Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_12g0009830 | OGI:12029880 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr12:10676402-10683462 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcggccggcgtcccgactcccgagcgcgccagtgcggggcggggcgtcgttgctggccgcgccgcctcctcctcctcctcctccccccaccaccagtccaccacctccctgatcgaatcgaatcgaatcggaatcgaagcgggcgcccacttgaccaaaaaaattatccgttagaatcgcgcggagctcgtgcttctcttctcgagtcgaagccttgcctaccttaacatcgcgacggctgcgctgcctgccacccccaccacccccagatccggagatcccgcgcggcgcggagcacactggagcggtgcgagctggtgctgcaatggcggcccgcccctgatccgatccacaccaccccgccccatggactccgcccgtagctggctccagaagcttcagccgcgggacaaggacaggggcaagccggcgtcgcccaccgccgcgaggaaggacgaagcggcggcgatggccgaggatggggaggaggcgatctcgagcaccaccgccaccaaggtggcggccgccaagcagttcatcgagaaccactacaaggaccagatgaggtcgctcgaggagcgcaaggagaggtcagtccccccgctcgctcactcagcctgttatagatcggctaatcgatcggggattgctattgttcggaaatgcgcgtgcgcgttgttcctgggttggaattcgtagggtgatcttcgaactggagctcctcaaggtcgatttgctgtgctcttttattaaacaattattattatgatctgggttccgagttacttgttaggtggtcactatagtagaatacttgcaattttatgacggcgcattagttacgtgttaataacgctaaaataaaccaggagtatattgggtgtatggcaatacagtaatgggaatatgtaggattgtggagggtaaaatgattctatttttggcatgatgttaaatgaggtaaggagatgtgccacttggactagaatattccctccgactcaaaaaaaaacccaacctaggataggatagaatctattgacaacgaatctggataagcgcttgtccggattcgttgtcctagaatagatcacatcctatcctaggctgggtttttcttttgagacggagggagtaacttggaaggaggtaataaaggggtccattatctccaatttttttacttccttggcctatgtatgtgctactgctttgctgattgacctgctccacaacgaagtttcgcctgagtgttctttcataatgatatctcaattgtaataatttacagcttggacttgcattttgttaatatagttaactgctagtcttcattctttgttgttattttatctcttttgagaaaacggcatatgtaggactatttgtatctcatctatttgcaaaggttgacaaactgcaagccttcttttgtaatgtggcatacaccaaccaaatagggtaggaagaaactatgcttattaataaaacctaaaagtaccaaagttttggcaagaacaagggtaaggctcaatactagaaatgtaaacttgaactatatagccaacagcttctttaaattgcttttagtacccatattatatctctggactgcttgtagccatgcactctgttaaactagtttataccccgcactttgctgtgggatatgtggatgaatgcatgttatacattatagaaatgatagatatatatgtttaaataatgtgaaaaatgatctggagataatgatttaacattgcttgtatattgagttctaaaaatacaacaaaattgttaatgatatgtcatgtttgcatgatatttaaaatactctagataataattgctagtggatgatgatgtggtacacttgcatgtgattgaaaatactctagataataattgctagtgggtgatgatgtgacacacttacatgttgagatttatgagttagtgggcatcaactatatagatagtatagatgtgtaccatttcatatggaactatcacatgactatacaacctatcttcttaggtttctgaataatgaaatatagatgttggattgaacttactataaatcttcttggggcttgactgggaagcattcagtgttattctctgccttaaattgttaaacacaatgcatgtgcaatccttgaattttattaatgaactgtattaatattctgtcattttcggaagtgttctctaagggaagatggtatgcataaataaaaatatgtagcataaagcgcttaactattgcattacagcatcataagaggctattcacagttctcttattgccattttttgtgattgatatttgataactctccaatttcaatctttttgtatgtttcagtaagatgctatatattagttttggatatacatttctggcgtagtttagatatcatcgaacacccattcttatttggtggtaaagatattatgccaaattatattataggcgtcggatgctggagagtaagcttgcagatcctgatgtatctgaagaggagcaaaacaatattctgaaggacttcgaaaatagggagagagaaatcatgcgctcaaggaggcacaaaatgggtgttgatgattttgaattgcttaccattattggcagaggtgcatttggggaggtaagaagggcactgtttctactccctatattcgatgcagatatagttgactgttgtgtcatgcgtaataaacatcagtttctgcagtaccttgagaaaccttttattatacatggagaaaagaaatctatttttagaggcaatatatatgttctctgtttctcctgcagcttgcctccagtttacatttttattcttcaggtgaggctctgtagagagaaagctacatccaatgtatatgcaatgaaaaagcttaagaagtctgaaatgttacgaaggggccaggtaattcatgtgtgtttaagtaattaaatcagcttgtccagcaaacttttggttttctaatgtgttcttttcaggttgagcatgtgagagctgaaaggaatcttcttgcagaggttgacagtgcctacattgttaagctttattgctcatttcaagacgaagagtttctataccttgttatggaataccttcctggtggtgacatgatgactctactaatgcgcaaggatacacttacagatgatgaatctagattttatgttgcggagacaattctagcaattgaatccatacacaagcacaattatattcataggtaattcattgataataaaaattgcatggcattcggtagcaaatttgccactccatctttgctatacattttcagggatatcaagcctgacaatttgctgttagaccgaactgggcacctgaagctttcagattttggcttatgcaaacctctagatagtactagctttccaaatctgagtgagtttgactatgcagtggggaaaaacattaatccgtcaatggatggtgataaactattaagtagctctgctgctcccaggaggacacaacaggaacagctattgcattggcagaagaatcggcggatgctggtatgttaaaatgctttatagtagcatttttcctcttgtctaattgcttaattctatatgcattccctagccagggcaaatcctaggcccaaacacgtacagaggacattctgtatgcatcacaatcatttgggcccttttggattagaggactttaagatagaccccttcagtgtggtagggatataagttcagtttctatacctatctgaacagaattgattaaattcaatctatccaatctaggcctaaacatgcatgcctgatgtgaaagtattccacatgtttgctagaagaagtcaagtatatttacgtaattttagctattatatgtaaagcaaatgcatgacgagatgattgactgtacagtcaaacagttcccattagttcatgatgaaaacgattacactgcattctgcataagatgaaaatgaacacatccaaaatgtcgatagaaaattgtagaaaaaatggcatggtaatcatttgtttgccaaagagccttggcagtgtgttttttatgtatttactttcatgataattgcaggcttattcaacagttggtacacctgattacattgctccggaggtactattgaagaaaggatatggaatggagtgtgacttgttagtacactttaatgaacttttgcagttcatgtcctaatgttttatatctctctcatatttgtactttataggtggtcacttggagccattatgtatgagatgcttgtgggttatccaccattttattcggaagatccaatgtccacatgtaggaaggtaactttaaatgctatagctaagccatgtcccttcaaagacttgtggatttgtatgtgaattctttctattaacttttgagttcaactttacagatagtgaactggagaagtcatctaaaattccctgaagaggccaaactgtcaccagaagctaaagatcttattagcaaactattatgtaacgcggatttgaggcttggaacaaaaggagcacatgagataaaggtgaaagtggttcacatgatctgttacatccttcatgtttgtaagtttggtaatttatagcatgatgtgttcttacaggcacacccgtggttcaaaggtcttgagtgggagaagctatatcagatggaggctgcttttattcctgaggttaatgacgagttggacacacaaaattttgagaaatttgaggaggtgaggtgtcattacgaagctattttggccagttaatggttccaactttttctctatacatattagagtacatgtctcaagtcaactttaaaaactttgaacatcaatatcttatagaatatttagactgtatgtttagaaaatatatgcatagatttgtccaaaagcactatattatttttattgttattattttatttagtttttcaaatattttgcaagcaaatagttgtcaaagttgaattctgaagacatatttgatgtccaaaatgacatgtttcatgactggagggagcattaatttactgatagcagaagtttcacattgtgtgaagtcctgaatgtttctgcttaccctgctagattttatttgcatggtcacacaagacagtactaggatagctagcacatttgctttcataacctcgctatcgcatgattaaaaataatatcttgatgcagcagccaacaaaagaaatagtgttcatatcactaaagccctctggccagaatgggaagcaccatcttattattacatattccaaaagcagaagccacgcatcgttatattaagaagaagaaaatgaatctagaagactcaaacatgcccattagggcaaggtgtaatacatgacgacttgccaaagaaatagaaagggccatggccggtggcctatacaaacaacatgtactgccaaatgttagcaaggcctttagccccagctatacaccacaacctggccaacctaatgtagcagcagccatcgttgatgagagaaaccaaagcacatcagccaccattttagttggtaaatgctactaagttatcagggatctgacaagagggaaatgagctttttagccattcagtacactctgggatattatcattagttcatttggccttgtttgtttgactatgtcacaccctttattgcatctagtgttgtgtgaagaaaatatacactgaggcggcagatatttgtacattggcaagtccaatatattgtggctcttgtaacctgacttatttcatcagtgcttacctagtgacctttgtgtgtttggtgtcttgcagattgctccaatgcaaacttcatcaaaggcaggtccttggagaaaggtgcacttttttgcagagatcaggcgaccatttgcttttagttttttgtattgtcaatatattggaggatacatttttatttcaaaattactaagggtcgcttcaggctagcgatattttctcttactcttcctgtaggacaatgtttgcatttgaaataaaagtgtgattcgtcatattttaattaccttgtgaccttttttttttctgactctaggtcctgactaaatgtttctattgtgcagatgctttcctccaaggacacgaattttctcaattttacctacaaaaaccttgaactatcagatgatcctgaacatccaggaataggttggttcctttcctagtctactggcatttattccttgcaaaaccttgtaaaaattgtcttggacatagttttgtgctttacacattatttgtaaccatttatcttttggctctgcagctcaagtaaagaaaaagaataacaagccaacgaggcggacctttaaatcaatattgcatggtaaaaggctgtaacacagactcagatatgggatattgtcataatatttacgttgctttccctgacattttacagaatttgctgatactgaagaggaacctcaaagcagttccttgaactcaacgccatcacaattggatcagttgcccgagagccttgagccttctcctcactctagtatctcctcagaagattcacagtcgcggcatagatagcagttgtaatctgaagtggcaaaaagggtacataatgctatccgcagaacttaacggctattcagaagacaaatttggatgtatagaaaagctcctataaatttgcttttagataggcggtggggtgttccaatagccattttcttatattggagcctttagcatttgtttaccgacaatgccgtgcaatttggtttacattggggaggggtatccgtattcttctggtctgtaaattcctggattctgtcattctatacagggttgagattcattcttcggagggaacgtgtcatgcgtatgccgctagttctttttttttgggggtggggaggtggcagaaatctgcatgtccaccttgtcatcacatttgctgcaacgcaaatttctgagaaacaaagaaaacatgtactatcaagatgcatcataaaacaattgtttc
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| CDS seq | atggactccgcccgtagctggctccagaagcttcagccgcgggacaaggacaggggcaagccggcgtcgcccaccgccgcgaggaaggacgaagcggcggcgatggccgaggatggggaggaggcgatctcgagcaccaccgccaccaaggtggcggccgccaagcagttcatcgagaaccactacaaggaccagatgaggtcgctcgaggagcgcaaggagaggcgtcggatgctggagagtaagcttgcagatcctgatgtatctgaagaggagcaaaacaatattctgaaggacttcgaaaatagggagagagaaatcatgcgctcaaggaggcacaaaatgggtgttgatgattttgaattgcttaccattattggcagaggtgcatttggggaggtgaggctctgtagagagaaagctacatccaatgtatatgcaatgaaaaagcttaagaagtctgaaatgttacgaaggggccaggttgagcatgtgagagctgaaaggaatcttcttgcagaggttgacagtgcctacattgttaagctttattgctcatttcaagacgaagagtttctataccttgttatggaataccttcctggtggtgacatgatgactctactaatgcgcaaggatacacttacagatgatgaatctagattttatgttgcggagacaattctagcaattgaatccatacacaagcacaattatattcatagggatatcaagcctgacaatttgctgttagaccgaactgggcacctgaagctttcagattttggcttatgcaaacctctagatagtactagctttccaaatctgagtgagtttgactatgcagtggggaaaaacattaatccgtcaatggatggtgataaactattaagtagctctgctgctcccaggaggacacaacaggaacagctattgcattggcagaagaatcggcggatgctggcttattcaacagttggtacacctgattacattgctccggaggtactattgaagaaaggatatggaatggagtgtgacttgtggtcacttggagccattatgtatgagatgcttgtgggttatccaccattttattcggaagatccaatgtccacatgtaggaagatagtgaactggagaagtcatctaaaattccctgaagaggccaaactgtcaccagaagctaaagatcttattagcaaactattatgtaacgcggatttgaggcttggaacaaaaggagcacatgagataaaggcacacccgtggttcaaaggtcttgagtgggagaagctatatcagatggaggctgcttttattcctgaggttaatgacgagttggacacacaaaattttgagaaatttgaggagattgctccaatgcaaacttcatcaaaggcaggtccttggagaaagatgctttcctccaaggacacgaattttctcaattttacctacaaaaaccttgaactatcagatgatcctgaacatccaggaatagctcaagtaaagaaaaagaataacaagccaacgaggcggacctttaaatcaatattgcatgaatttgctgatactgaagaggaacctcaaagcagttccttgaactcaacgccatcacaattggatcagttgcccgagagccttgagccttctcctcactctagtatctcctcagaagattcacagtcgcggcatagatag
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| Protein seq | MDSARSWLQKLQPRDKDRGKPASPTAARKDEAAAMAEDGEEAISSTTATKVAAAKQFIENHYKDQMRSLEERKERRRMLESKLADPDVSEEEQNNILKDFENREREIMRSRRHKMGVDDFELLTIIGRGAFGEVRLCREKATSNVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSAYIVKLYCSFQDEEFLYLVMEYLPGGDMMTLLMRKDTLTDDESRFYVAETILAIESIHKHNYIHRDIKPDNLLLDRTGHLKLSDFGLCKPLDSTSFPNLSEFDYAVGKNINPSMDGDKLLSSSAAPRRTQQEQLLHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDLWSLGAIMYEMLVGYPPFYSEDPMSTCRKIVNWRSHLKFPEEAKLSPEAKDLISKLLCNADLRLGTKGAHEIKAHPWFKGLEWEKLYQMEAAFIPEVNDELDTQNFEKFEEIAPMQTSSKAGPWRKMLSSKDTNFLNFTYKNLELSDDPEHPGIAQVKKKNNKPTRRTFKSILHEFADTEEEPQSSSLNSTPSQLDQLPESLEPSPHSSISSEDSQSRHR |
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| Function | Serine/threonine-protein kinase CBK1 [UniProtKB/Swiss-Prot:Q6TGC6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0009830 | OsARC_12g0009830.01 | Chr12 | 10676402 | 10683462 | + | NAM | ||
| CDS seq | atggactccgcccgtagctggctccagaagcttcagccgcgggacaaggacaggggcaagccggcgtcgcccaccgccgcgaggaaggacgaagcggcggcgatggccgaggatggggaggaggcgatctcgagcaccaccgccaccaaggtggcggccgccaagcagttcatcgagaaccactacaaggaccagatgaggtcgctcgaggagcgcaaggagaggcgtcggatgctggagagtaagcttgcagatcctgatgtatctgaagaggagcaaaacaatattctgaaggacttcgaaaatagggagagagaaatcatgcgctcaaggaggcacaaaatgggtgttgatgattttgaattgcttaccattattggcagaggtgcatttggggaggtgaggctctgtagagagaaagctacatccaatgtatatgcaatgaaaaagcttaagaagtctgaaatgttacgaaggggccaggttgagcatgtgagagctgaaaggaatcttcttgcagaggttgacagtgcctacattgttaagctttattgctcatttcaagacgaagagtttctataccttgttatggaataccttcctggtggtgacatgatgactctactaatgcgcaaggatacacttacagatgatgaatctagattttatgttgcggagacaattctagcaattgaatccatacacaagcacaattatattcatagggatatcaagcctgacaatttgctgttagaccgaactgggcacctgaagctttcagattttggcttatgcaaacctctagatagtactagctttccaaatctgagtgagtttgactatgcagtggggaaaaacattaatccgtcaatggatggtgataaactattaagtagctctgctgctcccaggaggacacaacaggaacagctattgcattggcagaagaatcggcggatgctggcttattcaacagttggtacacctgattacattgctccggaggtactattgaagaaaggatatggaatggagtgtgacttgtggtcacttggagccattatgtatgagatgcttgtgggttatccaccattttattcggaagatccaatgtccacatgtaggaagatagtgaactggagaagtcatctaaaattccctgaagaggccaaactgtcaccagaagctaaagatcttattagcaaactattatgtaacgcggatttgaggcttggaacaaaaggagcacatgagataaaggcacacccgtggttcaaaggtcttgagtgggagaagctatatcagatggaggctgcttttattcctgaggttaatgacgagttggacacacaaaattttgagaaatttgaggagattgctccaatgcaaacttcatcaaaggcaggtccttggagaaagatgctttcctccaaggacacgaattttctcaattttacctacaaaaaccttgaactatcagatgatcctgaacatccaggaatagctcaagtaaagaaaaagaataacaagccaacgaggcggacctttaaatcaatattgcatgaatttgctgatactgaagaggaacctcaaagcagttccttgaactcaacgccatcacaattggatcagttgcccgagagccttgagccttctcctcactctagtatctcctcagaagattcacagtcgcggcatagatag
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| Protein seq | MDSARSWLQKLQPRDKDRGKPASPTAARKDEAAAMAEDGEEAISSTTATKVAAAKQFIENHYKDQMRSLEERKERRRMLESKLADPDVSEEEQNNILKDFENREREIMRSRRHKMGVDDFELLTIIGRGAFGEVRLCREKATSNVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSAYIVKLYCSFQDEEFLYLVMEYLPGGDMMTLLMRKDTLTDDESRFYVAETILAIESIHKHNYIHRDIKPDNLLLDRTGHLKLSDFGLCKPLDSTSFPNLSEFDYAVGKNINPSMDGDKLLSSSAAPRRTQQEQLLHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDLWSLGAIMYEMLVGYPPFYSEDPMSTCRKIVNWRSHLKFPEEAKLSPEAKDLISKLLCNADLRLGTKGAHEIKAHPWFKGLEWEKLYQMEAAFIPEVNDELDTQNFEKFEEIAPMQTSSKAGPWRKMLSSKDTNFLNFTYKNLELSDDPEHPGIAQVKKKNNKPTRRTFKSILHEFADTEEEPQSSSLNSTPSQLDQLPESLEPSPHSSISSEDSQSRHR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.012309 | 0.588410 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0290100 | RBH | 0.446055 | 0.069852 | 1.132256 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g19290 | RBH | 0.318671 | 0.055634 | 0.298469 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0290100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009960 | RBH | 0.338550 | 6.110973 | 6.827168 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0010170 | RBH | 0.050592 | 2.562469 | 3.660441 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0010100 | RBH | 1.920905 | 13.616482 | 9.454080 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0009770 | RBH | 3.480050 | 7.714331 | 9.440542 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0153900 | RBH | 6.8914135 | 15.7917165 | 22.539439 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0009790 | RBH | 0.063353 | 0.507362 | 0.850146 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0170100 | RBH | 3.959881 | 6.6126895 | 18.077465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009710 | RBH | 0.065959 | 0.100335 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009970 | RBH | 0.254002 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009920 | RBH | 2.596008 | 10.924128 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009870 | RBH | 0.432493 | 0.0 | 0.817512 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009930 | RBH | 0.211192 | 7.534847 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009690 | RBH | 0.183528 | 7.461032 | 2.797470 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009620 | RBH | 1.321934 | 10.950487 | 7.011815 |
