Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_12g0003210 | OGI:12006320 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr12:2254320-2256110 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCGAAGGAGGTCATTCAATATAATTAAGATAGAAAGAAATGTTACAAGAAAAGTTTTACATCAACAGCTGGCTGTCGAGAAAGGATGTGCACCAGAGCACACGCTTCGAACCATGTGCCAACCGTCCAAACACGCTACAGAGAGGAAGCCAAGCACGGAACCGGCCGTCGCTATGCGAGACCGATCACCACCGGGACAACAAACCACCACGGCGCGAAGACTCTACAACGACACCCTCACGAGGGTCGTGACGCCGAAAGATGCCGTCGTCATCCATCCAAAGAACTGGATAAGGTTTTCACCCAGAGCTCCTTTCCAAGGAAGGAGGGGGTACCTCAACAATGCCCTCAGGAGGCTTACCACGCCCGAAAGCGTGGTCACTGTTGGCCCAAAGAAATTGGGCTAAGCTTTCGCTCGAAATCCCCTACTGCCGTGGTCCGTCGCTCAATCCGAATCCACCATCTAACACCGGCGGCACATGGCTTCCGCCACACCTGACCTACGCCCCTCCACCGGCCGACTTCCAGTCCTGCCAATGACAAGACTGCCATAGCACCGGTCACCTCCGCCAGCGCGCTGACCCAGGCTGCCTCCGCCACGCCGCTCGCCGGCCTCCCAGTCGAATCCGGCCCAAGGGTGCCTGGACAAGGAACAACATTGCCTCAGCAACCAGAGTTTTCCTTGTAGACCGACCACCACCTTCATCCTGCCAAGAAGCTCCCCACAGAGAAGGGGAGGAGCTCCCCAAACAGGGTTAGCCTGCCCGACCGCAAGGAAGACGACCCTGCCGCCAGCGCCCTTTACCACGCCGCTACTCCCTAGCACGCTGACCCAGGCCACCTCTGCCACGCCGCCTGTCGGCCTCCACGTCGAATCCGGCCTATGGGATCTGACCGGGAACAACCTCGCCTTGGCAACCTGAGTCTTCCCTGTAGGCCGGCCATCGCCTCTACCCGTGCCTAAAAGCTCCCTATAAAGAAGGGGAAGAGCTCCTTAAATATAGTGGTAACCTGGCCAACCACAAGGAAGACGACCTCGCCGCCAAACCCACCGCCGGCCTTGTCGATGCCACCACTCCGCCGCCACCTTGCCGCCCACCAACGGCCACTCGGGCCACTCAACGTCGTCGGTCGAGCCTCCAAGCCACATCGCGGCGGCCCTAGGCCGCCGATGTGGGCCGTCGACATCCGTCACCGGCGCCACCGCTGCCATCTAGCCGCCCGGACACTACGCCGCATCCAGCGCCGTCGACACCGACGCCGTCCAGCCTCAGTTGCCTAGCTGTCGCACCACCACCACCGTTGTCGTGCAGCCGCGGCCGCCGGCCCTGCAGCTTCCCGGCTAGATTCGGCCCAGGGAGGCCGGATCCCGCCGCGTGGGGGCCGGATCCGCGGCTGCCCTCACTTGGATGCGCCGTCGCCGCCGCTATCCACAAAGGTTCGTCGCGCCGCCCGAGCCTCTGACCGCTGTCGCCGCCCCCACCATCGTGGACACCAGATCCGCTGCCGGGGGGTGGATCCACCGCGCCGGCTGCCAGATCCATCGCGCCAACGCCCGACCGTCGCCTCCCGCTTCTCGCTGCCGCTAAGCAACCCCGATGTCCTCGCCGGCTGGGTATCCTCGTGGGGAGAGCGCCCCGCAGCCGCCGTCCTTGCAACCGTTTGACTTTGCTGGCGAGCCGCTCGGGCGGCGGCGAGTCGAAGGGGGGGAGGTGGGAAGGGGTGGCGGGGGAGAGTTTTTCGCCGTCCATGTCGCCCCTGGGACGGGAGCGAGGTGGATGGAAGCGACTC
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| CDS seq | ATGGATCTGGCAGCCGGCGCGGTGGATCCACCCCCCGGCAGCGGATCTGGTGTCCACGATGGTGGGGGCGGCGACAGCGGTCAGAGGCTCGGGCGGCGCGACGAACCTTTGTGGATAGCGGCGGCGACGGCGCATCCAAGTGAGGGCAGCCGCGGATCCGGCCCCCACGCGGCGGGATCCGGCCTCCCTGGGCCGAATCTAGCCGGGAAGCTGCAGGGCCGGCGGCCGCGGCTGCACGACAACGGTGGTGGTGGTGCGACAGCTAGGCAACTGAGGCTGGACGGCGTCGGTGTCGACGGCGCTGGATGCGGCGTAGTGTCCGGGCGGCTAGATGGCAGCGGTGGCGCCGGCACCCTTGGGCCGGATTCGACTGGGAGGCCGGCGAGCGGCGTGGCGGAGGCAGCCTGGGTCAGCGCGCTGGCGGAGGTGACCGGTGCTATGGCAGTCTTGTCATTGGCAGGACTGGAAGTCGGCCGGTGGAGGGGCGTAGGTCAGGTGTGGCGGAAGCCATGTGCCGCCGGTGTTAGATGGTGGATTCGGATTGAGCGACGGACCACGGCAGTAGGGGATTTCGAGCGAAAGCTTAGCCCAATTTCTTTGGGCCAACACCTCCTGAGGGCATTGTTGAGGTACCCCCTCCTTCCTTGGAAAGGAGCTCTGGGTGAAAACCTTATCCAGTTCTTTGGATGGATGACGACGGCATCTTTCGGCGTCACGACCCTCGTGAGGGTGTCGTTGTAG
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| Protein seq | MDLAAGAVDPPPGSGSGVHDGGGGDSGQRLGRRDEPLWIAAATAHPSEGSRGSGPHAAGSGLPGPNLAGKLQGRRPRLHDNGGGGATARQLRLDGVGVDGAGCGVVSGRLDGSGGAGTLGPDSTGRPASGVAEAAWVSALAEVTGAMAVLSLAGLEVGRWRGVGQVWRKPCAAGVRWWIRIERRTTAVGDFERKLSPISLGQHLLRALLRYPLLPWKGALGENLIQFFGWMTTASFGVTTLVRVSL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0003210 | OsARC_12g0003210.01 | Chr12 | 2254543 | 2255863 | - | NAM | ||
| CDS seq | ATGGATCTGGCAGCCGGCGCGGTGGATCCACCCCCCGGCAGCGGATCTGGTGTCCACGATGGTGGGGGCGGCGACAGCGGTCAGAGGCTCGGGCGGCGCGACGAACCTTTGTGGATAGCGGCGGCGACGGCGCATCCAAGTGAGGGCAGCCGCGGATCCGGCCCCCACGCGGCGGGATCCGGCCTCCCTGGGCCGAATCTAGCCGGGAAGCTGCAGGGCCGGCGGCCGCGGCTGCACGACAACGGTGGTGGTGGTGCGACAGCTAGGCAACTGAGGCTGGACGGCGTCGGTGTCGACGGCGCTGGATGCGGCGTAGTGTCCGGGCGGCTAGATGGCAGCGGTGGCGCCGGCACCCTTGGGCCGGATTCGACTGGGAGGCCGGCGAGCGGCGTGGCGGAGGCAGCCTGGGTCAGCGCGCTGGCGGAGGTGACCGGTGCTATGGCAGTCTTGTCATTGGCAGGACTGGAAGTCGGCCGGTGGAGGGGCGTAGGTCAGGTGTGGCGGAAGCCATGTGCCGCCGGTGTTAGATGGTGGATTCGGATTGAGCGACGGACCACGGCAGTAGGGGATTTCGAGCGAAAGCTTAGCCCAATTTCTTTGGGCCAACACCTCCTGAGGGCATTGTTGAGGTACCCCCTCCTTCCTTGGAAAGGAGCTCTGGGTGAAAACCTTATCCAGTTCTTTGGATGGATGACGACGGCATCTTTCGGCGTCACGACCCTCGTGAGGGTGTCGTTGTAG
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| Protein seq | MDLAAGAVDPPPGSGSGVHDGGGGDSGQRLGRRDEPLWIAAATAHPSEGSRGSGPHAAGSGLPGPNLAGKLQGRRPRLHDNGGGGATARQLRLDGVGVDGAGCGVVSGRLDGSGGAGTLGPDSTGRPASGVAEAAWVSALAEVTGAMAVLSLAGLEVGRWRGVGQVWRKPCAAGVRWWIRIERRTTAVGDFERKLSPISLGQHLLRALLRYPLLPWKGALGENLIQFFGWMTTASFGVTTLVRVSL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0003210 | OsARC_12g0003210.02 | Chr12 | 2254320 | 2256110 | - | IsoSeq | ||
| CDS seq | AGTCGCTTCCATCCACCTCGCTCCCGTCCCAGGGGCGACATGGACGGCGAAAAACTCTCCCCCGCCACCCCTTCCCACCTCCCCCCCTTCGACTCGCCGCCGCCCGAGCGGCTCGCCAGCAAAGTCAAACGGTTGCAAGGACGGCGGCTGCGGGGCGCTCTCCCCACGAGGATACCCAGCCGGCGAGGACATCGGGGTTGCTTAGCGGCAGCGAGAAGCGGGAGGCGACGGTCGGGCGTTGGCGCGATGGATCTGGCAGCCGGCGCGGTGGATCCACCCCCCGGCAGCGGATCTGGTGTCCACGATGGTGGGGGCGGCGACAGCGGTCAGAGGCTCGGGCGGCGCGACGAACCTTTGTGGATAGCGGCGGCGACGGCGCATCCAAGTGAGGGCAGCCGCGGATCCGGCCCCCACGCGGCGGGATCCGGCCTCCCTGGGCCGAATCTAGCCGGGAAGCTGCAGGGCCGGCGGCCGCGGCTGCACGACAACGGTGGTGGTGGTGCGACAGCTAGGCAACTGAGGCTGGACGGCGTCGGTGTCGACGGCGCTGGATGCGGCGTAGTGTCCGGGCGGCTAGATGGCAGCGGTGGCGCCGGTGACGGATGTCGACGGCCCACATCGGCG
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| Protein seq | SRFHPPRSRPRGDMDGEKLSPATPSHLPPFDSPPPERLASKVKRLQGRRLRGALPTRIPSRRGHRGCLAAARSGRRRSGVGAMDLAAGAVDPPPGSGSGVHDGGGGDSGQRLGRRDEPLWIAAATAHPSEGSRGSGPHAAGSGLPGPNLAGKLQGRRPRLHDNGGGGATARQLRLDGVGVDGAGCGVVSGRLDGSGGAGDGCRRPTSA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.079240 | 0.164348 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g05190 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0003170 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003400 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0003400 | RBH | 0.0 | 0.0 | 1.254175 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0003420 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0040800 | RBH | 0 | 0.010391 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0003400 | RBH | 0.0 | 0.0 | 0.145740 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0043800 | RBH | 0 | 0.0286085 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0003190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0003400 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0003430 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0003370 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0003320 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003230 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0003450 | RBH | 0.0 | 0.0 | 0.0 |
