Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_11g0019910 | OGI:11069280 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr11:23656678-23659566 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATCCATAGAGGCATTCTGACTTATTCATTGACTCAATCTCAGGCCACACCTCAGTTTCTAAGTTTGGACGATGTTTCCTTTCATTATTGCTGCATCTCAAGCCCAGTGAAACCATCTTTACAGCATCCTGTATAAACTTGTCGTCCAACTTCAATTTAGCATCCAAGATTTGAAGTTTCTCAAGGATCATCTTTTGCCTGCGTGTGTCCATTTTCCCCAAATTTTGCCTTTCCAATTTATCAACCATATGCTTTCTTAGGCCGGTTGCACTTTGGCCTGTGACTAGCTGCAGCAATATGATACCCAAAGCGAATACATCTGACTGAGGAGTCAGTTTGCCTGTACTCAAGAATTCAGGGTCCATATAGGGGCCGCTACCCTTCGGCACTTCTGTAATATGGTTAGGTATTACTGTGTCAGTGCTGTGCTGTAACAGACGGGAAATTCCAAAATCACTGAGCTTGCATACATTTTCTGCATCGAAGAGGATGTTGTTTGGTTTAAGATCACCGTGAGCGATTGGAATAGGCTTGGTATTGTGGAGGAATACAAGAGCAGAGCATATGCTGGTTGCCACTCTGACTCTTTCTTCCCATGAGAATGATTCCTTGCGTTCTTCTTTACTGAGGCAATCTTCAAGGGTGCCAGAAGGTAAAAACTCATACATGAGTGCAAATTTCTCACTGCATGCTCCCAGGAGAATGACCAGGTTTGGGTGTCTGATCCTTTTGAGTATCCCCACCTGCATTTCCAGAATTTTTGTTGTTAAGAATAATAATGCATGTTAGATTTATTCGTTGGATAAATATTAGGTTTGTTAAAAGGTAATGCAAGAAGTTAAATGGTGCTACAATCTTTGCTTGCAAGGGTGAAGCCAGGGAGAAAAAGGTGAACTCCGCAATCTAAACTGTTGGGCCCGTCTTTTTTGAGCTATTGGGGACAGTGTCTATGGTCTACCTCAATTGGAAGTGATTCATTTCAGTTACTAAAGTAGACTTTGCATAAGTACCTCACAAGTGCAGTATTCGCTGGTACTGCAGCAGCAGGCTCACTCTAAGGATAACCTTTTCTGAATGTCACCTATTTCCTAAATAGTTTGATTAGTTTTCTAGGATAAGGGTTAGGTGTTTGACATCTTATTGTTTAGATTGATCTTACCCGTATTTGGTAGAATCCTCTGTACAATGAGGTTAGTGCTATTACCATGAAGCAAGAATAGGTGATATCTAGGTCCTTAAACTTGTAGGGTTGTGTTATCTAGGTCCCTAAACTCTTAAAATACAGATCCAGGTCTCAGAACTTGTCAAAGTGTATCATTTAGATCCCAAATCGGGACAACCCCTATAGGATCCTATGTGGCGCTGATGTGGCATGCCATATGGACGTGACTTGTCCTTTTCTTCTTTTTTCTTCTTTTTCTTTTTCATTTTCTTTTCATTCTTTTTTTTCCTTTCTTCTATTCAGGTCTAAGAGAAAGGAGAAGAAAGGAAAAAAAAAGAAGAAAAAAATAAAAATAAAATTTTTTAAATGGGTTCCATTTGTTAGTCAAAATGATGACACATCTTGTCCGTGTGGCATACCACATCAGCGCCACGTAGGATCCTATAGAGGCTGTGGCGATTTGGGACCTAGATGACACGCTATGATAAGTTCTAGGACTTGATATGTATTTTGAGAGTTTAGGGACCTAGATAACATACCCCTACAAGTTTAAGGACCGCTCATGCACTTTACTCATAAATTAATGAGTCAAAGAAGTCCCCATAATCTCTGTCTGCCCTTTCTCCTATACTCCCTCCCACTTCCAGTTCACAAAGTAGTAATGATAGAATACTAACTCACAAAGTATTTGCCCTTTTCTGGGGCTACTCACCTCTTGCTTGAACTCCCGCTCTCCTTGCCAGCTACTCTTATCAAGAATCTTCATAGCAACAGTCTTGCCCCGAAGTTCTGCCTTGTAAACGATGCCATAACTGCCTTTCCCGAGATGATATTTTTGGTCCTTTGGGATTGAATCGTCTACCTCTGAGTGATTGAACTCAGTGAAGCCACTATTGGAGTTTGAAGCTTCGTCCTCAATCCATTGACGGAATTTCTCATAAACAATTGTCAAGGTTTTCATCCTATTGAGTTTTCCGTCCTTCATTTTGAGTTCTCTGCCCTGTCTTTCTAGTTCTTCGCGCTGTCTTTCCAATTCTCTGCTCTGCCTTTCGAGTTCTTCACCATGTCTTTGGACAGTCAATGTGTGGTTTTGTCTCTCTTCTTCAAGTTGCTTCTTATGCTCTTCTTTTTCTTTGAGCTGCAATAAATAGAAGACCTTATCATGAGTTTTTACTAGTTTAAATCTGCAATTTTTCTTTTTGACAAAGTAACAAGTAAATATCTTGGTAAAATTATCACGCATTCAACAGAGGAGGGGTAACATTTGCATTAGTTTCACGCACATTAACCTTGTCAAAAACAACTATTTGAAGCTAAAAACCCAAAATAGAGTTGTTTTGATGAACCTGTAGATACGTTAACTAGATGAACAGTAATAAAAATATAAAAGTAGTGATAATTTGTCCGTAAGAGCTTACTGTATTCTCAGATTGCCGGTTGAGGTCTGTCTCCAGTGAAAGAATCCTTTCAGCCTGCGATTAATAATAGCTAAGCATTCCTAATTTGTATCACGGTTTGAACTTTTACAAGGTCTTACTCTTGAGGAGTTAGGGACTAGGGAGAGCAACCTGTGAGTTGCGGTTGAGCCAAAATACAAGGGTATGCACAACCGCCACCGCCGTCGCCGCTGCTGCTACCACCATCGCTGCCGCCGCCTTCTCCATCAGATTTCAGAGAAAAGATACAGCTAGCTTCTTGTTTGCAGTCTCGGATTGATAGAGCGAAG
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| CDS seq | ATGGAGAAGGCGGCGGCAGCGATGGTGGTAGCAGCAGCGGCGACGGCGGTGGCGGTTGTGCATACCCTTGTATTTTGGCTCAACCGCAACTCACAGGCTGAAAGGATTCTTTCACTGGAGACAGACCTCAACCGGCAATCTGAGAATACAGTAAGCTCTTACGGACAAATTATCACTACTTTTATATTTTTATTACTATTTAAACTAGTAAAAACTCATGATAAGGTCTTCTATTTATTGCAGCTCAAAGAAAAAGAAGAGCATAAGAAGCAACTTGAAGAAGAGAGACAAAACCACACATTGACTGTCCAAAGACATGGTGAAGAACTCGAAAGGCAGAGCAGAGAATTGGAAAGACAGCGCGAAGAACTAGAAAGACAGGGCAGAGAACTCAAAATGAAGGACGGAAAACTCAATAGGATGAAAACCTTGACAATTGTTTATGAGAAATTCCGTCAATGGATTGAGGACGAAGCTTCAAACTCCAATAGTGGCTTCACTGAGTTCAATCACTCAGAGGTAGACGATTCAATCCCAAAGGACCAAAAATATCATCTCGGGAAAGGCAGTTATGGCATCGTTTACAAGGCAGAACTTCGGGGCAAGACTGTTGCTATGAAGATTCTTGATAAGAGTAGCTGGCAAGGAGAGCGGGAGTTCAAGCAAGAGGTGGGGATACTCAAAAGGATCAGACACCCAAACCTGGTCATTCTCCTGGGAGCATGCAGTGAGAAATTTGCACTCATGTATGAGTTTTTACCTTCTGGCACCCTTGAAGATTGCCTCAGTAAAGAAGAACGCAAGGAATCATTCTCATGGGAAGAAAGAGTCAGAGTGGCAACCAGCATATGCTCTGCTCTTGTATTCCTCCACAATACCAAGCCTATTCCAATCGCTCACGGTGATCTTAAACCAAACAACATCCTCTTCGATGCAGAAAATGTATGCAAGCTCAGTGATTTTGGAATTTCCCGTCTGTTACAGCACAGCACTGACACAGTAATACCTAACCATATTACAGAAGTGCCGAAGGGTAGCGGCCCCTATATGGACCCTGAATTCTTGAGTACAGGCAAACTGACTCCTCAGTCAGATGTATTCGCTTTGGGTATCATATTGCTGCAGCTAGTCACAGGCCAAAGTGCAACCGGCCTAAGAAAGCATATGGTTGATAAATTGGAAAGGCAAAATTTGGGGAAAATGGACACACGCAGGCAAAAGATGATCCTTGAGAAACTTCAAATCTTGGATGCTAAATTGAAGTTGGACGACAAGTTTATACAGGATGCTGTAAAGATGGTTTCACTGGGCTTGAGATGCAGCAATAATGAAAGGAAACATCGTCCAAACTTAGAAACTGAGGTGTGGCCTGAGATTGAGTCAATGAATAAGTCAGAATGCCTCTATGGATAA
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| Protein seq | MEKAAAAMVVAAAATAVAVVHTLVFWLNRNSQAERILSLETDLNRQSENTVSSYGQIITTFIFLLLFKLVKTHDKVFYLLQLKEKEEHKKQLEEERQNHTLTVQRHGEELERQSRELERQREELERQGRELKMKDGKLNRMKTLTIVYEKFRQWIEDEASNSNSGFTEFNHSEVDDSIPKDQKYHLGKGSYGIVYKAELRGKTVAMKILDKSSWQGEREFKQEVGILKRIRHPNLVILLGACSEKFALMYEFLPSGTLEDCLSKEERKESFSWEERVRVATSICSALVFLHNTKPIPIAHGDLKPNNILFDAENVCKLSDFGISRLLQHSTDTVIPNHITEVPKGSGPYMDPEFLSTGKLTPQSDVFALGIILLQLVTGQSATGLRKHMVDKLERQNLGKMDTRRQKMILEKLQILDAKLKLDDKFIQDAVKMVSLGLRCSNNERKHRPNLETEVWPEIESMNKSECLYG |
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| Function | U-box domain-containing protein 70 [UniProtKB/Swiss-Prot:Q5WA76] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0019910 | OsARC_11g0019910.01 | Chr11 | 23656678 | 23659566 | - | NAM | ||
| CDS seq | ATGGAGAAGGCGGCGGCAGCGATGGTGGTAGCAGCAGCGGCGACGGCGGTGGCGGTTGTGCATACCCTTGTATTTTGGCTCAACCGCAACTCACAGGCTGAAAGGATTCTTTCACTGGAGACAGACCTCAACCGGCAATCTGAGAATACAGTAAGCTCTTACGGACAAATTATCACTACTTTTATATTTTTATTACTATTTAAACTAGTAAAAACTCATGATAAGGTCTTCTATTTATTGCAGCTCAAAGAAAAAGAAGAGCATAAGAAGCAACTTGAAGAAGAGAGACAAAACCACACATTGACTGTCCAAAGACATGGTGAAGAACTCGAAAGGCAGAGCAGAGAATTGGAAAGACAGCGCGAAGAACTAGAAAGACAGGGCAGAGAACTCAAAATGAAGGACGGAAAACTCAATAGGATGAAAACCTTGACAATTGTTTATGAGAAATTCCGTCAATGGATTGAGGACGAAGCTTCAAACTCCAATAGTGGCTTCACTGAGTTCAATCACTCAGAGGTAGACGATTCAATCCCAAAGGACCAAAAATATCATCTCGGGAAAGGCAGTTATGGCATCGTTTACAAGGCAGAACTTCGGGGCAAGACTGTTGCTATGAAGATTCTTGATAAGAGTAGCTGGCAAGGAGAGCGGGAGTTCAAGCAAGAGGTGGGGATACTCAAAAGGATCAGACACCCAAACCTGGTCATTCTCCTGGGAGCATGCAGTGAGAAATTTGCACTCATGTATGAGTTTTTACCTTCTGGCACCCTTGAAGATTGCCTCAGTAAAGAAGAACGCAAGGAATCATTCTCATGGGAAGAAAGAGTCAGAGTGGCAACCAGCATATGCTCTGCTCTTGTATTCCTCCACAATACCAAGCCTATTCCAATCGCTCACGGTGATCTTAAACCAAACAACATCCTCTTCGATGCAGAAAATGTATGCAAGCTCAGTGATTTTGGAATTTCCCGTCTGTTACAGCACAGCACTGACACAGTAATACCTAACCATATTACAGAAGTGCCGAAGGGTAGCGGCCCCTATATGGACCCTGAATTCTTGAGTACAGGCAAACTGACTCCTCAGTCAGATGTATTCGCTTTGGGTATCATATTGCTGCAGCTAGTCACAGGCCAAAGTGCAACCGGCCTAAGAAAGCATATGGTTGATAAATTGGAAAGGCAAAATTTGGGGAAAATGGACACACGCAGGCAAAAGATGATCCTTGAGAAACTTCAAATCTTGGATGCTAAATTGAAGTTGGACGACAAGTTTATACAGGATGCTGTAAAGATGGTTTCACTGGGCTTGAGATGCAGCAATAATGAAAGGAAACATCGTCCAAACTTAGAAACTGAGGTGTGGCCTGAGATTGAGTCAATGAATAAGTCAGAATGCCTCTATGGATAA
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| Protein seq | MEKAAAAMVVAAAATAVAVVHTLVFWLNRNSQAERILSLETDLNRQSENTVSSYGQIITTFIFLLLFKLVKTHDKVFYLLQLKEKEEHKKQLEEERQNHTLTVQRHGEELERQSRELERQREELERQGRELKMKDGKLNRMKTLTIVYEKFRQWIEDEASNSNSGFTEFNHSEVDDSIPKDQKYHLGKGSYGIVYKAELRGKTVAMKILDKSSWQGEREFKQEVGILKRIRHPNLVILLGACSEKFALMYEFLPSGTLEDCLSKEERKESFSWEERVRVATSICSALVFLHNTKPIPIAHGDLKPNNILFDAENVCKLSDFGISRLLQHSTDTVIPNHITEVPKGSGPYMDPEFLSTGKLTPQSDVFALGIILLQLVTGQSATGLRKHMVDKLERQNLGKMDTRRQKMILEKLQILDAKLKLDDKFIQDAVKMVSLGLRCSNNERKHRPNLETEVWPEIESMNKSECLYG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.079982 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0618600 | RBH | 0.0 | 0.304593 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g40400 | RBH | 0.0 | 0.188999 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0618600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020500 | RBH | 0.282912 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020570 | RBH | 0.278253 | 1.146408 | 1.968923 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020360 | RBH | 0.0 | 3.273787 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019930 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020420 | RBH | 0.0 | 9.364328 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0362300 | RBH | 0.3697965 | 1.4849135 | 1.3814215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020910 | RBH | 0.0 | 0.402836 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0380400 | RBH | 0.0302185 | 2.87423 | 0.1164835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020710 | RBH | 0.0 | 0.219807 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020860 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020510 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020160 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020270 | RBH | 0.159030 | 3.195127 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020250 | RBH | 0.0 | 1.112606 | 0.651446 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020620 | RBH | 0.0 | 0.0 | 0.0 |
