAATTAATAAAGTCGTATTTAAATTCACTGTAAGTTATTGTAGCCGTTAACAAGTACTCCCCCATTCCCTAAATGTTTGACGCCGTTGACTTTTTTAAACATGTTTAACCGTTTGTTTTATTAAAAACTTTTGTGAAATGTGTAAAACTATATGTATACATAAAAGTATATTTAACAATAAATCAAATGATAGGAAAAAAATTAATAATTACTTAAATTTTTTGAATAAGACGAACGGTCAAACATATTAAAAAAAGTCAACGGCGTCAAATATTTTGGAATGGAGAGAGTAGTACTGTATAATTCTTCATAACAAAAACATATCAAGAGAGAGGTCAAGTAGAGATGACATACGACGCGGAGTGTTAATCTCAGCTCGAGATGATCCACCGCCGTGCAGCTCTTGAGGAGGCGGACGGCGGCGACGTTGGTCTCGTCGTCGTCGCCGCCGTGCGAGAAGAGGGAACTCTTCTTGAGGTGCCGGACGGTCGCCGTCGCGATGACGACCTCCCTGCAGGCTATGCACTCTACGCGGTCCCACGCCAGCGCCTCCAGCCTCGGCGCCGAGACCCTCGCCGGGGCGGGGTCGCCGGAGCACGGCAGGTTGTCGCAGTGGCCGACACGGAGCAGCCGGAGGCCCGGCGCGTCGACGTGGAGGCGGAGCAGGTCGGGGAGGTACACCAGCCGGAGCTCCTCGAGCGTGCCGGCGGCGTCGAGGTGGAGCCGGATGAGGCCGGCGACGTGGCGGAGCTCCAGCCTCCGCAGCCGCGGGCAGCACGGCGACGAGAGGAGGTGGCCGAGGCGGAGGTCGCCGTTATCGTATGCGCTGATGTTGGCGCGGCAGAGGGTGAAGTCGGTGAGCGCGTGGAAGGCTCCGGCGCCGGCGATCGGGACGACGGTGTTGGCGCCACCGAGGGTAATGCTCATGGCCTCCGCTCTCGACGAGGCTGGCAACTCGACAACCTCCTCCTCCTCCTCCTCCTCCTCTTCCAGCTCCGGCGCCGGTGACTCCTCTTCTTGATAGTCCTGCTCCGCCGTCGACGTTTCCTCCGCTCGATCCAGCGCCGCCGCGGCGGCGGCGTTCAACGGGACCTCGAGGACGAAGCTGCCCTTCACGTGGCGCTCGGCGAAGCGGAGCCACGAGTCGACGAGCGGCGGCGTGACGTCAGCCTCGTGGCGGTGGTCGTGGAAGTAGAACCTCTTCCCCACGGGCACCCGCTTGAAGGTGCCGTGCTTGGATTCCGAGGTGTCGGTGTACACCAGGGAGATCTCGAGCACGTCGACGTCGGCGGCGGCGGCCGCGCCGCCGCGCGAGGCAGGCGTCCACGCCGGCGATGAGGCGCCGGGCGGCGTCGTGGCAACGTGCGGAGGAGGAGACGTCGAAGCGGAGGCATGGCGCGATGCCGCAGAGGTGGCGCCACCGCTTCGACAGCACGGCGGCGCGCGCCACGTCTCTCGCCGACGGCAGCAGGCCGAGGATGCGCAGGAGCACGTCGTCGTTGAGCTCGCTGATCAGATCGACGGCCGCCGCCGCCGCCGCCGACGTCGCCGTCTCGTTCATTTCCAT
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| CDS seq | ATGGAAATGAACGAGACGGCGACGTCGGCGGCGGCGGCGGCGGCCGTCGATCTGATCAGCGAGCTCAACGACGACGTGCTCCTGCGCATCCTCGGCCTGCTGCCGTCGGCGAGAGACGTGGCGCGCGCCGCCGTGCTGTCGAAGCGGTGGCGCCACCTCTGCGGCATCGCGCCATGCCTCCGCTTCGACATCTCCCTGGTGTACACCGACACCTCGGAATCCAAGCACGGCACCTTCAAGCGGGTGCCCGTGGGGAAGAGGTTCTACTTCCACGACCACCGCCACGAGGCTGACGTCACGCCGCCGCTCGTCGACTCGTGGCTCCGCTTCGCCGAGCGCCACGTGAAGGGCAGCTTCGTCCTCGAGGTCCCGTTGAACGCCGCCGCCGCGGCGGCGCTGGATCGAGCGGAGGAAACGTCGACGGCGGAGCAGGACTATCAAGAAGAGGAGTCACCGGCGCCGGAGCTGGAAGAGGAGGAGGAGGAGGAGGAGGAGGTTGTCGAGTTGCCAGCCTCGTCGAGAGCGGAGGCCATGAGCATTACCCTCGGTGGCGCCAACACCGTCGTCCCGATCGCCGGCGCCGGAGCCTTCCACGCGCTCACCGACTTCACCCTCTGCCGCGCCAACATCAGCGCATACGATAACGGCGACCTCCGCCTCGGCCACCTCCTCTCGTCGCCGTGCTGCCCGCGGCTGCGGAGGCTGGAGCTCCGCCACGTCGCCGGCCTCATCCGGCTCCACCTCGACGCCGCCGGCACGCTCGAGGAGCTCCGGCTGGTGTACCTCCCCGACCTGCTCCGCCTCCACGTCGACGCGCCGGGCCTCCGGCTGCTCCGTGTCGGCCACTGCGACAACCTGCCGTGCTCCGGCGACCCCGCCCCGGCGAGGGTCTCGGCGCCGAGGCTGGAGGCGCTGGCGTGGGACCGCGTAGAGTGCATAGCCTGCAGGGAGGTCGTCATCGCGACGGCGACCGTCCGGCACCTCAAGAAGAGTTCCCTCTTCTCGCACGGCGGCGACGACGACGAGACCAACGTCGCCGCCGTCCGCCTCCTCAAGAGCTGCACGGCGGAATCGTCGGAGGACACCATGAAGGAAATACCATATCTCCCCACAGTTACCAACTTGAGGTTAGATGTGAACACATGGTGGAAGGGGCATACCATAGGTGCAACCCTAGCCAGAAGCATTGCAAAGTGTAACAACATCAAACACCTCTCCATTCGTGTCATTGGCTTGAAAAGCCTCTTGCGACTATTGCTAAAGAACACACCGGTTCTTGAGAAGATAAACGTGAAGCTCAACAACACATACATTCTCCAAAGCCCAGAAGAAGTTAGGGAAAACACAAATTTTGATGTGCCTGGTTATCAAGGGTTCTGGACACCATATGAATGGAAGTACCGTGAGTGTGGCATATTTGATGGCGCCACAAAATATGAGTGGACCCGAGAGACAAATTAA
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| Protein seq | MEMNETATSAAAAAAVDLISELNDDVLLRILGLLPSARDVARAAVLSKRWRHLCGIAPCLRFDISLVYTDTSESKHGTFKRVPVGKRFYFHDHRHEADVTPPLVDSWLRFAERHVKGSFVLEVPLNAAAAAALDRAEETSTAEQDYQEEESPAPELEEEEEEEEEVVELPASSRAEAMSITLGGANTVVPIAGAGAFHALTDFTLCRANISAYDNGDLRLGHLLSSPCCPRLRRLELRHVAGLIRLHLDAAGTLEELRLVYLPDLLRLHVDAPGLRLLRVGHCDNLPCSGDPAPARVSAPRLEALAWDRVECIACREVVIATATVRHLKKSSLFSHGGDDDETNVAAVRLLKSCTAESSEDTMKEIPYLPTVTNLRLDVNTWWKGHTIGATLARSIAKCNNIKHLSIRVIGLKSLLRLLLKNTPVLEKINVKLNNTYILQSPEEVRENTNFDVPGYQGFWTPYEWKYRECGIFDGATKYEWTRETN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0015220 | OsARC_12g0015220.01 | Chr12 | 19761370 | 19766391 | - | NAM | ||
| CDS seq | ATGGAAATGAACGAGACGGCGACGTCGGCGGCGGCGGCGGCGGCCGTCGATCTGATCAGCGAGCTCAACGACGACGTGCTCCTGCGCATCCTCGGCCTGCTGCCGTCGGCGAGAGACGTGGCGCGCGCCGCCGTGCTGTCGAAGCGGTGGCGCCACCTCTGCGGCATCGCGCCATGCCTCCGCTTCGACATCTCCCTGGTGTACACCGACACCTCGGAATCCAAGCACGGCACCTTCAAGCGGGTGCCCGTGGGGAAGAGGTTCTACTTCCACGACCACCGCCACGAGGCTGACGTCACGCCGCCGCTCGTCGACTCGTGGCTCCGCTTCGCCGAGCGCCACGTGAAGGGCAGCTTCGTCCTCGAGGTCCCGTTGAACGCCGCCGCCGCGGCGGCGCTGGATCGAGCGGAGGAAACGTCGACGGCGGAGCAGGACTATCAAGAAGAGGAGTCACCGGCGCCGGAGCTGGAAGAGGAGGAGGAGGAGGAGGAGGAGGTTGTCGAGTTGCCAGCCTCGTCGAGAGCGGAGGCCATGAGCATTACCCTCGGTGGCGCCAACACCGTCGTCCCGATCGCCGGCGCCGGAGCCTTCCACGCGCTCACCGACTTCACCCTCTGCCGCGCCAACATCAGCGCATACGATAACGGCGACCTCCGCCTCGGCCACCTCCTCTCGTCGCCGTGCTGCCCGCGGCTGCGGAGGCTGGAGCTCCGCCACGTCGCCGGCCTCATCCGGCTCCACCTCGACGCCGCCGGCACGCTCGAGGAGCTCCGGCTGGTGTACCTCCCCGACCTGCTCCGCCTCCACGTCGACGCGCCGGGCCTCCGGCTGCTCCGTGTCGGCCACTGCGACAACCTGCCGTGCTCCGGCGACCCCGCCCCGGCGAGGGTCTCGGCGCCGAGGCTGGAGGCGCTGGCGTGGGACCGCGTAGAGTGCATAGCCTGCAGGGAGGTCGTCATCGCGACGGCGACCGTCCGGCACCTCAAGAAGAGTTCCCTCTTCTCGCACGGCGGCGACGACGACGAGACCAACGTCGCCGCCGTCCGCCTCCTCAAGAGCTGCACGGCGGAATCGTCGGAGGACACCATGAAGGAAATACCATATCTCCCCACAGTTACCAACTTGAGGTTAGATGTGAACACATGGTGGAAGGGGCATACCATAGGTGCAACCCTAGCCAGAAGCATTGCAAAGTGTAACAACATCAAACACCTCTCCATTCGTGTCATTGGCTTGAAAAGCCTCTTGCGACTATTGCTAAAGAACACACCGGTTCTTGAGAAGATAAACGTGAAGCTCAACAACACATACATTCTCCAAAGCCCAGAAGAAGTTAGGGAAAACACAAATTTTGATGTGCCTGGTTATCAAGGGTTCTGGACACCATATGAATGGAAGTACCGTGAGTGTGGCATATTTGATGGCGCCACAAAATATGAGTGGACCCGAGAGACAAATTAA
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| Protein seq | MEMNETATSAAAAAAVDLISELNDDVLLRILGLLPSARDVARAAVLSKRWRHLCGIAPCLRFDISLVYTDTSESKHGTFKRVPVGKRFYFHDHRHEADVTPPLVDSWLRFAERHVKGSFVLEVPLNAAAAAALDRAEETSTAEQDYQEEESPAPELEEEEEEEEEVVELPASSRAEAMSITLGGANTVVPIAGAGAFHALTDFTLCRANISAYDNGDLRLGHLLSSPCCPRLRRLELRHVAGLIRLHLDAAGTLEELRLVYLPDLLRLHVDAPGLRLLRVGHCDNLPCSGDPAPARVSAPRLEALAWDRVECIACREVVIATATVRHLKKSSLFSHGGDDDETNVAAVRLLKSCTAESSEDTMKEIPYLPTVTNLRLDVNTWWKGHTIGATLARSIAKCNNIKHLSIRVIGLKSLLRLLLKNTPVLEKINVKLNNTYILQSPEEVRENTNFDVPGYQGFWTPYEWKYRECGIFDGATKYEWTRETN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0527500 | SBH | 0.000000 | 0.128595 | 2.677134 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g34240 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0527500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015380 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015520 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015900 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015210 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014780 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0271600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014930 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0302600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0015140 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0015320 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0015430 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015330 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G015400 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0015150 | RBH | 0.0 | 0.0 | 0.0 |
