Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_11g0023340 | OGI:11031080 | 14/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr11:27605374-27606066 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGTTCCTACTAATAGAAGTCTCACCGGGAACGTTGCTCTGCTTGTTGATCTTCGATGGTGGAGTGGCAACTGTCTTGACAGCTGTAACAGGTAGGATCTTCTTGCCCGTGGGGTTACCAAGCGGTGATTTGCTGATGAGCCTCTGGATTGGAGCAATACGAGGTGCATTGCTAGGACTGACAACAGTTGGGCGGCCTGGTGCTGACAACACTTGCTGCGGGTGCTGACGAAGGACCGTACTGCCTCTTTGTAGCTGTAGCGAGCTGTTGTTCTCCTGGCATTGCTTACCCTGCTGGCGTTGGTGTTGTAGGCTTGAAACCGTTGCCGGTGGAACAATGCGGCCTTTGACGGTGCCCTTGACAATGATCCGTTGAGGCGGGGGTTGCACATTTAGGTGTCGATTGGTGTCGTGGGCAGTATTGGTAACTTGCGAATAACGATGAACTGCCTTTGCTGCTCTTGGAAGAGGACAATCACTGAAACAATGTCCTGGCTTACGACAGTTGCGACAGAATCGACTTGCTTGGTCCCGGGGTGCAGGTTTCTGATTATGCACTTTGGCAGCTGAAACTGGAACAAGCAGGGATTTATGAGCATCCCTGGTGACGTTGCTTCTTCCATGGTTGGCTTCCACTGGAGCTGGAATTGGAGGAAGAGCAGAAGGATTGTGACTGATGTCGTCGACTACCAT
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| CDS seq | ATGGTAGTCGACGACATCAGTCACAATCCTTCTGCTCTTCCTCCAATTCCAGCTCCAGTGGAAGCCAACCATGGAAGAAGCAACGTCACCAGGGATGCTCATAAATCCCTGCTTGTTCCAGTTTCAGCTGCCAAAGTGCATAATCAGAAACCTGCACCCCGGGACCAAGCAAGTCGATTCTGTCGCAACTGTCGTAAGCCAGGACATTGTTTCAGTGATTGTCCTCTTCCAAGAGCAGCAAAGGCAGTTCATCGTTATTCGCAAGTTACCAATACTGCCCACGACACCAATCGACACCTAAATGTGCAACCCCCGCCTCAACGGATCATTGTCAAGGGCACCGTCAAAGGCCGCATTGTTCCACCGGCAACGGTTTCAAGCCTACAACACCAACGCCAGCAGGGTAAGCAATGCCAGGAGAACAACAGCTCGCTACAGCTACAAAGAGGCAGTACGGTCCTTCGTCAGCACCCGCAGCAAGTGTTGTCAGCACCAGGCCGCCCAACTGTTGTCAGTCCTAGCAATGCACCTCGTATTGCTCCAATCCAGAGGCTCATCAGCAAATCACCGCTTGGTAACCCCACGGGCAAGAAGATCCTACCTGTTACAGCTGTCAAGACAGTTGCCACTCCACCATCGAAGATCAACAAGCAGAGCAACGTTCCCGGTGAGACTTCTATTAGTAGGAACTGA
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| Protein seq | MVVDDISHNPSALPPIPAPVEANHGRSNVTRDAHKSLLVPVSAAKVHNQKPAPRDQASRFCRNCRKPGHCFSDCPLPRAAKAVHRYSQVTNTAHDTNRHLNVQPPPQRIIVKGTVKGRIVPPATVSSLQHQRQQGKQCQENNSSLQLQRGSTVLRQHPQQVLSAPGRPTVVSPSNAPRIAPIQRLISKSPLGNPTGKKILPVTAVKTVATPPSKINKQSNVPGETSISRN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0023340 | OsARC_11g0023340.01 | Chr11 | 27605374 | 27606066 | - | NAM | ||
| CDS seq | ATGGTAGTCGACGACATCAGTCACAATCCTTCTGCTCTTCCTCCAATTCCAGCTCCAGTGGAAGCCAACCATGGAAGAAGCAACGTCACCAGGGATGCTCATAAATCCCTGCTTGTTCCAGTTTCAGCTGCCAAAGTGCATAATCAGAAACCTGCACCCCGGGACCAAGCAAGTCGATTCTGTCGCAACTGTCGTAAGCCAGGACATTGTTTCAGTGATTGTCCTCTTCCAAGAGCAGCAAAGGCAGTTCATCGTTATTCGCAAGTTACCAATACTGCCCACGACACCAATCGACACCTAAATGTGCAACCCCCGCCTCAACGGATCATTGTCAAGGGCACCGTCAAAGGCCGCATTGTTCCACCGGCAACGGTTTCAAGCCTACAACACCAACGCCAGCAGGGTAAGCAATGCCAGGAGAACAACAGCTCGCTACAGCTACAAAGAGGCAGTACGGTCCTTCGTCAGCACCCGCAGCAAGTGTTGTCAGCACCAGGCCGCCCAACTGTTGTCAGTCCTAGCAATGCACCTCGTATTGCTCCAATCCAGAGGCTCATCAGCAAATCACCGCTTGGTAACCCCACGGGCAAGAAGATCCTACCTGTTACAGCTGTCAAGACAGTTGCCACTCCACCATCGAAGATCAACAAGCAGAGCAACGTTCCCGGTGAGACTTCTATTAGTAGGAACTGA
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| Protein seq | MVVDDISHNPSALPPIPAPVEANHGRSNVTRDAHKSLLVPVSAAKVHNQKPAPRDQASRFCRNCRKPGHCFSDCPLPRAAKAVHRYSQVTNTAHDTNRHLNVQPPPQRIIVKGTVKGRIVPPATVSSLQHQRQQGKQCQENNSSLQLQRGSTVLRQHPQQVLSAPGRPTVVSPSNAPRIAPIQRLISKSPLGNPTGKKILPVTAVKTVATPPSKINKQSNVPGETSISRN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g04150 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023560 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024010 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0010360 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0009890 | RBH | 0.003862 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023120 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0186400 | SBH | 0 | 0.005682 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023210 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0040900 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0012050 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0012260 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022580 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011630 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023460 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023520 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004780 | SBH | 0.0 | 0.0 | 0.0 |
