Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_12g0003900 | OGI:12007710 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr12:2789371-2791244 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATAGAACAGTAGAAGAGTCATTCATGCATGTATAGAAACAGTAGTAGTGGTAGAAGAAAAGGGGAAGAGAACAAAATCCCCATTGGGGTATTACTTTGTTTCTTCAGGTTCAGGGGAGGCAGCAGGAGAAGGATACATCAACTTCACAGTTTGTTCATGGACCCACTCACAGTCACATACTACAGATGACACATACATACTTGCAAAACATGTCAATTTTTCCTCTCTCTCTCTCTCTCCTGTTTGTTTCTCATGGTGTGTCACCATCTCTCTCCTCCCTCTCCTTTTCAACCTGATGTTTCCTGAAACCTCCCCACCTGCTGCAAGGGCCCCCGTACTGTAAGTAGGGTTTCTGGAAGACAAGAATGTAAAAAAAACCCAGGAAAAGGGGCACTCTGATGATTCATGGAAGGAAGATTGCCCGGGAAACAAGGGATCTCTCCCCACTTCCTTCTTCTTTTTTCCCTTCCAACAGGTCAATTCAATCGAACCTGTCACTTGGTTCAGAGTGTAGTAGTAGTAGGCTGGTGGTAGTAGTAACTAGTTTCACTGTTGGTGGTTAGGATTCTGCAAGCAAAGGCCTCAGATCTCCTCATCATCTCATCAACTAGCTGCCCCTGTTGTGCAAAAACAAGAGAATTGTTTGAAAACCTTAGAATTAACAATTGAATTTGATTTGGAGAAGTGCTGGTCGTTGCTGTCATTTGATTTCTAGTTCGTTCTCTACTAGCTTAATGCTGCAACTGTAATTCTAGATGGCTGTTAAAACTGAAAAAATACTGACCAGTAATTTGGCACTGTAGACACTGCGGCGTAGGGGCTCTGGTGGTGCATGTAGCCGTACATTGCCGTCGCCTGATCCGCCTCCGGCTCCGGGCCGCAGTCGAGGTTAACGCCGAACAGCCTGAGCCGCCTCGACGGCGGCGGCGCCGACGCCGCGCTGCTGCTCTTGGCGTCTGCTTCTCTCTGCGACTCTCCTGCAAATTGTTCCACCGCGAAAGGTATATGATCTTTAATCACTTGCTGTAGTTGCATGTTAATTATAGTATCAAAGTGCTTAATTAATTTGTTCTTGAGTTTCTACTACTAGATATGCAATTGCGTGTTTAGTTAGTTACCTGCGTGTAGTATGTCGCTGTGATCTTGGTCTACGGAGCGATGGTAGGCATATGAATTGGCAGGGCTGGTAGGGTCGTAGGACGAGCCCGACGTGCTGTAACACATTGGGCTCCACGGCTGCTGCTCGCCGCCGTTGAGGGCAGGCGGCTGCGGCGTGACGCGAACGGCGGGCGGCGGCGCGGGCGCGCTCTCGCCGCGGCGCCTGCAGCCGATGAAGAGGCGGTCGGCGGCGCCGAGGCCGCGGACGCGCTCGAAGTGGACGACGTCGCCGGCGTCGAGGCGCTTCTCCTTGACGTAGCGGCTCCAGCCCTTGGTGAGCACGTAGCTCTGGCTGCTGGTCCAGTAGGAGTAGCGGAACCGCCATGGCTTGCCGGACTCGTCCTCGAAGGAGAGGAGGAGGCCCTTCTCACCGGAGTCGCCGCCGCCGAGCGGGAAGTACCTCTCGGCGTGCTGCTTGGGGATCACCAGCCTGTTGAGCTTGCCGACGTCGCTCGGCGTCAGCGGCTTCTCGAACAGGTGCTCCCTCTCGTAGTGGTGGTGGTAGTGCAGGTTGGTGTACATGGCTACACCCCATGGCCACGCCTGGGGGTGCCCCTGGGCGAGAGGGTGCATGGCCATTGCTGCGGCTGAGCTAGAGCTGATCGATCGGTCGATCGAAACAAAGATGTGTTGGGAGCAAAAGTTGGGTAGTGGAGAAGAGGAGAGGAGAGGAGAGGAGGTAGGAGATGAAGATGATGATGGTGTGTTGTGTAGAG
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| CDS seq | ATGGCCATGCACCCTCTCGCCCAGGGGCACCCCCAGGCGTGGCCATGGGGTGTAGCCATGTACACCAACCTGCACTACCACCACCACTACGAGAGGGAGCACCTGTTCGAGAAGCCGCTGACGCCGAGCGACGTCGGCAAGCTCAACAGGCTGGTGATCCCCAAGCAGCACGCCGAGAGGTACTTCCCGCTCGGCGGCGGCGACTCCGGTGAGAAGGGCCTCCTCCTCTCCTTCGAGGACGAGTCCGGCAAGCCATGGCGGTTCCGCTACTCCTACTGGACCAGCAGCCAGAGCTACGTGCTCACCAAGGGCTGGAGCCGCTACGTCAAGGAGAAGCGCCTCGACGCCGGCGACGTCGTCCACTTCGAGCGCGTCCGCGGCCTCGGCGCCGCCGACCGCCTCTTCATCGGCTGCAGGCGCCGCGGCGAGAGCGCGCCCGCGCCGCCGCCCGCCGTTCGCGTCACGCCGCAGCCGCCTGCCCTCAACGGCGGCGAGCAGCAGCCGTGGAGCCCAATGTGTTACAGCACGTCGGGCTCGTCCTACGACCCTACCAGCCCTGCCAATTCATATGCCTACCATCGCTCCGTAGACCAAGATCACAGCGACATACTACACGCAGGAGAGTCGCAGAGAGAAGCAGACGCCAAGAGCAGCAGCGCGGCGTCGGCGCCGCCGCCGTCGAGGCGGCTCAGGCTGTTCGGCGTTAACCTCGACTGCGGCCCGGAGCCGGAGGCGGATCAGGCGACGGCAATGTACGGCTACATGCACCACCAGAGCCCCTACGCCGCAGTGTCTACAGTGCCAAATTACTGGGGCAGCTAG
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| Protein seq | MAMHPLAQGHPQAWPWGVAMYTNLHYHHHYEREHLFEKPLTPSDVGKLNRLVIPKQHAERYFPLGGGDSGEKGLLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGLGAADRLFIGCRRRGESAPAPPPAVRVTPQPPALNGGEQQPWSPMCYSTSGSSYDPTSPANSYAYHRSVDQDHSDILHAGESQREADAKSSSAASAPPPSRRLRLFGVNLDCGPEPEADQATAMYGYMHHQSPYAAVSTVPNYWGS |
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| Function | B3 domain-containing protein Os11g0156000 [UniProtKB/Swiss-Prot:Q53QI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0003900 | OsARC_12g0003900.01 | Chr12 | 2789371 | 2791244 | - | NAM | ||
| CDS seq | ATGGCCATGCACCCTCTCGCCCAGGGGCACCCCCAGGCGTGGCCATGGGGTGTAGCCATGTACACCAACCTGCACTACCACCACCACTACGAGAGGGAGCACCTGTTCGAGAAGCCGCTGACGCCGAGCGACGTCGGCAAGCTCAACAGGCTGGTGATCCCCAAGCAGCACGCCGAGAGGTACTTCCCGCTCGGCGGCGGCGACTCCGGTGAGAAGGGCCTCCTCCTCTCCTTCGAGGACGAGTCCGGCAAGCCATGGCGGTTCCGCTACTCCTACTGGACCAGCAGCCAGAGCTACGTGCTCACCAAGGGCTGGAGCCGCTACGTCAAGGAGAAGCGCCTCGACGCCGGCGACGTCGTCCACTTCGAGCGCGTCCGCGGCCTCGGCGCCGCCGACCGCCTCTTCATCGGCTGCAGGCGCCGCGGCGAGAGCGCGCCCGCGCCGCCGCCCGCCGTTCGCGTCACGCCGCAGCCGCCTGCCCTCAACGGCGGCGAGCAGCAGCCGTGGAGCCCAATGTGTTACAGCACGTCGGGCTCGTCCTACGACCCTACCAGCCCTGCCAATTCATATGCCTACCATCGCTCCGTAGACCAAGATCACAGCGACATACTACACGCAGGAGAGTCGCAGAGAGAAGCAGACGCCAAGAGCAGCAGCGCGGCGTCGGCGCCGCCGCCGTCGAGGCGGCTCAGGCTGTTCGGCGTTAACCTCGACTGCGGCCCGGAGCCGGAGGCGGATCAGGCGACGGCAATGTACGGCTACATGCACCACCAGAGCCCCTACGCCGCAGTGTCTACAGTGCCAAATTACTGGGGCAGCTAG
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| Protein seq | MAMHPLAQGHPQAWPWGVAMYTNLHYHHHYEREHLFEKPLTPSDVGKLNRLVIPKQHAERYFPLGGGDSGEKGLLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGLGAADRLFIGCRRRGESAPAPPPAVRVTPQPPALNGGEQQPWSPMCYSTSGSSYDPTSPANSYAYHRSVDQDHSDILHAGESQREADAKSSSAASAPPPSRRLRLFGVNLDCGPEPEADQATAMYGYMHHQSPYAAVSTVPNYWGS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0003900 | OsARC_12g0003900.02 | Chr12 | 2789419 | 2791240 | - | IsoSeq | ||
| CDS seq | ATGGTGACACACCATGAGAAACAAACAGGAGAGAGAGAGAGAGAGGAAAAATTGACATGTTTTGCAAGTATGTATGTGTCATCTGTAGTATGTGACTGTGAGTGGGTCCATGAACAAACTGTGAAGTTGATGTATCCTTCTCCTGCTGCCTCCCCTGAACCTGAAGAAACA |
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| Protein seq | MVTHHEKQTGEREREEKLTCFASMYVSSVVCDCEWVHEQTVKLMYPSPAASPEPEET |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.045539 | 0.848880 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0157000 | RBH | 0.000000 | 0.000000 | 2.348223 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g06080 | RBH | 0.000000 | 0.142089 | 0.961763 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0157000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0003830 | RBH | 0.0 | 0.0 | 1.621095 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0004070 | RBH | 0.0 | 2.387719 | 0.788714 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004080 | RBH | 0.0 | 8.707753 | 5.512543 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0003770 | RBH | 0.0 | 0.132670 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004090 | RBH | 0.0 | 40.495453 | 4.489267 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0049600 | RBH | 1.131156 | 2.209033 | 11.0734915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0004080 | RBH | 0.000000 | 2.115240 | 0.971333 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0054100 | RBH | 1.5284275 | 0.491958 | 8.7062555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0003860 | RBH | 0.0 | 0.060264 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0004080 | RBH | 0.215095 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0004090 | RBH | 0.000000 | 22.185570 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0004040 | RBH | 0.0 | 0.0 | 1.456601 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004000 | RBH | 0.0 | 19.820532 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003920 | RBH | 0.086716 | 21.891916 | 3.311164 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0004130 | RBH | 0.000000 | 0.0 | 3.229071 |
